Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002639.1

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Reverse (-)

34010 .. 36301

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002639.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgatacttggtgctcctttggaagatgctcgtcatcttgctcaacgttatagtcgaatgcggcaggaagcagagacacaggcagttgaagtttccagaaggctagcacgagttaaagaaatcccaaatccagaaaatgttggaaagctgcatgcagcagaaacaaagatgaaagaaataaaagcaaatatggcagttctgggtatagaagcttcagctgccttggctgctgtggaagcacagcagcaaagactaacatttcagaggcttgttgcactggttgaaggagaaaagaattatcatctgagagtggctgccattcttggtgaggttgaagctgagatggtctcagagaaacagcgtaaagagtctgctcctcctgtaattccccaggatagcttctcagagaaaacaatgtacttcttggccgaagcaactcattctttcactgctgcatcggagaaggaactgagcttgtcactgggtgactacgttgttgtgcgaaaggtgagcccatcaggatggtcagaaggagagtgcaaaggcaaaggagggtggtttccatcggcatacgtggagaagcgtcaacggattccgtccactgatctttcttctgaagtttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_1 SH3_9

Protein Analysis

208

Amino Acids

23.08

Weight (kDa)

6.47

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AclI	AACGTT	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	419
AgsI	TTSAA	3 cut(s)	89, 284, 335
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	6 cut(s)	148, 212, 218, 338, 399, 474
AluI	AGCT	6 cut(s)	148, 212, 218, 338, 399, 474
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	68, 352
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	7 cut(s)	148, 155, 218, 227, 244, 314, 452
AsuHPI	GGTGA	3 cut(s)	338, 497, 520
AsuNHI	GCTAGC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	515
BarI	GAAGNNNNNNTAC	2 cut(s)	196, 228
BauI	CACGAG	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	7 cut(s)	135, 167, 205, 214, 256, 301, 439
BccI	CCATC	4 cut(s)	337, 516, 523, 571
BciT130I	CCWGG	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	68, 352
BfaI	CTAG	1 cut(s)	104
BisI	GCNGC	8 cut(s)	62, 149, 156, 219, 228, 245, 315, 453
BlsI	GCNGC	8 cut(s)	63, 150, 157, 220, 229, 246, 316, 454
Bme1390I	CCNGG	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	2 cut(s)	16, 464
BmtI	GCTAGC	1 cut(s)	107
BmuI	ACTGGG	1 cut(s)	491
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BsaAI	YACGTR	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	222, 390
Bse1I	ACTGG	2 cut(s)	282, 486
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	2 cut(s)	222, 390
BseGI	GGATG	1 cut(s)	527
BseMII	CTCAG	5 cut(s)	296, 330, 363, 417, 461
BseNI	ACTGG	2 cut(s)	282, 486
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	7 cut(s)	135, 167, 205, 214, 256, 301, 439
BshFI	GGCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	68, 352
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	428
Bso31I	GGTCTC	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	16, 515
Bsp143I	GATC	1 cut(s)	604
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	5 cut(s)	297, 331, 362, 416, 462
BspOI	GCTAGC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	282, 486
BssECI	CCNNGG	2 cut(s)	222, 390
BssMI	GATC	1 cut(s)	604
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	574
BstC8I	GCNNGC	2 cut(s)	105, 153
BstDEI	CTNAG	5 cut(s)	305, 339, 349, 403, 470
BstF5I	GGATG	1 cut(s)	527
BstKTI	GATC	1 cut(s)	607
BstMAI	GTCTC	2 cut(s)	68, 352
BstMBI	GATC	1 cut(s)	604
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 218, 224, 227, 236
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	390
BstV1I	GCAGC	7 cut(s)	135, 167, 205, 214, 256, 301, 439
BstXI	CCANNNNNNTGG	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	527
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	4 cut(s)	275, 447, 479, 600
Cac8I	GCNNGC	2 cut(s)	105, 153
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	1 cut(s)	152
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	5 cut(s)	305, 339, 349, 403, 470
DpnI	GATC	1 cut(s)	606
DpnII	GATC	1 cut(s)	604
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	155
FaiI	YATR	5 cut(s)	51, 153, 191, 206, 571
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	8 cut(s)	62, 149, 156, 219, 228, 245, 315, 453
FokI	GGATG	1 cut(s)	534
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	8 cut(s)	62, 149, 156, 219, 228, 245, 315, 453
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	8 cut(s)	62, 149, 156, 219, 228, 245, 315, 453
HaeIII	GGCC	1 cut(s)	428
HgaI	GACGC	1 cut(s)	572
Hin1II	CATG	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	587
HindII	GTYRAC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	2 cut(s)	368, 592
HphI	GGTGA	3 cut(s)	338, 497, 520
Hpy166II	GTNNAC	3 cut(s)	587, 600, 622
Hpy188I	TCNGA	7 cut(s)	264, 306, 352, 406, 460, 529, 616
Hpy188III	TCNNGA	3 cut(s)	96, 131, 519
Hpy8I	GTNNAC	3 cut(s)	587, 600, 622
HpyAV	CCTTC	4 cut(s)	93, 278, 457, 524
HpyCH4IV	ACGT	3 cut(s)	46, 492, 573
HpyCH4V	TGCA	5 cut(s)	151, 155, 275, 455, 540
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 218, 224, 227, 236
HpyF3I	CTNAG	5 cut(s)	305, 339, 349, 403, 470
HpySE526I	ACGT	3 cut(s)	46, 492, 573
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	604
LmnI	GCTCC	2 cut(s)	19, 379
Lsp1109I	GCAGC	7 cut(s)	135, 167, 205, 214, 256, 301, 439
LweI	GCATC	2 cut(s)	16, 464
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	3 cut(s)	46, 492, 573
MaeIII	GTNAC	2 cut(s)	477, 485
MalI	GATC	1 cut(s)	606
MboI	GATC	1 cut(s)	604
MboII	GAAGA	2 cut(s)	35, 603
MhlI	GDGCHC	2 cut(s)	16, 515
MluCI	AATT	2 cut(s)	295, 384
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	4 cut(s)	258, 322, 387, 545
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	191, 218, 224, 227, 236
NdeII	GATC	1 cut(s)	604
NheI	GCTAGC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	155
NmuCI	GTSAC	2 cut(s)	477, 485
NspI	RCATGY	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	8 cut(s)	63, 150, 157, 220, 229, 246, 316, 454
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	574
Psp1406I	AACGTT	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	8 cut(s)	62, 149, 156, 219, 228, 245, 315, 453
Sau3AI	GATC	1 cut(s)	604
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	16, 515
SfaNI	GCATC	2 cut(s)	16, 464
SmiMI	CAYNNNNRTG	1 cut(s)	520
SphI	GCATGC	1 cut(s)	155
Sse9I	AATT	2 cut(s)	295, 384
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	3 cut(s)	49, 495, 576
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	295, 384
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	4 cut(s)	282, 454, 486, 607
TseFI	GTSAC	2 cut(s)	477, 485
TseI	GCWGC	7 cut(s)	148, 155, 218, 227, 244, 314, 452
Tsp45I	GTSAC	2 cut(s)	477, 485
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	2 cut(s)	585, 604
TspRI	CASTG	4 cut(s)	282, 454, 486, 607
XceI	RCATGY	1 cut(s)	155
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.