Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Forward (+)

12431771 .. 12434206

Gene Structure 2436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTTATACTCAGGAGGATCTTCCCACACCCTTGGATGCCACTTCCAACCCACCTCCTCTCTTTGATGGCACTACAAGGTTGTATACCTATTACTCTTGCCCATTTGCACAGAGGGTGTGGATCACCAGGAATTATAAGGGTTTACAAGATCAGATTAAGTTAGTCCCTTTAAATCTCCAAAACAGGCCTGCTTGGTACAAGGAAAAGGTCTACCCTGAGAATAAGGTGCCAGCACTGGAGCACAATGGAAAGATCATAGGGGAGAGTCTTGATCTGATCAAATATGTGGATAGCAACTTTGAAGGGCCTTCACTTTTCCCCAAAGACCCTGAGAAAGCAAAGTTTGGTGAAGAATTAATATCACATGTCGGTACCTTCACCGGGGCTTTGTATACTGCATTCAAAGCAAATGACACGGTAAAACAAGCCGGTAAGGATCTTAATGTTCTCCCATTAGGGACTGCTTTTGTTGATGAATGTACTCTGACTAAAAATGGTTCCCTGCATCAGATGCTCAGTTTGATTACCTGGAAAATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

181

Amino Acids

20.42

Weight (kDa)

6.3

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	26 - 98	6.1e-08	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	28 - 104	3.3e-24	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	34 - 99	1.5e-18	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
Acc65I	GGTACC	1 cut(s)	374
AccB1I	GGYRCC	2 cut(s)	229, 374
AccI	GTMKAC	3 cut(s)	86, 213, 395
AclWI	GGATC	3 cut(s)	27, 131, 447
AfaI	GTAC	3 cut(s)	200, 376, 484
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	305, 406
AjnI	CCWGG	2 cut(s)	128, 530
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	3 cut(s)	27, 131, 447
AoxI	GGCC	2 cut(s)	188, 308
AseI	ATTAAT	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	3 cut(s)	118, 362, 373
BanI	GGYRCC	2 cut(s)	229, 374
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	130, 532
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	385
Bme1390I	CCNGG	3 cut(s)	130, 385, 532
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	3 cut(s)	231, 376, 502
BmrFI	CCNGG	3 cut(s)	130, 385, 532
BmsI	GCATC	3 cut(s)	28, 504, 517
BpmI	CTGGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	33, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	130, 532
BseDI	CCNNGG	2 cut(s)	33, 384
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	26, 210, 324, 532
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	190, 310
BshNI	GGYRCC	2 cut(s)	229, 374
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	384, 432
BslFI	GGGAC	2 cut(s)	152, 475
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmFI	GGGAC	2 cut(s)	152, 475
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	2 cut(s)	190, 310
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 439
BspANI	GGCC	2 cut(s)	190, 310
BspCNI	CTCAG	4 cut(s)	25, 211, 325, 531
BspLI	GGNNCC	3 cut(s)	231, 376, 502
BspPI	GGATC	3 cut(s)	27, 131, 447
BspT107I	GGYRCC	2 cut(s)	229, 374
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	33, 384
BssMI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 439
BssNAI	GTATAC	2 cut(s)	87, 396
BssT1I	CCWWGG	1 cut(s)	33
Bst1107I	GTATAC	2 cut(s)	87, 396
Bst2UI	CCWGG	2 cut(s)	130, 532
Bst4CI	ACNGT	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	192, 234
BstDEI	CTNAG	4 cut(s)	12, 219, 333, 518
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	7 cut(s)	22, 126, 154, 258, 277, 282, 442
BstMBI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 514
BstNI	CCWGG	2 cut(s)	130, 532
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	128, 383, 530
BstX2I	RGATCY	2 cut(s)	19, 439
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	2 cut(s)	19, 439
BstZ17I	GTATAC	2 cut(s)	87, 396
BsuRI	GGCC	2 cut(s)	190, 310
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	192, 234
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	3 cut(s)	199, 375, 483
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	5 cut(s)	5, 190, 310, 389, 431
CviKI_1	RGCY	5 cut(s)	5, 190, 310, 389, 431
CviQI	GTAC	3 cut(s)	199, 375, 483
DdeI	CTNAG	4 cut(s)	12, 219, 333, 518
DpnI	GATC	7 cut(s)	21, 125, 153, 257, 276, 281, 441
DpnII	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 439
DraI	TTTAAA	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	128, 530
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	371
FaiI	YATR	7 cut(s)	9, 87, 138, 260, 288, 369, 396
FaqI	GGGAC	2 cut(s)	152, 475
FatI	CATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	3 cut(s)	86, 213, 395
FokI	GGATG	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	190, 310
HapII	CCGG	2 cut(s)	384, 432
Hin1II	CATG	1 cut(s)	371
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	2 cut(s)	384, 432
HphI	GGTGA	3 cut(s)	118, 362, 373
Hpy166II	GTNNAC	4 cut(s)	87, 146, 214, 396
Hpy188I	TCNGA	5 cut(s)	156, 279, 489, 513, 545
Hpy188III	TCNNGA	2 cut(s)	14, 272
Hpy8I	GTNNAC	4 cut(s)	87, 146, 214, 396
HpyAV	CCTTC	3 cut(s)	299, 321, 388
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	3 cut(s)	110, 401, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 514
HpyF3I	CTNAG	4 cut(s)	12, 219, 333, 518
Hsp92II	CATG	1 cut(s)	371
KpnI	GGTACC	1 cut(s)	378
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 439
LmnI	GCTCC	1 cut(s)	241
LweI	GCATC	3 cut(s)	28, 504, 517
MalI	GATC	7 cut(s)	21, 125, 153, 257, 276, 281, 441
MboI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 439
MboII	GAAGA	2 cut(s)	14, 365
MflI	RGATCY	2 cut(s)	19, 439
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	133, 356
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	4 cut(s)	10, 66, 69, 108
MseI	TTAA	4 cut(s)	159, 173, 359, 444
MspI	CCGG	2 cut(s)	384, 432
MspR9I	CCNGG	3 cut(s)	130, 385, 532
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	2 cut(s)	130, 532
MwoI	GCNNNNNNNGC	2 cut(s)	407, 514
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 439
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	3 cut(s)	231, 376, 502
NspI	RCATGY	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	190
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	1 cut(s)	401
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	128, 530
PspGI	CCWGG	2 cut(s)	128, 530
PspN4I	GGNNCC	3 cut(s)	231, 376, 502
PspPI	GGNCC	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	19, 439
RsaI	GTAC	3 cut(s)	200, 376, 484
RsaNI	GTAC	3 cut(s)	199, 375, 483
SaqAI	TTAA	4 cut(s)	159, 173, 359, 444
Sau3AI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 439
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	130, 385, 532
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	58, 83, 92, 213, 231, 380, 533
SfaNI	GCATC	3 cut(s)	28, 504, 517
Sse9I	AATT	2 cut(s)	133, 356
SseBI	AGGCCT	1 cut(s)	190
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	3 cut(s)	128, 383, 530
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	421
TasI	AATT	2 cut(s)	133, 356
TatI	WGTACW	1 cut(s)	482
Tru1I	TTAA	4 cut(s)	159, 173, 359, 444
Tru9I	TTAA	4 cut(s)	159, 173, 359, 444
TscAI	CASTG	1 cut(s)	243
TspDTI	ATGAA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	243
VspI	ATTAAT	1 cut(s)	359
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	3 cut(s)	86, 213, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.