Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Reverse (-)

13096341 .. 13097762

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10330.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATTTTTTCGAGATTTTGTTTTTCTGGTTTGCAAGACAAGATTAAATTAGTCGGTATAGATCTTCAAAACAGGCCTGATTGGTACAAGGAAAAGGTCTACCCTGAAAACAAGGTGCCATCTCTGGAGCACAATGGAAAAGTCATTGGAGAGAGTCTTGACCTGATCAAATACCTCGAAAACAACTTCGAAGGGCCTTCACTTGTCCCCAATGACAACCCTGAGAGAAAAAAGTTTGGCAAAGAATTATTAACTTATGTCGATACCTTCGTGGGGTCCTTGTTTCGCTCATTGAAAGGAGACACGGTAAAAGCAGCTGATGAGCAGTTTGATTACTTGGAAAATGCTCTTAAGAAATTTGACGACGGGCCGTATCTTCTGGGCCAGTTTAGTTTGGTGGACATAGCCTATCTCCCGTTCGTTGAGCGGTTCCAAGCCTTCTTATCAGACGTATTCAAGTATGACATCACAGCTGGGAGGCCTAAACTAGCAGCATTCTTGGAGGAAATCAACAAGATTGAGGCATACAAGGTAACCAAAGCTGATCCAAAGGAGATTGTTGCAGTGTTCAAGAAGCACTTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

196

Amino Acids

22.4

Weight (kDa)

5.82

Isoelectric Point (pI)

23.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	356
AdeI	CACNNNGTG	1 cut(s)	583
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	273
AflII	CTTAAG	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	68, 295, 457, 571
AluBI	AGCT	3 cut(s)	317, 473, 542
AluI	AGCT	3 cut(s)	317, 473, 542
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	5 cut(s)	74, 194, 368, 382, 479
ApeKI	GCWGC	2 cut(s)	314, 491
ApoI	RAATTY	1 cut(s)	356
AspS9I	GGNCC	4 cut(s)	194, 276, 368, 382
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	276
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BanI	GGYRCC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	326, 503
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	355
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	488
BfrI	CTTAAG	1 cut(s)	350
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	2 cut(s)	315, 492
BlsI	GCNGC	2 cut(s)	316, 493
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	4 cut(s)	194, 276, 368, 382
BmiI	GGNNCC	3 cut(s)	117, 277, 431
BpmI	CTGGAG	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	326, 503
BseYI	CCCAGC	1 cut(s)	473
BshFI	GGCC	5 cut(s)	76, 196, 370, 384, 481
BshNI	GGYRCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	5 cut(s)	76, 196, 370, 384, 481
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	61, 165, 544
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	5 cut(s)	76, 196, 370, 384, 481
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	3 cut(s)	117, 277, 431
BspPI	GGATC	1 cut(s)	539
BspT104I	TTCGAA	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	115
BspTI	CTTAAG	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	385
BssMI	GATC	3 cut(s)	61, 165, 544
Bst4CI	ACNGT	1 cut(s)	307
BstAFI	CTTAAG	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	222, 580
BstEII	GGTNACC	1 cut(s)	532
BstKTI	GATC	3 cut(s)	64, 168, 547
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	61, 165, 544
BstPI	GGTNACC	1 cut(s)	532
BstV1I	GCAGC	2 cut(s)	326, 503
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	5 cut(s)	76, 196, 370, 384, 481
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	570
Cfr13I	GGNCC	4 cut(s)	194, 276, 368, 382
Csp6I	GTAC	1 cut(s)	85
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	222, 580
DpnI	GATC	3 cut(s)	63, 167, 546
DpnII	GATC	3 cut(s)	61, 165, 544
DraIII	CACNNNGTG	1 cut(s)	583
Eco147I	AGGCCT	2 cut(s)	76, 481
Eco47I	GGWCC	1 cut(s)	276
Eco91I	GGTNACC	1 cut(s)	532
EcoO109I	RGGNCCY	2 cut(s)	194, 276
EcoO65I	GGTNACC	1 cut(s)	532
FaiI	YATR	5 cut(s)	59, 258, 404, 462, 526
FalI	AAGNNNNNCTT	1 cut(s)	563
FaqI	GGGAC	1 cut(s)	191
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	315, 492
Fsp4HI	GCNGC	2 cut(s)	315, 492
FspBI	CTAG	1 cut(s)	488
GluI	GCNGC	2 cut(s)	315, 492
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	5 cut(s)	76, 196, 370, 384, 481
HinfI	GANTC	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	100, 400
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	4 cut(s)	12, 125, 158, 571
Hpy8I	GTNNAC	2 cut(s)	100, 400
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	4 cut(s)	185, 207, 277, 448
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	2 cut(s)	34, 563
HpyF3I	CTNAG	2 cut(s)	222, 580
HpySE526I	ACGT	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	61, 165, 544
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	2 cut(s)	326, 503
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	3 cut(s)	63, 167, 546
MbiI	CCGCTC	1 cut(s)	427
MboI	GATC	3 cut(s)	61, 165, 544
MboII	GAAGA	2 cut(s)	56, 368
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	3 cut(s)	47, 245, 356
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	185, 471, 496, 514
MseI	TTAA	3 cut(s)	45, 251, 351
MspA1I	CMGCKG	2 cut(s)	317, 473
MspCI	CTTAAG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	494
NdeII	GATC	3 cut(s)	61, 165, 544
NlaIV	GGNNCC	3 cut(s)	117, 277, 431
NspV	TTCGAA	1 cut(s)	189
PceI	AGGCCT	2 cut(s)	76, 481
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	494
PkrI	GCNGC	2 cut(s)	316, 493
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PpuMI	RGGWCCY	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	276
PspEI	GGTNACC	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	473
PspN4I	GGNNCC	3 cut(s)	117, 277, 431
PspPI	GGNCC	4 cut(s)	194, 276, 368, 382
PspPPI	RGGWCCY	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	2 cut(s)	317, 473
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	45, 251, 351
SatI	GCNGC	2 cut(s)	315, 492
Sau3AI	GATC	3 cut(s)	61, 165, 544
Sau96I	GGNCC	4 cut(s)	194, 276, 368, 382
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	47, 245, 356
SseBI	AGGCCT	2 cut(s)	76, 481
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	488
StuI	AGGCCT	2 cut(s)	76, 481
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	11, 177, 189, 261
TasI	AATT	3 cut(s)	47, 245, 356
Tru1I	TTAA	3 cut(s)	45, 251, 351
Tru9I	TTAA	3 cut(s)	45, 251, 351
TscAI	CASTG	1 cut(s)	570
TseI	GCWGC	2 cut(s)	314, 491
TspRI	CASTG	1 cut(s)	570
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.