Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Forward (+)

19792538 .. 19797896

Gene Structure 5359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1112100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCGTACAAGCATGAGGAACTTCCTCCACCGTTGGATTCCACTTCCTCCCCCCCCCCTCTCTTTGACGGCACTACAAGGCTGTACGTAAATTACACAAGTCCATTTGCACAGCGGGTTTGGATCACTAGGAACTACAAGGGTTTGCAAGGCAAGATTAAGTTAGTGGGTATAGATCTTGAAAACAGGCCTGCTTGGTACAAGGAAAAAGTCTACCCCGGAAACAAGGTGCCATCTCTGGAGCACAATGGAAAAGTCATTGGAGAAAGTCTTGATCTGATCAAATACCTCGAAAGCAACTTCGAAGGGCCTTCACTTGTCCCCAATGACGACCCTGGGAGAAAAAAGTTTGGCGAAGAATTATTAACTTATGTTGTTACCTTCGTGGGGTCCTTGTATCGCTCATTGAAAGGAGACACGGTAAAAGCAGCTGATGAGCAGTTTGATTACTTGGAAAATGCTCTTAAGAAATTTGACGATGGACCATATCTTCTGGGTCAGTTCAGTTTGGTGGACATAGCCTATATCCCGTTCGTTGAGCAGTTCCAAGTCTTCTTATCAGACGTGTTCAAGTATGACATCACAGCTGGGAGGCCTAAACTAGCAGCATTCTTGGAGGTGGAGTTCGAAATCAACAAGATTGTGGCATACAAGGTAACCAAAGCTGATCCAAAGGAGATTGCTGCAGCGTACAAGAAGAAATTCCTGGAGCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

240

Amino Acids

27.21

Weight (kDa)

5.85

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	27 - 98	4.9e-06	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	28 - 104	1.2e-21	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	33 - 99	2.4e-17	Glutathione S-transferase, N-terminal domain
GST_C_5	PF16865	120 - 207	8.9e-08	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	142 - 206	3.1e-09	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	2 cut(s)	131, 662
AcsI	RAATTY	2 cut(s)	470, 701
AfaI	GTAC	4 cut(s)	8, 86, 200, 692
AfiI	CCNNNNNNNGG	1 cut(s)	387
AflII	CTTAAG	1 cut(s)	464
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	3 cut(s)	182, 409, 571
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	2 cut(s)	334, 705
AloI	GAACNNNNNNTCC	2 cut(s)	608, 640
AluBI	AGCT	3 cut(s)	431, 587, 665
AluI	AGCT	3 cut(s)	431, 587, 665
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	131, 662
AoxI	GGCC	3 cut(s)	188, 308, 593
ApeKI	GCWGC	4 cut(s)	428, 605, 683, 686
ApoI	RAATTY	2 cut(s)	470, 701
Asp700I	GAANNNNTTC	1 cut(s)	701
AspS9I	GGNCC	3 cut(s)	308, 390, 482
AsuC2I	CCSGG	1 cut(s)	219
AsuII	TTCGAA	2 cut(s)	303, 627
AvaII	GGWCC	2 cut(s)	390, 482
BanI	GGYRCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	4 cut(s)	440, 617, 670, 698
BccI	CCATC	2 cut(s)	241, 473
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	336, 707
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	2 cut(s)	129, 602
BfmI	CTRYAG	1 cut(s)	684
BfrI	CTTAAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	4 cut(s)	429, 606, 684, 687
BlsI	GCNGC	4 cut(s)	430, 607, 685, 688
Bme1390I	CCNGG	3 cut(s)	219, 336, 707
Bme18I	GGWCC	2 cut(s)	390, 482
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	3 cut(s)	308, 390, 482
BmiI	GGNNCC	2 cut(s)	231, 391
BmrFI	CCNGG	3 cut(s)	219, 336, 707
BpiI	GAAGAC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	260
Bpu14I	TTCGAA	2 cut(s)	303, 627
BpuMI	CCSGG	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	217, 334, 335
BsaXI	ACNNNNNCTCC	5 cut(s)	405, 435, 608, 638, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	336, 707
BseDI	CCNNGG	3 cut(s)	217, 334, 335
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseXI	GCAGC	4 cut(s)	440, 617, 670, 698
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	3 cut(s)	190, 310, 595
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	3 cut(s)	190, 310, 595
Bsp119I	TTCGAA	2 cut(s)	303, 627
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	123, 175, 274, 279, 667
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	3 cut(s)	190, 310, 595
BspLI	GGNNCC	2 cut(s)	231, 391
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	2 cut(s)	131, 662
BspT104I	TTCGAA	2 cut(s)	303, 627
BspT107I	GGYRCC	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	217, 334, 335
BssMI	GATC	5 cut(s)	123, 175, 274, 279, 667
Bst2UI	CCWGG	2 cut(s)	336, 707
Bst4CI	ACNGT	3 cut(s)	33, 421, 717
BstAFI	CTTAAG	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	88
BstBI	TTCGAA	2 cut(s)	303, 627
BstC8I	GCNNGC	1 cut(s)	192
BstEII	GGTNACC	1 cut(s)	655
BstKTI	GATC	5 cut(s)	126, 178, 277, 282, 670
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	5 cut(s)	123, 175, 274, 279, 667
BstNI	CCWGG	2 cut(s)	336, 707
BstPI	GGTNACC	1 cut(s)	655
BstSCI	CCNGG	3 cut(s)	217, 334, 705
BstSFI	CTRYAG	1 cut(s)	684
BstSNI	TACGTA	1 cut(s)	88
BstV1I	GCAGC	4 cut(s)	440, 617, 670, 698
BstV2I	GAAGAC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	190, 310, 595
BtrI	CACGTC	1 cut(s)	565
Cac8I	GCNNGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	308, 390, 482
Csp6I	GTAC	4 cut(s)	7, 85, 199, 691
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	8 cut(s)	82, 190, 310, 431, 521, 587, 595, 665
CviKI_1	RGCY	8 cut(s)	82, 190, 310, 431, 521, 587, 595, 665
CviQI	GTAC	4 cut(s)	7, 85, 199, 691
DpnI	GATC	5 cut(s)	125, 177, 276, 281, 669
DpnII	GATC	5 cut(s)	123, 175, 274, 279, 667
Eco105I	TACGTA	1 cut(s)	88
Eco147I	AGGCCT	2 cut(s)	190, 595
Eco47I	GGWCC	2 cut(s)	390, 482
Eco91I	GGTNACC	1 cut(s)	655
EcoO109I	RGGNCCY	2 cut(s)	308, 390
EcoO65I	GGTNACC	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	334, 705
FaeI	CATG	1 cut(s)	17
FaiI	YATR	8 cut(s)	15, 173, 372, 487, 518, 525, 576, 649
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	13
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	429, 606, 684, 687
Fsp4HI	GCNGC	4 cut(s)	429, 606, 684, 687
FspBI	CTAG	2 cut(s)	129, 602
GluI	GCNGC	4 cut(s)	429, 606, 684, 687
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	190, 310, 595
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	2 cut(s)	214, 514
Hpy188I	TCNGA	2 cut(s)	279, 562
Hpy188III	TCNNGA	3 cut(s)	179, 239, 272
Hpy8I	GTNNAC	2 cut(s)	214, 514
HpyAV	CCTTC	3 cut(s)	299, 321, 391
HpyCH4III	ACNGT	3 cut(s)	33, 421, 717
HpyCH4IV	ACGT	2 cut(s)	87, 564
HpyCH4V	TGCA	3 cut(s)	110, 148, 686
HpySE526I	ACGT	2 cut(s)	87, 564
Hsp92II	CATG	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	123, 175, 274, 279, 667
LmnI	GCTCC	2 cut(s)	241, 709
LpnPI	CCDG	9 cut(s)	172, 204, 224, 232, 321, 348, 479, 573, 692
Lsp1109I	GCAGC	4 cut(s)	440, 617, 670, 698
MaeI	CTAG	2 cut(s)	129, 602
MaeII	ACGT	2 cut(s)	87, 564
MaeIII	GTNAC	2 cut(s)	376, 655
MalI	GATC	5 cut(s)	125, 177, 276, 281, 669
MboI	GATC	5 cut(s)	123, 175, 274, 279, 667
MboII	GAAGA	4 cut(s)	368, 482, 544, 709
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	91, 359, 470, 701
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	10, 36, 58, 69, 299, 585, 610
MroXI	GAANNNNTTC	1 cut(s)	701
MseI	TTAA	3 cut(s)	159, 365, 465
MspA1I	CMGCKG	3 cut(s)	115, 431, 587
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	3 cut(s)	219, 336, 707
Mva1269I	GAATGC	1 cut(s)	608
MvaI	CCWGG	2 cut(s)	336, 707
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	5 cut(s)	123, 175, 274, 279, 667
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	2 cut(s)	231, 391
NspV	TTCGAA	2 cut(s)	303, 627
PasI	CCCWGGG	1 cut(s)	335
PceI	AGGCCT	2 cut(s)	190, 595
PctI	GAATGC	1 cut(s)	608
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	38
PfoI	TCCNGGA	1 cut(s)	705
PkrI	GCNGC	4 cut(s)	430, 607, 685, 688
Ppu21I	YACGTR	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	334, 705
PspEI	GGTNACC	1 cut(s)	655
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	334, 705
PspN4I	GGNNCC	2 cut(s)	231, 391
PspPI	GGNCC	3 cut(s)	308, 390, 482
PspPPI	RGGWCCY	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	2 cut(s)	431, 587
RsaI	GTAC	4 cut(s)	8, 86, 200, 692
RsaNI	GTAC	4 cut(s)	7, 85, 199, 691
SaqAI	TTAA	3 cut(s)	159, 365, 465
SatI	GCNGC	4 cut(s)	429, 606, 684, 687
Sau3AI	GATC	5 cut(s)	123, 175, 274, 279, 667
Sau96I	GGNCC	3 cut(s)	308, 390, 482
ScrFI	CCNGG	3 cut(s)	219, 336, 707
SduI	GDGCHC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	684
SfuI	TTCGAA	2 cut(s)	303, 627
SinI	GGWCC	2 cut(s)	390, 482
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SnaBI	TACGTA	1 cut(s)	88
Sse9I	AATT	4 cut(s)	91, 359, 470, 701
SseBI	AGGCCT	2 cut(s)	190, 595
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	129, 602
StuI	AGGCCT	2 cut(s)	190, 595
StyD4I	CCNGG	3 cut(s)	217, 334, 705
TaaI	ACNGT	3 cut(s)	33, 421, 717
TaiI	ACGT	2 cut(s)	90, 567
TaqI	TCGA	3 cut(s)	291, 303, 627
TasI	AATT	4 cut(s)	91, 359, 470, 701
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	3 cut(s)	159, 365, 465
Tru9I	TTAA	3 cut(s)	159, 365, 465
TseI	GCWGC	4 cut(s)	428, 605, 683, 686
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	390, 482
XapI	RAATTY	2 cut(s)	470, 701
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	2 cut(s)	129, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.