Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Forward (+)

9906440 .. 9911134

Gene Structure 4695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1056500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAAGCTATCAGAAAGCAAGCCACCCGGCTTCGCGAACAGGTCGCTAGGCAACAACAGGCTGTCCTCAAGCAGTTTGGAGCTGGAGGATATGGAGGTTCAGATAGTTTAGTAACTGATGAGGCAGAACTCGGGCAGCATCAGAAACTTGAAAAGCTTTACATATCAACACGTGCCGGCAAGCATTATCAAAGGGATATTGTTCGTGGTGTGGAGGGATATATTGTCACCGGGTCCAAACAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGTAGGAAATATGGTGCTGAAAATACGTGTACTAGTGGAAGTACACTATCAAGAGCTTCATTAAGTTATGGGCGTGCTCGTGCTCAAATGGAGAAGGAGCGGGGGAATCTGTTGAAAGCTCTTGGCACACAGGTGGCAGAGCCATTAAGAGCAATGGTAATGGGGGCTCCATTGGAGGATGCTCGGCATCTTGCTCAACGTTATGATAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAAGTTTCCAAACGCCAAGCAAAGGTGAGGGAAACACCAGGAATTTCAGAGAATGTTATGAAAATGGAAGCTGCAGAGTCAAAGCTGCAAGATCTAAAGTCAAATATGGCAATGTTAGGGAAGGAAGCTGCTGCAGCAATGGCAGCTGTTGAGGCTCAGCAACAGAGGTTGACTCTCCAGCGACTCATTGCCATGGTCGAGGCAGAGCGGTCTTATCATCAGAGGGTCCTTCTGATACTTGATCAACTTGAAGGAGAGATGGTAACAGAACGACAACGAATTGAAGCGCCTTCTAGCCCTACTGTTGAAAATGCCATGCCTCCACCACCACCTTATGAAGAAGTTAATGGCATATATGCTTCTCAAACACATAATGGATCGTCAGACAGCATGAATTACTTCTTAGGGGAGGTTATGTTTACATATCAAGCTGTGTCTGACGTAGAGCTCAGTTTATCAGTCGGTGATTATGTTGTTGTGCGAAAGGTGACAAACAATGGTTGGGCGGAAGGCGAATGCAAAGGCAAAGCAGGTTGGTTCCCATTTGGATACATCGAAAGAAAGGAACGAGTTCTCGCAAGCAAGGTGGCTGAAGTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

372

Amino Acids

41.1

Weight (kDa)

7.0

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	309 - 357	1.5e-09	Variant SH3 domain
SH3_2	PF07653	309 - 357	4.7e-08	Variant SH3 domain
SH3_1	PF00018	310 - 352	3.4e-08	SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1034
AccBSI	CCGCTC	2 cut(s)	373, 721
AccII	CGCG	1 cut(s)	36
AciI	CCGC	3 cut(s)	373, 721, 1019
AclI	AACGTT	1 cut(s)	472
AclWI	GGATC	1 cut(s)	898
AcsI	RAATTY	1 cut(s)	555
AcuI	CTGAAG	1 cut(s)	519
AcvI	CACGTG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	304, 316
AfiI	CCNNNNNNNGG	1 cut(s)	535
AflIII	ACRYGT	2 cut(s)	170, 299
AgsI	TTSAA	7 cut(s)	152, 248, 388, 515, 764, 797, 821
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	550
AleI	CACNNNNGTG	1 cut(s)	404
Alw21I	GWGCWC	3 cut(s)	352, 358, 963
AlwI	GGATC	1 cut(s)	898
Ama87I	CYCGRG	1 cut(s)	131
ApeKI	GCWGC	7 cut(s)	136, 584, 598, 641, 644, 647, 656
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	2 cut(s)	911, 1083
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	2 cut(s)	234, 739
AsuC2I	CCSGG	2 cut(s)	28, 232
AsuHPI	GGTGA	4 cut(s)	220, 550, 989, 1012
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	234, 739
BanII	GRGCYC	2 cut(s)	442, 963
BauI	CACGAG	1 cut(s)	351
BbrPI	CACGTG	1 cut(s)	173
Bbv12I	GWGCWC	3 cut(s)	352, 358, 963
BbvI	GCAGC	7 cut(s)	148, 571, 585, 628, 631, 659, 668
BccI	CCATC	1 cut(s)	766
BciT130I	CCWGG	1 cut(s)	552
BciVI	GTATCC	1 cut(s)	1055
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	2 cut(s)	28, 232
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	4 cut(s)	48, 306, 807, 1114
BfmI	CTRYAG	2 cut(s)	585, 645
BfoI	RGCGCY	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	1034
BfuI	GTATCC	1 cut(s)	1055
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	7 cut(s)	138, 586, 600, 643, 646, 649, 658
Bme1390I	CCNGG	3 cut(s)	28, 232, 552
Bme18I	GGWCC	2 cut(s)	234, 739
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	234, 739
BmiI	GGNNCC	4 cut(s)	235, 441, 740, 1052
BmrFI	CCNGG	3 cut(s)	28, 232, 552
BmsI	GCATC	3 cut(s)	148, 442, 469
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	2 cut(s)	105, 674
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	28, 232
BsaAI	YACGTR	2 cut(s)	173, 300
BsaJI	CCNNGG	1 cut(s)	705
BsaXI	ACNNNNNCTCC	4 cut(s)	759, 789, 914, 944
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse118I	RCCGGY	1 cut(s)	176
Bse3DI	GCAATG	4 cut(s)	432, 630, 657, 699
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	705
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMI	GCAATG	4 cut(s)	432, 630, 657, 699
BseMII	CTCAG	3 cut(s)	518, 683, 976
BseXI	GCAGC	7 cut(s)	148, 571, 585, 628, 631, 659, 668
Bsh1236I	CGCG	1 cut(s)	36
BsiHKAI	GWGCWC	3 cut(s)	352, 358, 963
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	28, 177, 231
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmI	GAATGC	2 cut(s)	489, 1034
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	4 cut(s)	352, 358, 442, 963
Bsp143I	GATC	3 cut(s)	604, 754, 890
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	1 cut(s)	705
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	3 cut(s)	373, 721, 1019
BspCNI	CTCAG	3 cut(s)	517, 682, 975
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	235, 441, 740, 1052
BspMAI	CTGCAG	2 cut(s)	589, 649
BspMI	ACCTGC	1 cut(s)	1034
BspPI	GGATC	1 cut(s)	898
BsrBI	CCGCTC	2 cut(s)	373, 721
BsrDI	GCAATG	4 cut(s)	432, 630, 657, 699
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	3 cut(s)	604, 754, 890
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	817
BstBAI	YACGTR	2 cut(s)	173, 300
BstC8I	GCNNGC	5 cut(s)	21, 178, 182, 348, 1093
BstDEI	CTNAG	4 cut(s)	504, 669, 916, 962
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	3 cut(s)	607, 757, 893
BstMBI	GATC	3 cut(s)	604, 754, 890
BstMWI	GCNNNNNNNGC	4 cut(s)	647, 653, 656, 665
BstNI	CCWGG	1 cut(s)	552
BstSCI	CCNGG	3 cut(s)	26, 230, 550
BstSFI	CTRYAG	2 cut(s)	585, 645
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	7 cut(s)	148, 571, 585, 628, 631, 659, 668
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuI	GTATCC	1 cut(s)	1055
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	457
BtuMI	TCGCGA	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	1034
Cac8I	GCNNGC	5 cut(s)	21, 178, 182, 348, 1093
CfoI	GCGC	1 cut(s)	802
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	234, 739
Csp6I	GTAC	2 cut(s)	303, 315
CspCI	CAANNNNNGTGG	2 cut(s)	1080, 1115
CviAII	CATG	3 cut(s)	706, 829, 904
CviQI	GTAC	2 cut(s)	303, 315
DdeI	CTNAG	4 cut(s)	504, 669, 916, 962
DpnI	GATC	3 cut(s)	606, 756, 892
DpnII	GATC	3 cut(s)	604, 754, 890
EciI	GGCGGA	1 cut(s)	1034
Ecl136II	GAGCTC	1 cut(s)	961
Eco130I	CCWWGG	1 cut(s)	705
Eco24I	GRGCYC	2 cut(s)	442, 963
Eco47I	GGWCC	2 cut(s)	234, 739
Eco53kI	GAGCTC	1 cut(s)	961
Eco57I	CTGAAG	1 cut(s)	519
Eco72I	CACGTG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	961
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	705
EcoT38I	GRGCYC	2 cut(s)	442, 963
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	3 cut(s)	709, 832, 907
FatI	CATG	3 cut(s)	705, 828, 903
FauI	CCCGC	1 cut(s)	366
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	2 cut(s)	442, 963
Fsp4HI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
FspBI	CTAG	4 cut(s)	48, 306, 807, 1114
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
GsuI	CTGGAG	2 cut(s)	105, 674
HaeII	RGCGCY	1 cut(s)	803
HapII	CCGG	3 cut(s)	28, 177, 231
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	3 cut(s)	709, 832, 907
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	379, 590, 685, 696
HpaII	CCGG	3 cut(s)	28, 177, 231
HphI	GGTGA	4 cut(s)	220, 550, 989, 1012
Hpy166II	GTNNAC	4 cut(s)	303, 317, 684, 933
Hpy188I	TCNGA	9 cut(s)	14, 103, 144, 268, 562, 735, 747, 898, 952
Hpy188III	TCNNGA	2 cut(s)	35, 324
Hpy8I	GTNNAC	4 cut(s)	303, 317, 684, 933
HpyAV	CCTTC	6 cut(s)	361, 628, 752, 758, 813, 1016
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	4 cut(s)	172, 299, 472, 954
HpyCH4V	TGCA	4 cut(s)	587, 601, 647, 1032
HpyF10VI	GCNNNNNNNGC	4 cut(s)	647, 653, 656, 665
HpyF3I	CTNAG	4 cut(s)	504, 669, 916, 962
HpySE526I	ACGT	4 cut(s)	172, 299, 472, 954
Hsp92II	CATG	3 cut(s)	709, 832, 907
HspAI	GCGC	1 cut(s)	800
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	604, 754, 890
LmnI	GCTCC	3 cut(s)	80, 370, 445
Lsp1109I	GCAGC	7 cut(s)	148, 571, 585, 628, 631, 659, 668
LweI	GCATC	3 cut(s)	148, 442, 469
MaeI	CTAG	4 cut(s)	48, 306, 807, 1114
MaeII	ACGT	4 cut(s)	172, 299, 472, 954
MaeIII	GTNAC	4 cut(s)	112, 226, 775, 1000
MalI	GATC	3 cut(s)	606, 756, 892
MbiI	CCGCTC	2 cut(s)	373, 721
MboI	GATC	3 cut(s)	604, 754, 890
MboII	GAAGA	2 cut(s)	281, 863
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	4 cut(s)	352, 358, 442, 963
MluCI	AATT	3 cut(s)	555, 792, 907
MlyI	GAGTC	3 cut(s)	599, 679, 690
MroNI	GCCGGC	1 cut(s)	176
MroXI	GAANNNNTTC	2 cut(s)	911, 1083
MseI	TTAA	3 cut(s)	335, 419, 858
MslI	CAYNNNNRTG	2 cut(s)	404, 704
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	3 cut(s)	28, 177, 231
MspR9I	CCNGG	3 cut(s)	28, 232, 552
Mva1269I	GAATGC	2 cut(s)	489, 1034
MvaI	CCWGG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	4 cut(s)	647, 653, 656, 665
NaeI	GCCGGC	1 cut(s)	178
NciI	CCSGG	2 cut(s)	28, 232
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	3 cut(s)	604, 754, 890
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	3 cut(s)	709, 832, 907
NlaIV	GGNNCC	4 cut(s)	235, 441, 740, 1052
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	2 cut(s)	226, 1000
NruI	TCGCGA	1 cut(s)	36
OliI	CACNNNNGTG	1 cut(s)	404
PctI	GAATGC	2 cut(s)	489, 1034
PdiI	GCCGGC	1 cut(s)	178
PdmI	GAANNNNTTC	2 cut(s)	911, 1083
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	7 cut(s)	138, 586, 600, 643, 646, 649, 658
PleI	GAGTC	3 cut(s)	598, 679, 690
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
PpsI	GAGTC	3 cut(s)	598, 679, 690
Ppu21I	YACGTR	2 cut(s)	173, 300
PpuMI	RGGWCCY	1 cut(s)	739
Psp124BI	GAGCTC	1 cut(s)	963
Psp1406I	AACGTT	1 cut(s)	472
Psp5II	RGGWCCY	1 cut(s)	739
Psp6I	CCWGG	1 cut(s)	550
PspCI	CACGTG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	4 cut(s)	235, 441, 740, 1052
PspPI	GGNCC	2 cut(s)	234, 739
PspPPI	RGGWCCY	1 cut(s)	739
PstI	CTGCAG	2 cut(s)	589, 649
PsuI	RGATCY	1 cut(s)	604
PvuII	CAGCTG	1 cut(s)	659
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	2 cut(s)	304, 316
RsaNI	GTAC	2 cut(s)	303, 315
RseI	CAYNNNNRTG	2 cut(s)	404, 704
SacI	GAGCTC	1 cut(s)	963
SaqAI	TTAA	3 cut(s)	335, 419, 858
SatI	GCNGC	7 cut(s)	137, 585, 599, 642, 645, 648, 657
Sau3AI	GATC	3 cut(s)	604, 754, 890
Sau96I	GGNCC	2 cut(s)	234, 739
SchI	GAGTC	3 cut(s)	599, 679, 690
ScrFI	CCNGG	3 cut(s)	28, 232, 552
SduI	GDGCHC	4 cut(s)	352, 358, 442, 963
SfaNI	GCATC	3 cut(s)	148, 442, 469
SfcI	CTRYAG	2 cut(s)	585, 645
SinI	GGWCC	2 cut(s)	234, 739
SmiMI	CAYNNNNRTG	2 cut(s)	404, 704
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	3 cut(s)	555, 792, 907
SsiI	CCGC	3 cut(s)	373, 721, 1019
SspMI	CTAG	4 cut(s)	48, 306, 807, 1114
SstI	GAGCTC	1 cut(s)	963
StyD4I	CCNGG	3 cut(s)	26, 230, 550
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	4 cut(s)	175, 302, 475, 957
TaqI	TCGA	2 cut(s)	711, 1068
TasI	AATT	3 cut(s)	555, 792, 907
TatI	WGTACW	2 cut(s)	302, 314
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	335, 419, 858
Tru9I	TTAA	3 cut(s)	335, 419, 858
TseFI	GTSAC	2 cut(s)	226, 1000
TseI	GCWGC	7 cut(s)	136, 584, 598, 641, 644, 647, 656
Tsp45I	GTSAC	2 cut(s)	226, 1000
TspDTI	ATGAA	4 cut(s)	321, 587, 864, 920
VpaK11BI	GGWCC	2 cut(s)	234, 739
XapI	RAATTY	1 cut(s)	555
XmnI	GAANNNNTTC	2 cut(s)	911, 1083
XspI	CTAG	4 cut(s)	48, 306, 807, 1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.