Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Reverse (-)

23903310 .. 23908680

Gene Structure 5371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG153300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAAGCAATCAGAAAGCAAGCCACCAGGCTTCGCGAACAGGTCGCTCGCCAACAACAGGCTGTCCTCAAGCAGTTTGGAGCTGGAGGATATGGAGGTTCAGATAATTTAGTTACTGATGAGGCAGAACTAGTGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTTCGTGGTGTGGAGGGATATATTATCACCGGATCCAAACAGGTTGAAATAGGAACAAAGTTGTCTGAAGATAGCAGGAAATATGGAGCTGAAAATACATGTACTAGTGGTAGTACGTTATCAAGAGCTTCATTAAGCTATGGACGTGCTCGTGCTCAAATGGAGAAGGAACGAGGGAATCTGTTGAAAGCTCTTGGCACACAGGTGGCAGAGCCATTAAGAGCAATGGTAATGGGCGCTCCATTGGAAGATGCTCGGCATCTTGCTCAACGATATGACAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAAGTTTCCAAACGCCAAGCAAAAGTGAGGGAAACACCAGGCAATTCAGATAATGTTATGAAACTAGAAGCAGCAGAAGCAAAGTTGCAAGATCTGAAGTCGAATATGGGTATATTAGGGAAGGAAGCAGCTGCAGCGATGGCAGCAGTCGAGGCTCAACAACAGAGATTGACTCTCCAGAGACTCATTGCCATGGTAGTGCAAGTTCTTTTAAAAAAATTTATAAGTCAACTATGTGAAAAACAGATATCTTTGGCTGTTTTATACTTTTTAAACAAGAAACTAACTTTTGTTGAGATAAAAATTAAAGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

276

Amino Acids

30.65

Weight (kDa)

9.63

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	737
AccII	CGCG	1 cut(s)	36
AclWI	GGATC	2 cut(s)	228, 241
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	3 cut(s)	288, 519, 629
AcvI	CACGTG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	304, 316
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	2 cut(s)	170, 299
AgsI	TTSAA	3 cut(s)	248, 388, 515
AhlI	ACTAGT	2 cut(s)	130, 305
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	26, 550
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	9 cut(s)	83, 157, 290, 329, 339, 392, 497, 503, 644
AluI	AGCT	9 cut(s)	83, 157, 290, 329, 339, 392, 497, 503, 644
Alw21I	GWGCWC	2 cut(s)	352, 358
Alw26I	GTCTC	1 cut(s)	688
AlwI	GGATC	2 cut(s)	228, 241
ApeKI	GCWGC	5 cut(s)	584, 641, 644, 647, 656
ApoI	RAATTY	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	233
BauI	CACGAG	1 cut(s)	351
BbrPI	CACGTG	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	352, 358
BbvI	GCAGC	5 cut(s)	596, 631, 653, 659, 668
BccI	CCATC	2 cut(s)	646, 818
BciT130I	CCWGG	2 cut(s)	28, 552
BcoDI	GTCTC	1 cut(s)	688
BcuI	ACTAGT	2 cut(s)	130, 305
BfaI	CTAG	3 cut(s)	131, 306, 578
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	441
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	5 cut(s)	585, 642, 645, 648, 657
BlsI	GCNGC	5 cut(s)	586, 643, 646, 649, 658
Bme1390I	CCNGG	2 cut(s)	28, 552
BmgBI	CACGTC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	28, 552
BmsI	GCATC	2 cut(s)	442, 469
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	2 cut(s)	105, 674
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	2 cut(s)	53, 170
BsaAI	YACGTR	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	705
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse3DI	GCAATG	2 cut(s)	432, 699
BseBI	CCWGG	2 cut(s)	28, 552
BseDI	CCNNGG	1 cut(s)	705
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	2 cut(s)	432, 699
BseMII	CTCAG	1 cut(s)	518
BseXI	GCAGC	5 cut(s)	596, 631, 653, 659, 668
Bsh1236I	CGCG	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	352, 358
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	688
BsmI	GAATGC	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	352, 358
Bsp143I	GATC	2 cut(s)	233, 604
Bsp19I	CCATGG	1 cut(s)	705
Bsp68I	TCGCGA	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	2 cut(s)	228, 241
BsrDI	GCAATG	2 cut(s)	432, 699
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	2 cut(s)	233, 604
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	28, 552
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	21, 49
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	705
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	2 cut(s)	236, 607
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	2 cut(s)	233, 604
BstMWI	GCNNNNNNNGC	5 cut(s)	590, 647, 653, 656, 665
BstNI	CCWGG	2 cut(s)	28, 552
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	26, 550
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	5 cut(s)	596, 631, 653, 659, 668
BstX2I	RGATCY	2 cut(s)	233, 604
BstYI	RGATCY	2 cut(s)	233, 604
BtgI	CCRYGG	1 cut(s)	705
BtgZI	GCGATG	1 cut(s)	665
BtrI	CACGTC	1 cut(s)	347
BtuMI	TCGCGA	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	21, 49
CfoI	GCGC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	303, 315
CviAII	CATG	2 cut(s)	300, 706
CviQI	GTAC	2 cut(s)	303, 315
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	2 cut(s)	235, 606
DpnII	GATC	2 cut(s)	233, 604
DraI	TTTAAA	2 cut(s)	726, 786
Eco130I	CCWWGG	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	762
Eco57I	CTGAAG	3 cut(s)	288, 519, 629
Eco72I	CACGTG	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	26, 550
EcoRV	GATATC	1 cut(s)	762
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	2 cut(s)	303, 709
FatI	CATG	2 cut(s)	299, 705
Fnu4HI	GCNGC	5 cut(s)	585, 642, 645, 648, 657
Fsp4HI	GCNGC	5 cut(s)	585, 642, 645, 648, 657
FspBI	CTAG	3 cut(s)	131, 306, 578
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	5 cut(s)	585, 642, 645, 648, 657
GsuI	CTGGAG	2 cut(s)	105, 674
HaeII	RGCGCY	1 cut(s)	441
HapII	CCGG	1 cut(s)	231
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	2 cut(s)	303, 709
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	3 cut(s)	379, 685, 696
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	743
Hpy188I	TCNGA	6 cut(s)	14, 103, 144, 268, 562, 609
Hpy188III	TCNNGA	3 cut(s)	35, 324, 691
Hpy8I	GTNNAC	1 cut(s)	743
HpyAV	CCTTC	2 cut(s)	361, 628
HpyCH4IV	ACGT	3 cut(s)	172, 317, 346
HpyCH4V	TGCA	4 cut(s)	136, 601, 647, 715
HpyF10VI	GCNNNNNNNGC	5 cut(s)	590, 647, 653, 656, 665
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	3 cut(s)	172, 317, 346
Hsp92II	CATG	2 cut(s)	303, 709
HspAI	GCGC	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	233, 604
LmnI	GCTCC	3 cut(s)	80, 287, 445
Lsp1109I	GCAGC	5 cut(s)	596, 631, 653, 659, 668
LweI	GCATC	2 cut(s)	442, 469
MaeI	CTAG	3 cut(s)	131, 306, 578
MaeII	ACGT	3 cut(s)	172, 317, 346
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	235, 606
MboI	GATC	2 cut(s)	233, 604
MboII	GAAGA	2 cut(s)	281, 461
MflI	RGATCY	2 cut(s)	233, 604
MhlI	GDGCHC	2 cut(s)	352, 358
MluCI	AATT	4 cut(s)	106, 556, 731, 816
MlyI	GAGTC	2 cut(s)	679, 690
MnlI	CCTC	8 cut(s)	77, 80, 89, 115, 208, 368, 534, 658
MseI	TTAA	5 cut(s)	335, 419, 725, 785, 819
MslI	CAYNNNNRTG	3 cut(s)	404, 704, 710
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	28, 552
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	2 cut(s)	28, 552
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	5 cut(s)	590, 647, 653, 656, 665
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	2 cut(s)	233, 604
NlaIII	CATG	2 cut(s)	303, 709
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	436
NruI	TCGCGA	1 cut(s)	36
NspI	RCATGY	1 cut(s)	303
OliI	CACNNNNGTG	1 cut(s)	404
PciI	ACATGT	1 cut(s)	299
PctI	GAATGC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	5 cut(s)	586, 643, 646, 649, 658
PleI	GAGTC	2 cut(s)	679, 690
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
PpsI	GAGTC	2 cut(s)	679, 690
Ppu21I	YACGTR	1 cut(s)	173
PscI	ACATGT	1 cut(s)	299
PsiI	TTATAA	1 cut(s)	737
Psp6I	CCWGG	2 cut(s)	26, 550
PspCI	CACGTG	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	26, 550
PspN4I	GGNNCC	1 cut(s)	235
PsrI	GAACNNNNNNTAC	2 cut(s)	702, 734
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	233, 604
PvuII	CAGCTG	1 cut(s)	644
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	2 cut(s)	304, 316
RsaNI	GTAC	2 cut(s)	303, 315
RseI	CAYNNNNRTG	3 cut(s)	404, 704, 710
SaqAI	TTAA	5 cut(s)	335, 419, 725, 785, 819
SatI	GCNGC	5 cut(s)	585, 642, 645, 648, 657
Sau3AI	GATC	2 cut(s)	233, 604
SchI	GAGTC	2 cut(s)	679, 690
ScrFI	CCNGG	2 cut(s)	28, 552
SduI	GDGCHC	2 cut(s)	352, 358
SfaNI	GCATC	2 cut(s)	442, 469
SfcI	CTRYAG	1 cut(s)	645
SmiMI	CAYNNNNRTG	3 cut(s)	404, 704, 710
SmlI	CTYRAG	2 cut(s)	68, 149
SmoI	CTYRAG	2 cut(s)	68, 149
SpeI	ACTAGT	2 cut(s)	130, 305
Sse9I	AATT	4 cut(s)	106, 556, 731, 816
SspMI	CTAG	3 cut(s)	131, 306, 578
StyD4I	CCNGG	2 cut(s)	26, 550
StyI	CCWWGG	1 cut(s)	705
TaiI	ACGT	3 cut(s)	175, 320, 349
TaqI	TCGA	2 cut(s)	614, 663
TasI	AATT	4 cut(s)	106, 556, 731, 816
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	5 cut(s)	335, 419, 725, 785, 819
Tru9I	TTAA	5 cut(s)	335, 419, 725, 785, 819
TseI	GCWGC	5 cut(s)	584, 641, 644, 647, 656
TspDTI	ATGAA	2 cut(s)	321, 587
XapI	RAATTY	1 cut(s)	731
XceI	RCATGY	1 cut(s)	303
XspI	CTAG	3 cut(s)	131, 306, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.