Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008034.1

Orthogroup ID

OG0003735

Physical Location & Seq

Genomic Coordinates Reverse (-)

19320 .. 19787

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008034.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggtaatgggcgctccattggaagatgctcggcatcttgctcaacgatatgacagaatgcggcaagaagctgaagctcaggctattgaagtttccaaacaccaatcaaaagtgagggaagcaccgggcaattcagagaatgttatgaaactagaagcagcagacgcaaagttgcaagaaagtcgaatatggaaatactggggaaggaagcagctgcagcagtggcagcagttgaggctcaacaacagatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

84

Amino Acids

10.0

Weight (kDa)

9.69

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39020
fragaria_vesca	FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_2g10160 FvH4_3g27182
malus_domestica	MD05G1056500.v1.1 MD10G1064500.v1.1
prunus_persica	Prupe.8G086700_v2.0.a1 Prupe.8G086700_v2.0.a1
pyrus_communis	pycom05g04810 pycom10g05040
rosa_chinensis	RchiOBHm_Chr2g0102681 RchiOBHm_Chr6g0267341
rosa_laevigata	RLG00000014014
rosa_multiflora	Rmu_co8352115.1_g000001 Rmu_co8477675.1_g000001 Rmu_sc0000693.1_g000022 Rmu_sc0002077.1_g000001 Rmu_sc0002639.1_g000012 Rmu_sc0008034.1_g000007 Rmu_sc0028141.1_g000001 Rmu_sc0040922.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266630 Rroxscaffold_7G00200930
rosa_rugosa	Rorug02G0109200 Rorug06G0031400
rosa_samantha	Rh2CG163000 Rh6AG153300 Rh6BG153000 Rh6CG149200 Rh6DG137400
rosa_wichuraiana	Rw6G013190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	89
AluBI	AGCT	3 cut(s)	71, 77, 214
AluI	AGCT	3 cut(s)	71, 77, 214
ApeKI	GCWGC	5 cut(s)	158, 211, 214, 217, 226
AspLEI	GCGC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	126
BbvI	GCAGC	5 cut(s)	170, 201, 223, 229, 238
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BcnI	CCSGG	1 cut(s)	126
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	15
BisI	GCNGC	6 cut(s)	62, 159, 212, 215, 218, 227
BlsI	GCNGC	6 cut(s)	63, 160, 213, 216, 219, 228
Bme1390I	CCNGG	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	126
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	2 cut(s)	16, 43
BmuI	ACTGGG	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	5 cut(s)	170, 201, 223, 229, 238
BsiSI	CCGG	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 217, 223, 226, 235
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	215
BstV1I	GCAGC	5 cut(s)	170, 201, 223, 229, 238
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	14
CseI	GACGC	1 cut(s)	173
CviJI	RGCY	5 cut(s)	71, 77, 83, 214, 238
CviKI_1	RGCY	5 cut(s)	71, 77, 83, 214, 238
DdeI	CTNAG	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	93
FaiI	YATR	3 cut(s)	51, 146, 190
Fnu4HI	GCNGC	6 cut(s)	62, 159, 212, 215, 218, 227
Fsp4HI	GCNGC	6 cut(s)	62, 159, 212, 215, 218, 227
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	6 cut(s)	62, 159, 212, 215, 218, 227
HaeII	RGCGCY	1 cut(s)	15
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	175, 217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 217, 223, 226, 235
HpyF3I	CTNAG	1 cut(s)	78
HspAI	GCGC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	3 cut(s)	65, 138, 184
Lsp1109I	GCAGC	5 cut(s)	170, 201, 223, 229, 238
LweI	GCATC	2 cut(s)	16, 43
MaeI	CTAG	1 cut(s)	152
MboII	GAAGA	1 cut(s)	35
MluCI	AATT	1 cut(s)	130
MnlI	CCTC	2 cut(s)	108, 228
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	63
MwoI	GCNNNNNNNGC	5 cut(s)	164, 217, 223, 226, 235
NciI	CCSGG	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	10
PctI	GAATGC	1 cut(s)	63
PkrI	GCNGC	6 cut(s)	63, 160, 213, 216, 219, 228
PstI	CTGCAG	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	214
SatI	GCNGC	6 cut(s)	62, 159, 212, 215, 218, 227
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	3 cut(s)	73, 79, 216
SfaNI	GCATC	2 cut(s)	16, 43
SfcI	CTRYAG	1 cut(s)	215
SgeI	CNNG	9 cut(s)	42, 50, 77, 92, 137, 138, 164, 188, 211
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	124
TaqI	TCGA	1 cut(s)	184
TasI	AATT	1 cut(s)	130
TauI	GCSGC	1 cut(s)	64
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	5 cut(s)	158, 211, 214, 217, 226
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	227
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.