Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8352115.1

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Forward (+)

128 .. 837

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8352115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

atggtctcagagaaacagcgtaaagagtctgctcctcctgtgattccccaggatagcttctcagagaaaacaatgtacttcttggccgaagcaactcattctttcactgctgcatcggagaaggaactgagcttgtcagtgggtgactacgttgttgtgcgaaaggtatctcctctagatcaccgttcaattgttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

66

Amino Acids

7.37

Weight (kDa)

5.58

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	84
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	189
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	57, 132
AluI	AGCT	2 cut(s)	57, 132
Alw26I	GTCTC	1 cut(s)	10
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	155, 173
BbvI	GCAGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	21, 75, 119
BseRI	GAGGAG	2 cut(s)	24, 162
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	3 cut(s)	20, 74, 120
BspTNI	GGTCTC	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	185
BstDEI	CTNAG	3 cut(s)	7, 61, 128
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 144
Csp6I	GTAC	1 cut(s)	76
CviJI	RGCY	3 cut(s)	57, 86, 132
CviKI_1	RGCY	3 cut(s)	57, 86, 132
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	3 cut(s)	7, 61, 128
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	26, 43
HphI	GGTGA	2 cut(s)	155, 173
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	10, 64, 118
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	7, 61, 128
HpySE526I	ACGT	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	35, 51, 62
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MfeI	CAATTG	1 cut(s)	189
MluCI	AATT	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	45, 183
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	50
NdeII	GATC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	4 cut(s)	59, 134, 153, 168
SfaNI	GCATC	1 cut(s)	122
SgeI	CNNG	6 cut(s)	50, 61, 62, 94, 145, 188
Sse9I	AATT	1 cut(s)	189
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	153
TasI	AATT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	43
TscAI	CASTG	2 cut(s)	112, 144
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	143
TspRI	CASTG	2 cut(s)	112, 144
XbaI	TCTAGA	1 cut(s)	175
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.