Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Reverse (-)

24221968 .. 24224309

Gene Structure 2342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G244700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTTACAAACATGAGGATCTTTCTCCACCGTTGGATTCCACTTCCAGCCCGCCTCCTCTTTTTGATGGCACTACAAGGCTGTACGTATGTTATACCTGCCCATTTGCACAGCGGGTGTGGATCACTAGGAATTATAAGGGTTTGCAAGATAAGATCAAGTTAGTCCCTATAAATCTTCAAAACAGGCCTGCTTGGTACAAGGAAAAGGTCTATCCTGAGAATAAGGTGCCATCACTGGAGCACAATGGAAAGGTCATTGGAGAGAGTCTTGATCTGATCAAATATGTGGATAATAACTTTGAAGGGCCTTCACTTTTCCCCACTGATCCTGAGAGAAGAAAGTTTGGTGAAGAACTAATAACCTACACTGATACCTTCACTAGGGCCTTGTATTCTTCATTCAAAGGAGACGCAGCAAAAGAAGCCGATGCTCAGTTTGATTACTTAGAGAATGCTCTTAAAAAGTTTGATGATGGGCCATTCTTTCTGGGTCAGTTCAGTTTGGTGGACATAGCCTATATCCCGTTTGTTGAGAGATTGCAAGTCTTCTTATCAGAGGTGTTCAAGTATGACATCACAGCAGGCAGGCCTAAACTAGCAGCATGGTTTGAGGAAATCAACAAGATTGAAGCTTATAAGGTGACCAAAACTGATCCAAAACAGCTTGTTGAATTCTACAAGAAGCGCTTCTTGGACCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

236

Amino Acids

27.35

Weight (kDa)

5.85

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	138, 639
Acc36I	ACCTGC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	229
AciI	CCGC	2 cut(s)	53, 115
AclWI	GGATC	4 cut(s)	27, 131, 323, 650
AcsI	RAATTY	1 cut(s)	674
AfaI	GTAC	2 cut(s)	86, 200
AfeI	AGCGCT	1 cut(s)	689
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	6 cut(s)	182, 305, 406, 568, 632, 674
AjuI	GAANNNNNNNTTGG	1 cut(s)	677
AluBI	AGCT	2 cut(s)	635, 667
AluI	AGCT	2 cut(s)	635, 667
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	4 cut(s)	27, 131, 323, 650
Aor51HI	AGCGCT	1 cut(s)	689
AoxI	GGCC	5 cut(s)	188, 308, 387, 479, 590
ApeKI	GCWGC	2 cut(s)	416, 602
ApoI	RAATTY	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	690
AspS9I	GGNCC	4 cut(s)	308, 387, 479, 697
AsuHPI	GGTGA	2 cut(s)	362, 655
AvaII	GGWCC	1 cut(s)	697
BanI	GGYRCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	428, 614
BccI	CCATC	3 cut(s)	62, 241, 470
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	3 cut(s)	129, 384, 599
BfoI	RGCGCY	1 cut(s)	691
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	417, 603
BlsI	GCNGC	2 cut(s)	418, 604
Bme18I	GGWCC	1 cut(s)	697
BmgT120I	GGNCC	4 cut(s)	308, 387, 479, 697
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	210, 324, 449
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	428, 614
BshFI	GGCC	5 cut(s)	190, 310, 389, 481, 592
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	1 cut(s)	405
BsmBI	CGTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	5 cut(s)	190, 310, 389, 481, 592
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	7 cut(s)	19, 123, 156, 274, 279, 328, 655
BspACI	CCGC	2 cut(s)	53, 115
BspANI	GGCC	5 cut(s)	190, 310, 389, 481, 592
BspCNI	CTCAG	3 cut(s)	211, 325, 448
BspLI	GGNNCC	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	4 cut(s)	27, 131, 323, 650
BspT107I	GGYRCC	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	243
BssMI	GATC	7 cut(s)	19, 123, 156, 274, 279, 328, 655
Bst4CI	ACNGT	2 cut(s)	33, 705
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	4 cut(s)	53, 192, 586, 590
BstDEI	CTNAG	4 cut(s)	219, 333, 435, 448
BstEII	GGTNACC	1 cut(s)	643
BstENI	CCTNNNNNAGG	1 cut(s)	382
BstH2I	RGCGCY	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	7 cut(s)	22, 126, 159, 277, 282, 331, 658
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	7 cut(s)	19, 123, 156, 274, 279, 328, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstPI	GGTNACC	1 cut(s)	643
BstSNI	TACGTA	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	428, 614
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	5 cut(s)	190, 310, 389, 481, 592
BtsIMutI	CAGTG	3 cut(s)	236, 324, 369
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	4 cut(s)	53, 192, 586, 590
CfoI	GCGC	1 cut(s)	690
Cfr13I	GGNCC	4 cut(s)	308, 387, 479, 697
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	85, 199
CviAII	CATG	2 cut(s)	14, 606
CviQI	GTAC	2 cut(s)	85, 199
DdeI	CTNAG	4 cut(s)	219, 333, 435, 448
DpnI	GATC	7 cut(s)	21, 125, 158, 276, 281, 330, 657
DpnII	GATC	7 cut(s)	19, 123, 156, 274, 279, 328, 655
Eco105I	TACGTA	1 cut(s)	88
Eco147I	AGGCCT	2 cut(s)	190, 592
Eco47I	GGWCC	1 cut(s)	697
Eco47III	AGCGCT	1 cut(s)	689
Eco91I	GGTNACC	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	382
EcoO109I	RGGNCCY	2 cut(s)	308, 387
EcoO65I	GGTNACC	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	674
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	2 cut(s)	17, 609
FalI	AAGNNNNNCTT	3 cut(s)	674, 706, 677
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	13, 605
FauI	CCCGC	2 cut(s)	60, 108
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	417, 603
Fsp4HI	GCNGC	2 cut(s)	417, 603
FspBI	CTAG	3 cut(s)	129, 384, 599
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	2 cut(s)	417, 603
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	691
HaeIII	GGCC	5 cut(s)	190, 310, 389, 481, 592
HgaI	GACGC	1 cut(s)	422
HhaI	GCGC	1 cut(s)	690
Hin1II	CATG	2 cut(s)	17, 609
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HindIII	AAGCTT	1 cut(s)	633
HinfI	GANTC	2 cut(s)	38, 268
HphI	GGTGA	2 cut(s)	362, 655
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	279, 559
Hpy188III	TCNNGA	3 cut(s)	218, 272, 332
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	3 cut(s)	299, 321, 388
HpyCH4III	ACNGT	2 cut(s)	33, 705
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	110, 148, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	4 cut(s)	219, 333, 435, 448
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	17, 609
HspAI	GCGC	1 cut(s)	688
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	7 cut(s)	19, 123, 156, 274, 279, 328, 655
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	2 cut(s)	428, 614
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	3 cut(s)	129, 384, 599
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	7 cut(s)	21, 125, 158, 276, 281, 330, 657
MboI	GATC	7 cut(s)	19, 123, 156, 274, 279, 328, 655
MboII	GAAGA	5 cut(s)	170, 351, 365, 390, 541
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	133, 674
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	10, 66, 69, 553, 607
MroXI	GAANNNNTTC	1 cut(s)	689
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	460
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	7 cut(s)	19, 123, 156, 274, 279, 328, 655
NlaIII	CATG	2 cut(s)	17, 609
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	643
PceI	AGGCCT	2 cut(s)	190, 592
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	689
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	418, 604
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	88
PsiI	TTATAA	2 cut(s)	138, 639
PspEI	GGTNACC	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	4 cut(s)	308, 387, 479, 697
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	2 cut(s)	86, 200
RsaNI	GTAC	2 cut(s)	85, 199
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	2 cut(s)	417, 603
Sau3AI	GATC	7 cut(s)	19, 123, 156, 274, 279, 328, 655
Sau96I	GGNCC	4 cut(s)	308, 387, 479, 697
SchI	GAGTC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	1 cut(s)	697
SnaBI	TACGTA	1 cut(s)	88
Sse9I	AATT	2 cut(s)	133, 674
SseBI	AGGCCT	2 cut(s)	190, 592
SsiI	CCGC	2 cut(s)	53, 115
SspMI	CTAG	3 cut(s)	129, 384, 599
StuI	AGGCCT	2 cut(s)	190, 592
TaaI	ACNGT	2 cut(s)	33, 705
TaiI	ACGT	1 cut(s)	90
TasI	AATT	2 cut(s)	133, 674
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	3 cut(s)	243, 331, 376
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	2 cut(s)	416, 602
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	1 cut(s)	390
TspRI	CASTG	3 cut(s)	243, 331, 376
VpaK11BI	GGWCC	1 cut(s)	697
XagI	CCTNNNNNAGG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	3 cut(s)	129, 384, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.