Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002077.1

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Forward (+)

6130 .. 9144

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002077.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ctgcaccgcttcgttcacctctttcggttttgggttagaggaagaagggagagaagaagaagaagaggaaaaccatcggtccgggcgttactcgaagttggagctaggagtgctgggcccaaatccggagaagaaggcgagctcttctcggatgataatgacttgacagagtcattaagagcaatggtaatgggcgctccattggaagatgctcggcatcttgctcaacgatatgacagaatgcggcaagaagctgaagctcaggaagcagctgcagcagttgaggctcaacaacagatattgaaaagactccttgccatgtttgcaaatctagaggagttccaggaagagttaaaggatattaaccaagaagagcagatctccaggcttcacgaaatgcttgctcctcatcttcttggaagtataaattcaaaactctatcaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

149

Amino Acids

17.24

Weight (kDa)

7.18

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	2 cut(s)	7, 244
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	304, 432
AjnI	CCWGG	2 cut(s)	342, 383
AluBI	AGCT	5 cut(s)	104, 142, 254, 260, 272
AluI	AGCT	5 cut(s)	104, 142, 254, 260, 272
Alw21I	GWGCWC	1 cut(s)	144
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	1 cut(s)	116
ApaI	GGGCCC	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	269, 272, 275
ApoI	RAATTY	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	79, 116, 117
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	120
BanII	GRGCYC	2 cut(s)	120, 144
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	259, 281, 287
BccI	CCATC	1 cut(s)	82
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	2 cut(s)	344, 385
BcnI	CCSGG	1 cut(s)	83
BfaI	CTAG	2 cut(s)	105, 332
BfmI	CTRYAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	198
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	4 cut(s)	245, 270, 273, 276
BlsI	GCNGC	4 cut(s)	246, 271, 274, 277
Bme1390I	CCNGG	3 cut(s)	83, 344, 385
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	3 cut(s)	79, 116, 117
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	3 cut(s)	83, 344, 385
BmsI	GCATC	2 cut(s)	199, 226
BplI	GAGNNNNNCTC	4 cut(s)	131, 163, 365, 397
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	2 cut(s)	344, 385
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	275
BseRI	GAGGAG	2 cut(s)	350, 396
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	259, 281, 287
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	82, 126
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	118
Bsp120I	GGGCCC	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	120, 144
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	378
BspACI	CCGC	2 cut(s)	7, 244
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	274
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	277
BspQI	GCTCTTC	2 cut(s)	149, 366
BsrDI	GCAATG	1 cut(s)	189
BssMI	GATC	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	344, 385
Bst6I	CTCTTC	4 cut(s)	58, 149, 342, 366
BstC8I	GCNNGC	2 cut(s)	140, 402
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 266, 275, 284, 323
BstNI	CCWGG	2 cut(s)	344, 385
BstSCI	CCNGG	3 cut(s)	81, 342, 383
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	259, 281, 287
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	140, 402
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	3 cut(s)	79, 116, 117
CpoI	CGGWCCG	1 cut(s)	79
CspI	CGGWCCG	1 cut(s)	79
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	8 cut(s)	104, 118, 142, 254, 260, 272, 287, 388
CviKI_1	RGCY	8 cut(s)	104, 118, 142, 254, 260, 272, 287, 388
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eam1104I	CTCTTC	4 cut(s)	58, 149, 342, 366
EarI	CTCTTC	4 cut(s)	58, 149, 342, 366
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	120, 144
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	342, 383
EcoT38I	GRGCYC	2 cut(s)	120, 144
FaeI	CATG	1 cut(s)	322
FaiI	YATR	4 cut(s)	234, 320, 425, 448
FatI	CATG	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	245, 270, 273, 276
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	2 cut(s)	120, 144
Fsp4HI	GCNGC	4 cut(s)	245, 270, 273, 276
FspBI	CTAG	2 cut(s)	105, 332
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	4 cut(s)	245, 270, 273, 276
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	2 cut(s)	82, 126
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	322
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	170, 309
HpaII	CCGG	2 cut(s)	82, 126
HphI	GGTGA	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	4 cut(s)	126, 263, 332, 392
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	39, 128
HpyCH4V	TGCA	3 cut(s)	4, 275, 326
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 266, 275, 284, 323
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	322
HspAI	GCGC	1 cut(s)	195
Kpn2I	TCCGGA	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	378
LguI	GCTCTTC	2 cut(s)	149, 366
LmnI	GCTCC	3 cut(s)	101, 202, 409
LpnPI	CCDG	8 cut(s)	95, 99, 139, 248, 329, 356, 370, 397
Lsp1109I	GCAGC	3 cut(s)	259, 281, 287
LweI	GCATC	2 cut(s)	199, 226
MaeI	CTAG	2 cut(s)	105, 332
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	2 cut(s)	120, 144
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	2 cut(s)	179, 303
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	29, 32, 59, 277, 328, 417
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	3 cut(s)	176, 353, 363
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	2 cut(s)	82, 126
MspR9I	CCNGG	3 cut(s)	83, 344, 385
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	2 cut(s)	344, 385
MwoI	GCNNNNNNNGC	5 cut(s)	110, 266, 275, 284, 323
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	193
PciSI	GCTCTTC	2 cut(s)	149, 366
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PctI	GAATGC	1 cut(s)	246
PflFI	GACNNNGTC	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	342
PkrI	GCNGC	4 cut(s)	246, 271, 274, 277
PleI	GAGTC	2 cut(s)	178, 303
PpsI	GAGTC	2 cut(s)	178, 303
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	342, 383
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	342, 383
PspN4I	GGNNCC	1 cut(s)	118
PspOMI	GGGCCC	1 cut(s)	116
PspPI	GGNCC	3 cut(s)	79, 116, 117
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	378
PsyI	GACNNNGTC	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	272
Rsr2I	CGGWCCG	1 cut(s)	79
RsrII	CGGWCCG	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	2 cut(s)	149, 366
SaqAI	TTAA	3 cut(s)	176, 353, 363
SatI	GCNGC	4 cut(s)	245, 270, 273, 276
Sau3AI	GATC	1 cut(s)	378
Sau96I	GGNCC	3 cut(s)	79, 116, 117
SchI	GAGTC	2 cut(s)	179, 303
ScrFI	CCNGG	3 cut(s)	83, 344, 385
SduI	GDGCHC	2 cut(s)	120, 144
SetI	ASST	6 cut(s)	21, 106, 144, 256, 262, 274
SfaNI	GCATC	2 cut(s)	199, 226
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	2 cut(s)	7, 244
SspMI	CTAG	2 cut(s)	105, 332
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	81, 342, 383
TaqI	TCGA	1 cut(s)	93
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	427
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	3 cut(s)	176, 353, 363
Tru9I	TTAA	3 cut(s)	176, 353, 363
TseI	GCWGC	3 cut(s)	269, 272, 275
Tth111I	GACNNNGTC	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	427
XbaI	TCTAGA	1 cut(s)	331
XspI	CTAG	2 cut(s)	105, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.