Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021707.1

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Forward (+)

161 .. 1351

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021707.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggcttacactcaggaggttcttcccacacccttggatgccacttccaacccaccccctctctttgatggcactacaaggttgtatacatattactcatgcccatttgcacagagggtgtggatcactaggaattataagggtttacaagatcagattaagttggttcctataaatctccaaaacaggcctgcttggtacaaggaaaaggtctaccctgagaataaggtgccagcgctggagcacaatggaaagatcataggggagagtcttgatctgatcaaatatgtagatagcaactttgaagggccttcacttttccccaaagaccctgagaaagcaaagtttggtgaggaattaatatcacatgtcggcaccttcaccggggctttgtatactgcattcaaagcaaatgacacagttaaacaagctggtaaggatcctaatgttctcccattagggactgcttttcttgataaatttactctgaccaaaaatggttccctgcatcagatgctcagtttgattacctggaaaatgctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

181

Amino Acids

20.44

Weight (kDa)

8.51

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AccB1I	GGYRCC	2 cut(s)	229, 374
AccI	GTMKAC	3 cut(s)	86, 213, 395
AclWI	GGATC	3 cut(s)	131, 434, 447
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	1 cut(s)	200
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	305, 406
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	3 cut(s)	131, 434, 447
Aor51HI	AGCGCT	1 cut(s)	237
AoxI	GGCC	2 cut(s)	188, 308
ApoI	RAATTY	1 cut(s)	479
AseI	ATTAAT	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	362, 373
BamHI	GGATCC	1 cut(s)	439
BanI	GGYRCC	2 cut(s)	229, 374
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	532
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	385
BfaI	CTAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	239
Bme1390I	CCNGG	2 cut(s)	385, 532
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	5 cut(s)	168, 231, 376, 441, 502
BmrFI	CCNGG	2 cut(s)	385, 532
BmsI	GCATC	3 cut(s)	28, 504, 517
BpmI	CTGGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	33, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	2 cut(s)	33, 384
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	26, 210, 324, 532
BshFI	GGCC	2 cut(s)	190, 310
BshNI	GGYRCC	2 cut(s)	229, 374
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	2 cut(s)	190, 310
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	123, 151, 255, 274, 279, 439
BspANI	GGCC	2 cut(s)	190, 310
BspCNI	CTCAG	4 cut(s)	25, 211, 325, 531
BspLI	GGNNCC	5 cut(s)	168, 231, 376, 441, 502
BspPI	GGATC	3 cut(s)	131, 434, 447
BspT107I	GGYRCC	2 cut(s)	229, 374
BssECI	CCNNGG	2 cut(s)	33, 384
BssMI	GATC	6 cut(s)	123, 151, 255, 274, 279, 439
BssNAI	GTATAC	2 cut(s)	87, 396
BssT1I	CCWWGG	1 cut(s)	33
Bst1107I	GTATAC	2 cut(s)	87, 396
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	192, 234
BstDEI	CTNAG	4 cut(s)	12, 219, 333, 518
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	6 cut(s)	126, 154, 258, 277, 282, 442
BstMBI	GATC	6 cut(s)	123, 151, 255, 274, 279, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 514
BstNI	CCWGG	1 cut(s)	532
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	383, 530
BstX2I	RGATCY	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	439
BstZ17I	GTATAC	2 cut(s)	87, 396
BsuRI	GGCC	2 cut(s)	190, 310
BtsCI	GGATG	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	192, 234
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	99, 368
CviJI	RGCY	5 cut(s)	5, 190, 310, 389, 431
CviKI_1	RGCY	5 cut(s)	5, 190, 310, 389, 431
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	4 cut(s)	12, 219, 333, 518
DpnI	GATC	6 cut(s)	125, 153, 257, 276, 281, 441
DpnII	GATC	6 cut(s)	123, 151, 255, 274, 279, 439
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	190
Eco47III	AGCGCT	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	102, 371
FaiI	YATR	9 cut(s)	87, 91, 100, 138, 173, 260, 288, 369, 396
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	2 cut(s)	98, 367
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	3 cut(s)	86, 213, 395
FokI	GGATG	1 cut(s)	50
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	190, 310
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	102, 371
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	362, 373
Hpy166II	GTNNAC	4 cut(s)	87, 146, 214, 396
Hpy188I	TCNGA	5 cut(s)	156, 279, 489, 513, 545
Hpy188III	TCNNGA	3 cut(s)	14, 272, 473
Hpy8I	GTNNAC	4 cut(s)	87, 146, 214, 396
HpyAV	CCTTC	3 cut(s)	299, 321, 388
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	3 cut(s)	110, 401, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 514
HpyF3I	CTNAG	4 cut(s)	12, 219, 333, 518
Hsp92II	CATG	2 cut(s)	102, 371
HspAI	GCGC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	123, 151, 255, 274, 279, 439
LmnI	GCTCC	1 cut(s)	241
LweI	GCATC	3 cut(s)	28, 504, 517
MaeI	CTAG	1 cut(s)	129
MalI	GATC	6 cut(s)	125, 153, 257, 276, 281, 441
MboI	GATC	6 cut(s)	123, 151, 255, 274, 279, 439
MboII	GAAGA	1 cut(s)	14
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	133, 356, 479
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	4 cut(s)	10, 69, 108, 346
MseI	TTAA	3 cut(s)	159, 359, 423
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	2 cut(s)	385, 532
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	407, 514
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	6 cut(s)	123, 151, 255, 274, 279, 439
NlaIII	CATG	2 cut(s)	102, 371
NlaIV	GGNNCC	5 cut(s)	168, 231, 376, 441, 502
NspI	RCATGY	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	190
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	1 cut(s)	401
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	5 cut(s)	168, 231, 376, 441, 502
PspPI	GGNCC	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	3 cut(s)	159, 359, 423
Sau3AI	GATC	6 cut(s)	123, 151, 255, 274, 279, 439
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	385, 532
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	21, 83, 213, 231, 380, 433, 533
SfaNI	GCATC	3 cut(s)	28, 504, 517
Sse9I	AATT	3 cut(s)	133, 356, 479
SseBI	AGGCCT	1 cut(s)	190
SspMI	CTAG	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	383, 530
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	421
TasI	AATT	3 cut(s)	133, 356, 479
Tru1I	TTAA	3 cut(s)	159, 359, 423
Tru9I	TTAA	3 cut(s)	159, 359, 423
VspI	ATTAAT	1 cut(s)	359
XapI	RAATTY	1 cut(s)	479
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	3 cut(s)	86, 213, 395
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.