Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Reverse (-)

35432215 .. 35434526

Gene Structure 2312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTATACTCAGGAGGATCTTCCCACACCGTTGGATGCCACTTCCAACCCACCTCCTCTCTTTGATGGCACTACAAGGTTGTATACATATTACTCATGCCCATTTGCACAGAGGGTGTGGATCACTAGGAATTATAAGGGTTTACAAGATCAGATTAAGTTGGTTCCTTTAAATCTCCAAAACAGGCCTGCTTGGTACAAGGAAAAGGTCTACCCTGAGAATAAGGTGCCAGCGCTGGAGCACAATGGAAAGATCATAGGGGAGAGTCTTGATCTGATCAAATATGTAGATAGCAACTTTGAAGGGCCTTCACTTTTCCCCAAAGACCCTGAGAAAGCAAAGTTTGGTGAGGAATTAATATCACATGTAGGCACCTTCACCGGGGCTTTGTACACTGCATTCAAAGCAAATGACACAGTTAAACAAGCTGATGCTCAGTTTGATTACCTGGAAAATGCTCTGAAAAAATTTGACGATGGGCCATTTTTCCTGGGTCAGTTCAGTTTGGCGGACATAGCCTATATCCCATTTGTTGAGAGATTCCAAAGCTTCTTGTCAGAGGTGTGGAAGGAAATCAACAAGATTGATGCTTATAAGGTAACCAAAACTGATCCAAAAGAGCTAGTTGGATTCTACAAGAAACGCTTCTTGGAGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

221

Amino Acids

25.49

Weight (kDa)

5.55

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	26 - 98	9.4e-08	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	28 - 104	5.2e-24	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	34 - 99	2.2e-18	Glutathione S-transferase, N-terminal domain
GST_C_5	PF16865	121 - 188	3.8e-06	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	141 - 184	2.6e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	138, 597
AccB1I	GGYRCC	2 cut(s)	229, 374
AccI	GTMKAC	2 cut(s)	86, 213
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	3 cut(s)	27, 131, 608
AcsI	RAATTY	1 cut(s)	470
AfaI	GTAC	2 cut(s)	200, 395
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	305, 406
AjnI	CCWGG	2 cut(s)	450, 492
AjuI	GAANNNNNNNTTGG	1 cut(s)	635
AluBI	AGCT	3 cut(s)	431, 552, 625
AluI	AGCT	3 cut(s)	431, 552, 625
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	3 cut(s)	27, 131, 608
Aor51HI	AGCGCT	1 cut(s)	237
AoxI	GGCC	3 cut(s)	188, 308, 482
ApoI	RAATTY	1 cut(s)	470
AseI	ATTAAT	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	308, 482
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	362, 373
BanI	GGYRCC	2 cut(s)	229, 374
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	2 cut(s)	62, 473
BciT130I	CCWGG	2 cut(s)	452, 494
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	385
BfaI	CTAG	2 cut(s)	129, 626
BfoI	RGCGCY	1 cut(s)	239
Bme1390I	CCNGG	3 cut(s)	385, 452, 494
BmgT120I	GGNCC	2 cut(s)	308, 482
BmiI	GGNNCC	3 cut(s)	168, 231, 376
BmrFI	CCNGG	3 cut(s)	385, 452, 494
BmsI	GCATC	3 cut(s)	28, 424, 580
BpmI	CTGGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	384, 493
BsaXI	ACNNNNNCTCC	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	452, 494
BseDI	CCNNGG	2 cut(s)	384, 493
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	26, 210, 324, 452
BseRI	GAGGAG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	190, 310, 484
BshNI	GGYRCC	2 cut(s)	229, 374
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	190, 310, 484
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 613
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	3 cut(s)	190, 310, 484
BspCNI	CTCAG	4 cut(s)	25, 211, 325, 451
BspLI	GGNNCC	3 cut(s)	168, 231, 376
BspPI	GGATC	3 cut(s)	27, 131, 608
BspT107I	GGYRCC	2 cut(s)	229, 374
BsrGI	TGTACA	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	384, 493
BssMI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 613
BssNAI	GTATAC	1 cut(s)	87
Bst1107I	GTATAC	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	452, 494
Bst4CI	ACNGT	3 cut(s)	33, 421, 663
BstAUI	TGTACA	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	192, 234
BstDEI	CTNAG	4 cut(s)	12, 219, 333, 438
BstEII	GGTNACC	1 cut(s)	601
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	7 cut(s)	22, 126, 154, 258, 277, 282, 616
BstMBI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 518
BstNI	CCWGG	2 cut(s)	452, 494
BstNSI	RCATGY	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	601
BstSCI	CCNGG	3 cut(s)	383, 450, 492
BstX2I	RGATCY	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	19
BstZ17I	GTATAC	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	190, 310, 484
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	192, 234
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	308, 482
Csp6I	GTAC	2 cut(s)	199, 394
CviAII	CATG	2 cut(s)	99, 368
CviJI	RGCY	9 cut(s)	5, 190, 310, 389, 431, 484, 521, 552, 625
CviKI_1	RGCY	9 cut(s)	5, 190, 310, 389, 431, 484, 521, 552, 625
CviQI	GTAC	2 cut(s)	199, 394
DdeI	CTNAG	4 cut(s)	12, 219, 333, 438
DpnI	GATC	7 cut(s)	21, 125, 153, 257, 276, 281, 615
DpnII	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 613
DraI	TTTAAA	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	527
Eco147I	AGGCCT	1 cut(s)	190
Eco47III	AGCGCT	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	450, 492
FaeI	CATG	2 cut(s)	102, 371
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FatI	CATG	2 cut(s)	98, 367
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	2 cut(s)	86, 213
FokI	GGATG	1 cut(s)	50
FspBI	CTAG	2 cut(s)	129, 626
GlaI	GCGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	3 cut(s)	190, 310, 484
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	102, 371
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	3 cut(s)	268, 543, 633
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	362, 373
Hpy166II	GTNNAC	4 cut(s)	87, 146, 214, 396
Hpy188I	TCNGA	4 cut(s)	156, 279, 465, 562
Hpy188III	TCNNGA	2 cut(s)	14, 272
Hpy8I	GTNNAC	4 cut(s)	87, 146, 214, 396
HpyAV	CCTTC	4 cut(s)	299, 321, 388, 565
HpyCH4III	ACNGT	3 cut(s)	33, 421, 663
HpyCH4V	TGCA	2 cut(s)	110, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 518
HpyF3I	CTNAG	4 cut(s)	12, 219, 333, 438
Hsp92II	CATG	2 cut(s)	102, 371
HspAI	GCGC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 613
LmnI	GCTCC	2 cut(s)	241, 655
LweI	GCATC	3 cut(s)	28, 424, 580
MaeI	CTAG	2 cut(s)	129, 626
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	7 cut(s)	21, 125, 153, 257, 276, 281, 615
MboI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 613
MboII	GAAGA	1 cut(s)	14
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	133, 356, 470
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	3 cut(s)	15, 72, 610
MnlI	CCTC	6 cut(s)	10, 66, 69, 108, 346, 556
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	4 cut(s)	159, 173, 359, 423
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	3 cut(s)	385, 452, 494
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	2 cut(s)	452, 494
MwoI	GCNNNNNNNGC	2 cut(s)	407, 518
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 613
NlaIII	CATG	2 cut(s)	102, 371
NlaIV	GGNNCC	3 cut(s)	168, 231, 376
NspI	RCATGY	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	190
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	543, 633
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	359
PsiI	TTATAA	2 cut(s)	138, 597
Psp6I	CCWGG	2 cut(s)	450, 492
PspEI	GGTNACC	1 cut(s)	601
PspGI	CCWGG	2 cut(s)	450, 492
PspN4I	GGNNCC	3 cut(s)	168, 231, 376
PspPI	GGNCC	2 cut(s)	308, 482
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	2 cut(s)	200, 395
RsaNI	GTAC	2 cut(s)	199, 394
SaqAI	TTAA	4 cut(s)	159, 173, 359, 423
Sau3AI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 613
Sau96I	GGNCC	2 cut(s)	308, 482
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	385, 452, 494
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	3 cut(s)	28, 424, 580
Sse9I	AATT	3 cut(s)	133, 356, 470
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	2 cut(s)	129, 626
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	3 cut(s)	383, 450, 492
TaaI	ACNGT	3 cut(s)	33, 421, 663
TasI	AATT	3 cut(s)	133, 356, 470
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	543, 633
Tru1I	TTAA	4 cut(s)	159, 173, 359, 423
Tru9I	TTAA	4 cut(s)	159, 173, 359, 423
TscAI	CASTG	1 cut(s)	403
TspRI	CASTG	1 cut(s)	403
VspI	ATTAAT	1 cut(s)	359
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	86, 213
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	129, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.