Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Forward (+)

632796 .. 635240

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTCCTTCTTTTATTTTTGTAGAAGATCGTCCAGCTCCGCTTGATGCTACTTCTGATCCACCGTCTCTCTTCGACGGAACCACAAGGTTGTACACAAGCTACGTTTGCCCATTTGCTCAACGAGTTTGGATCACTCGAAACTTCAAGGGTTTGCAAGAAAAGATTAAACTTGTTCCTTTGGATCTTGGGAATAGGCCTGCTTGGTACAAGGAGAAAGTATATCCAGAGAACAAGGTGCCAGCGCTTGAGCACAATGGAAAAATCATTGGGGAGAGTCTGGATTTGATTAAATATCTTGATAACACTTTTGAAGGGCCTTCTCTTTACCCCGAGGATCATGCAAAAAGAGAGTTTGGCGACGAGTTGCTCAAGTATACTGATACTTTCGTTAAAACTATGTATGTGTCACTCAAAGGAGACCCCTCTAAAGAAACCGCACCTGTGTTAGATTATCTGGAAAACGCTCTGTATAAGTTCGATGACGGGCCGTTCTTCCTCGGTCAGTTAAGCTTGGTTGATATCGCCTATATCCCGTTCATTGAAAGGTTCCAAACTGTACTCAATGAATTATTTAAGTGCGACATTACTGCCGAACGTCCCAAACTATCAGCATGGATTGAGGAAATTAACAAGAGCGATGGCTATGCACAGACGAAAATGGATCCTAAGGAGATTGTGGAGGTTTTCAAGAAAAAATTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

235

Amino Acids

27.09

Weight (kDa)

5.07

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	30 - 102	3e-06	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	31 - 107	1.1e-23	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	36 - 102	1.6e-18	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	149 - 208	9.4e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	377
AciI	CCGC	2 cut(s)	41, 438
AclWI	GGATC	6 cut(s)	53, 140, 192, 345, 659, 672
AcsI	RAATTY	1 cut(s)	698
AfaI	GTAC	3 cut(s)	95, 209, 561
AfeI	AGCGCT	1 cut(s)	246
AgsI	TTSAA	4 cut(s)	148, 314, 545, 691
AluBI	AGCT	3 cut(s)	38, 102, 513
AluI	AGCT	3 cut(s)	38, 102, 513
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	2 cut(s)	72, 414
AlwI	GGATC	6 cut(s)	53, 140, 192, 345, 659, 672
Ama87I	CYCGRG	1 cut(s)	332
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	3 cut(s)	197, 317, 488
ApoI	RAATTY	1 cut(s)	698
Asp700I	GAANNNNTTC	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	317, 488
AvaI	CYCGRG	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	669
BaeI	ACNNNNGTAYC	2 cut(s)	375, 408
BamHI	GGATCC	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	1 cut(s)	635
BceAI	ACGGC	1 cut(s)	475
BcgI	CGANNNNNNTGC	6 cut(s)	323, 357, 572, 606, 629, 663
BcoDI	GTCTC	2 cut(s)	72, 414
BfoI	RGCGCY	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	317, 488
BmiI	GGNNCC	5 cut(s)	6, 82, 240, 551, 666
BmsI	GCATC	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	269, 356
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	333, 499
Bse21I	CCTNAGG	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	333, 499
BshFI	GGCC	3 cut(s)	199, 319, 490
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	585
BsmAI	GTCTC	2 cut(s)	72, 414
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	585
BsnI	GGCC	3 cut(s)	199, 319, 490
Bso31I	GGTCTC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	6 cut(s)	28, 58, 132, 184, 337, 664
BspACI	CCGC	2 cut(s)	41, 438
BspANI	GGCC	3 cut(s)	199, 319, 490
BspLI	GGNNCC	5 cut(s)	6, 82, 240, 551, 666
BspPI	GGATC	6 cut(s)	53, 140, 192, 345, 659, 672
BspT107I	GGYRCC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	333, 499
BssMI	GATC	6 cut(s)	28, 58, 132, 184, 337, 664
BssNAI	GTATAC	1 cut(s)	378
Bst1107I	GTATAC	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	66, 559
Bst6I	CTCTTC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	201, 243
BstDEI	CTNAG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	6 cut(s)	31, 61, 135, 187, 340, 667
BstMAI	GTCTC	2 cut(s)	72, 414
BstMBI	GATC	6 cut(s)	28, 58, 132, 184, 337, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstX2I	RGATCY	2 cut(s)	184, 664
BstYI	RGATCY	2 cut(s)	184, 664
BstZ17I	GTATAC	1 cut(s)	378
Bsu36I	CCTNAGG	1 cut(s)	669
BsuRI	GGCC	3 cut(s)	199, 319, 490
BtgZI	GCGATG	1 cut(s)	654
Cac8I	GCNNGC	2 cut(s)	201, 243
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	317, 488
Csp6I	GTAC	3 cut(s)	94, 208, 560
CviAII	CATG	3 cut(s)	341, 615, 703
CviJI	RGCY	8 cut(s)	5, 38, 102, 199, 319, 490, 513, 645
CviKI_1	RGCY	8 cut(s)	5, 38, 102, 199, 319, 490, 513, 645
CviQI	GTAC	3 cut(s)	94, 208, 560
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	6 cut(s)	30, 60, 134, 186, 339, 666
DpnII	GATC	6 cut(s)	28, 58, 132, 184, 337, 664
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco147I	AGGCCT	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	523
Eco47III	AGCGCT	1 cut(s)	246
Eco81I	CCTNAGG	1 cut(s)	669
Eco88I	CYCGRG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRV	GATATC	1 cut(s)	523
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	3 cut(s)	344, 618, 706
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	3 cut(s)	340, 614, 702
FblI	GTMKAC	1 cut(s)	377
GlaI	GCGC	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	199, 319, 490
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	3 cut(s)	344, 618, 706
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	511
HinfI	GANTC	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	96, 378
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	5 cut(s)	227, 281, 299, 458, 691
Hpy8I	GTNNAC	2 cut(s)	96, 378
Hpy99I	CGWCG	2 cut(s)	80, 365
HpyAV	CCTTC	3 cut(s)	18, 308, 330
HpyCH4III	ACNGT	2 cut(s)	66, 559
HpyCH4IV	ACGT	2 cut(s)	105, 598
HpyCH4V	TGCA	3 cut(s)	157, 344, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	2 cut(s)	105, 598
Hsp92II	CATG	3 cut(s)	344, 618, 706
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	6 cut(s)	28, 58, 132, 184, 337, 664
LmnI	GCTCC	2 cut(s)	10, 43
LpnPI	CCDG	7 cut(s)	48, 213, 240, 255, 266, 443, 456
LweI	GCATC	1 cut(s)	37
MaeII	ACGT	2 cut(s)	105, 598
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	6 cut(s)	30, 60, 134, 186, 339, 666
MboI	GATC	6 cut(s)	28, 58, 132, 184, 337, 664
MboII	GAAGA	3 cut(s)	38, 64, 487
MflI	RGATCY	2 cut(s)	184, 664
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	3 cut(s)	569, 627, 698
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	5 cut(s)	328, 436, 509, 616, 676
MroXI	GAANNNNTTC	1 cut(s)	698
MseI	TTAA	6 cut(s)	168, 291, 393, 509, 576, 630
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	6 cut(s)	28, 58, 132, 184, 337, 664
NlaIII	CATG	3 cut(s)	344, 618, 706
NlaIV	GGNNCC	5 cut(s)	6, 82, 240, 551, 666
NmuCI	GTSAC	1 cut(s)	408
PceI	AGGCCT	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	698
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PspN4I	GGNNCC	5 cut(s)	6, 82, 240, 551, 666
PspPI	GGNCC	2 cut(s)	317, 488
PsuI	RGATCY	2 cut(s)	184, 664
RsaI	GTAC	3 cut(s)	95, 209, 561
RsaNI	GTAC	3 cut(s)	94, 208, 560
SaqAI	TTAA	6 cut(s)	168, 291, 393, 509, 576, 630
Sau3AI	GATC	6 cut(s)	28, 58, 132, 184, 337, 664
Sau96I	GGNCC	2 cut(s)	317, 488
SchI	GAGTC	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	1 cut(s)	37
SmlI	CTYRAG	2 cut(s)	248, 371
SmoI	CTYRAG	2 cut(s)	248, 371
Sse9I	AATT	3 cut(s)	569, 627, 698
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	41, 438
StuI	AGGCCT	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	66, 559
TaiI	ACGT	2 cut(s)	108, 601
TaqI	TCGA	3 cut(s)	75, 139, 480
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	3 cut(s)	569, 627, 698
TatI	WGTACW	2 cut(s)	93, 559
Tru1I	TTAA	6 cut(s)	168, 291, 393, 509, 576, 630
Tru9I	TTAA	6 cut(s)	168, 291, 393, 509, 576, 630
TseFI	GTSAC	1 cut(s)	408
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	3 cut(s)	529, 582, 691
TspGWI	ACGGA	1 cut(s)	93
XapI	RAATTY	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.