Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Reverse (-)

13102770 .. 13103977

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10340.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGTACAAGCATGAGGAACTTCCTCCACCGTTGGATTCCACTTCCTCCCCTCCTCCTCTCTTTGACGGCACTACAAGGTTGTACGTAAATTACATATGTCCATTTGCACAGCGGGTTTGGATCACTAGGAACTATAAGGGTTTGCAAGACAAGATTAAGTTAGTGGGTATAGATCTTGAAAACAGGCCTGCTTGGTACAAGGAAAAGGTCTACCCCGGAAACAAGGTGCCATCTCTGGAGCACAATGGAAAAGTCATTGGAGAAAGTCTAGATCGATCAAATACCTCGAAAGCAACTTCGAAGGGCCTTCACTTGTCCCCAATGACGACCCTGAGAGAAAAAAGTTTGGCGAAGAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

122

Amino Acids

13.75

Weight (kDa)

9.46

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	131
AfaI	GTAC	3 cut(s)	8, 86, 200
AgsI	TTSAA	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	2 cut(s)	188, 307
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	219
AsuII	TTCGAA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	219
BfaI	CTAG	2 cut(s)	129, 272
BglII	AGATCT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	45, 48
BshFI	GGCC	2 cut(s)	190, 309
BshNI	GGYRCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	190, 309
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	123, 175, 274, 278
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	2 cut(s)	190, 309
BspCNI	CTCAG	1 cut(s)	327
BspDI	ATCGAT	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	4 cut(s)	123, 175, 274, 278
Bst4CI	ACNGT	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	335
BstKTI	GATC	4 cut(s)	126, 178, 277, 281
BstMBI	GATC	4 cut(s)	123, 175, 274, 278
BstSCI	CCNGG	1 cut(s)	217
BstSNI	TACGTA	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	190, 309
BsuTUI	ATCGAT	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	7, 85, 199
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	2 cut(s)	190, 309
CviKI_1	RGCY	2 cut(s)	190, 309
CviQI	GTAC	3 cut(s)	7, 85, 199
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	4 cut(s)	125, 177, 276, 280
DpnII	GATC	4 cut(s)	123, 175, 274, 278
Eco105I	TACGTA	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	307
FaeI	CATG	1 cut(s)	17
FaiI	YATR	5 cut(s)	15, 98, 100, 138, 173
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	13
FauI	CCCGC	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	98
FblI	GTMKAC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	129, 272
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	190, 309
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188III	TCNNGA	3 cut(s)	179, 239, 272
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	298, 320
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	110, 148
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	17
Kzo9I	GATC	4 cut(s)	123, 175, 274, 278
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	5 cut(s)	172, 204, 224, 232, 347
MaeI	CTAG	2 cut(s)	129, 272
MaeII	ACGT	1 cut(s)	87
MalI	GATC	4 cut(s)	125, 177, 276, 280
MboI	GATC	4 cut(s)	123, 175, 274, 278
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	91, 358
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	10, 36, 58, 63, 66, 69, 298
MseI	TTAA	2 cut(s)	159, 364
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	219
NciI	CCSGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	4 cut(s)	123, 175, 274, 278
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	231
NspV	TTCGAA	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	3 cut(s)	8, 86, 200
RsaNI	GTAC	3 cut(s)	7, 85, 199
SaqAI	TTAA	2 cut(s)	159, 364
Sau3AI	GATC	4 cut(s)	123, 175, 274, 278
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	5 cut(s)	83, 90, 213, 231, 290
SfuI	TTCGAA	1 cut(s)	302
SnaBI	TACGTA	1 cut(s)	88
Sse9I	AATT	2 cut(s)	91, 358
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	129, 272
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	277, 290, 302
TasI	AATT	2 cut(s)	91, 358
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	159, 364
Tru9I	TTAA	2 cut(s)	159, 364
XbaI	TCTAGA	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	129, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.