CHD3-type chromatin-remodeling factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G39020 |
| fragaria_vesca | FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182 |
| malus_domestica | MD05G1056500.v1.1 MD10G1064500.v1.1 |
| prunus_persica | Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1 |
| pyrus_communis | pycom05g04810 pycom10g05040 |
| rosa_chinensis | RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341 |
| rosa_laevigata | RLG00000014014 |
| rosa_multiflora | Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00266630 Rroxscaffold_7G00200930 |
| rosa_rugosa | Rorug02G0109200 Rorug06G0031400 |
| rosa_samantha | Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400 |
| rosa_wichuraiana | Rw6G013190 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 86 |
| AluBI | AGCT | 1 cut(s) | 98 |
| AluI | AGCT | 1 cut(s) | 98 |
| ApeKI | GCWGC | 1 cut(s) | 95 |
| AsuHPI | GGTGA | 1 cut(s) | 245 |
| BbvI | GCAGC | 1 cut(s) | 107 |
| BfaI | CTAG | 1 cut(s) | 179 |
| BglII | AGATCT | 1 cut(s) | 222 |
| BisI | GCNGC | 1 cut(s) | 96 |
| BlsI | GCNGC | 1 cut(s) | 97 |
| BmsI | GCATC | 1 cut(s) | 51 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 209, 241 |
| BpmI | CTGGAG | 1 cut(s) | 125 |
| Bse1I | ACTGG | 1 cut(s) | 108 |
| BseNI | ACTGG | 1 cut(s) | 108 |
| BseRI | GAGGAG | 1 cut(s) | 240 |
| BseXI | GCAGC | 1 cut(s) | 107 |
| Bsp143I | GATC | 1 cut(s) | 222 |
| BspQI | GCTCTTC | 1 cut(s) | 210 |
| BsrI | ACTGG | 1 cut(s) | 108 |
| BssMI | GATC | 1 cut(s) | 222 |
| Bst6I | CTCTTC | 1 cut(s) | 210 |
| BstC8I | GCNNGC | 1 cut(s) | 246 |
| BstDEI | CTNAG | 1 cut(s) | 260 |
| BstKTI | GATC | 1 cut(s) | 225 |
| BstMBI | GATC | 1 cut(s) | 222 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 217 |
| BstV1I | GCAGC | 1 cut(s) | 107 |
| BstX2I | RGATCY | 1 cut(s) | 222 |
| BstYI | RGATCY | 1 cut(s) | 222 |
| BtsIMutI | CAGTG | 1 cut(s) | 101 |
| Cac8I | GCNNGC | 1 cut(s) | 246 |
| Csp6I | GTAC | 1 cut(s) | 85 |
| CviAII | CATG | 2 cut(s) | 134, 229 |
| CviJI | RGCY | 4 cut(s) | 11, 98, 178, 267 |
| CviKI_1 | RGCY | 4 cut(s) | 11, 98, 178, 267 |
| CviQI | GTAC | 1 cut(s) | 85 |
| DdeI | CTNAG | 1 cut(s) | 260 |
| DpnI | GATC | 1 cut(s) | 224 |
| DpnII | GATC | 1 cut(s) | 222 |
| DraI | TTTAAA | 1 cut(s) | 199 |
| Eam1104I | CTCTTC | 1 cut(s) | 210 |
| EarI | CTCTTC | 1 cut(s) | 210 |
| FaeI | CATG | 2 cut(s) | 137, 232 |
| FaiI | YATR | 7 cut(s) | 31, 59, 135, 164, 230, 237, 274 |
| FatI | CATG | 2 cut(s) | 133, 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 96 |
| Fsp4HI | GCNGC | 1 cut(s) | 96 |
| FspBI | CTAG | 1 cut(s) | 179 |
| GluI | GCNGC | 1 cut(s) | 96 |
| GsuI | CTGGAG | 1 cut(s) | 125 |
| Hin1II | CATG | 2 cut(s) | 137, 232 |
| HphI | GGTGA | 1 cut(s) | 245 |
| HpyAV | CCTTC | 1 cut(s) | 266 |
| HpyCH4V | TGCA | 1 cut(s) | 57 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 217 |
| HpyF3I | CTNAG | 1 cut(s) | 260 |
| Hsp92II | CATG | 2 cut(s) | 137, 232 |
| Kzo9I | GATC | 1 cut(s) | 222 |
| LguI | GCTCTTC | 1 cut(s) | 210 |
| LmnI | GCTCC | 2 cut(s) | 103, 253 |
| LpnPI | CCDG | 2 cut(s) | 35, 89 |
| Lsp1109I | GCAGC | 1 cut(s) | 107 |
| LweI | GCATC | 1 cut(s) | 51 |
| MaeI | CTAG | 1 cut(s) | 179 |
| MaeIII | GTNAC | 1 cut(s) | 183 |
| MalI | GATC | 1 cut(s) | 224 |
| MboI | GATC | 1 cut(s) | 222 |
| MboII | GAAGA | 1 cut(s) | 227 |
| MfeI | CAATTG | 1 cut(s) | 36 |
| MflI | RGATCY | 1 cut(s) | 222 |
| MluCI | AATT | 1 cut(s) | 36 |
| MnlI | CCTC | 5 cut(s) | 98, 118, 158, 257, 261 |
| MseI | TTAA | 3 cut(s) | 117, 198, 207 |
| MunI | CAATTG | 1 cut(s) | 36 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 217 |
| NdeII | GATC | 1 cut(s) | 222 |
| NlaIII | CATG | 2 cut(s) | 137, 232 |
| PciSI | GCTCTTC | 1 cut(s) | 210 |
| PkrI | GCNGC | 1 cut(s) | 97 |
| PsuI | RGATCY | 1 cut(s) | 222 |
| RsaI | GTAC | 1 cut(s) | 86 |
| RsaNI | GTAC | 1 cut(s) | 85 |
| SapI | GCTCTTC | 1 cut(s) | 210 |
| SaqAI | TTAA | 3 cut(s) | 117, 198, 207 |
| SatI | GCNGC | 1 cut(s) | 96 |
| Sau3AI | GATC | 1 cut(s) | 222 |
| SetI | ASST | 5 cut(s) | 20, 90, 100, 129, 258 |
| SfaNI | GCATC | 1 cut(s) | 51 |
| Sse9I | AATT | 1 cut(s) | 36 |
| SspMI | CTAG | 1 cut(s) | 179 |
| TasI | AATT | 1 cut(s) | 36 |
| Tru1I | TTAA | 3 cut(s) | 117, 198, 207 |
| Tru9I | TTAA | 3 cut(s) | 117, 198, 207 |
| TscAI | CASTG | 1 cut(s) | 108 |
| TseI | GCWGC | 1 cut(s) | 95 |
| TspDTI | ATGAA | 1 cut(s) | 224 |
| TspRI | CASTG | 1 cut(s) | 108 |
| XspI | CTAG | 1 cut(s) | 179 |