Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Forward (+)

14153689 .. 14155615

Gene Structure 1927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG163600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTTACACTCAGGAGGTTCTTCCCACACCCTTGGATGCCACTTCCAACCCACCCCCTCTCTTTGATGGCACTACAAGGTTGTATACAAATTACTCATGCCCATTTGCACAGAGGGTGTGGATCACTAGGAATTATAAGGGTTTACAAGATCAGATTAAGTTGGTTCCTATAAATCTCCAAAACAGGCCTGCTTGGTACAAGGAAAAGGTCTACCCTGAGAATAAGGTGCCAGCGCTGGAGCACAATGGAAAGATCATAGGGGAGAGTCTTGATCTGATCAAATATGTAGATAGCAACTTTGAAGGGCCTTCACTTTTCCCCAAAGACCCTGAGAAAGCAAAGTTTGGTGAGGAATTAATATCACATGTCGGCACCTTCACCGGGGCTTTGTATACTGCATTCAAAGCAAATGACACAGTTAAACAAGCTGGTAAGGATCCTAATGAAATCAACAAGATTGATGCTTATAAGGTAACCAAAACTGATCCAAAGGAGCTAGTTGGATTCTACAAGAAGCGCTTCTTGGAGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

179

Amino Acids

20.4

Weight (kDa)

8.46

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	26 - 98	7.7e-08	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	28 - 104	2e-23	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	34 - 99	2.2e-18	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	138, 471
AccB1I	GGYRCC	2 cut(s)	229, 374
AccI	GTMKAC	3 cut(s)	86, 213, 395
AclWI	GGATC	4 cut(s)	131, 434, 447, 482
AfaI	GTAC	1 cut(s)	200
AfeI	AGCGCT	2 cut(s)	237, 521
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	305, 406
AjuI	GAANNNNNNNTTGG	1 cut(s)	509
AluBI	AGCT	2 cut(s)	431, 499
AluI	AGCT	2 cut(s)	431, 499
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	4 cut(s)	131, 434, 447, 482
Aor51HI	AGCGCT	2 cut(s)	237, 521
AoxI	GGCC	2 cut(s)	188, 308
AseI	ATTAAT	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	238, 522
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	362, 373
BamHI	GGATCC	1 cut(s)	439
BanI	GGYRCC	2 cut(s)	229, 374
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	385
BfaI	CTAG	2 cut(s)	129, 500
BfoI	RGCGCY	2 cut(s)	239, 523
Bme1390I	CCNGG	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	4 cut(s)	168, 231, 376, 441
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	2 cut(s)	28, 454
BpmI	CTGGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	33, 384
BsaXI	ACNNNNNCTCC	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	33, 384
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	26, 210, 324
BshFI	GGCC	2 cut(s)	190, 310
BshNI	GGYRCC	2 cut(s)	229, 374
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	2 cut(s)	190, 310
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	7 cut(s)	123, 151, 255, 274, 279, 439, 487
BspANI	GGCC	2 cut(s)	190, 310
BspCNI	CTCAG	3 cut(s)	25, 211, 325
BspLI	GGNNCC	4 cut(s)	168, 231, 376, 441
BspPI	GGATC	4 cut(s)	131, 434, 447, 482
BspT107I	GGYRCC	2 cut(s)	229, 374
BssECI	CCNNGG	2 cut(s)	33, 384
BssMI	GATC	7 cut(s)	123, 151, 255, 274, 279, 439, 487
BssNAI	GTATAC	2 cut(s)	87, 396
BssT1I	CCWWGG	1 cut(s)	33
Bst1107I	GTATAC	2 cut(s)	87, 396
Bst4CI	ACNGT	2 cut(s)	421, 537
BstC8I	GCNNGC	2 cut(s)	192, 234
BstDEI	CTNAG	3 cut(s)	12, 219, 333
BstEII	GGTNACC	1 cut(s)	475
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	2 cut(s)	239, 523
BstHHI	GCGC	2 cut(s)	238, 522
BstKTI	GATC	7 cut(s)	126, 154, 258, 277, 282, 442, 490
BstMBI	GATC	7 cut(s)	123, 151, 255, 274, 279, 439, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	439
BstZ17I	GTATAC	2 cut(s)	87, 396
BsuRI	GGCC	2 cut(s)	190, 310
BtsCI	GGATG	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	192, 234
CfoI	GCGC	2 cut(s)	238, 522
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	99, 368
CviJI	RGCY	6 cut(s)	5, 190, 310, 389, 431, 499
CviKI_1	RGCY	6 cut(s)	5, 190, 310, 389, 431, 499
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	3 cut(s)	12, 219, 333
DpnI	GATC	7 cut(s)	125, 153, 257, 276, 281, 441, 489
DpnII	GATC	7 cut(s)	123, 151, 255, 274, 279, 439, 487
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	190
Eco47III	AGCGCT	2 cut(s)	237, 521
Eco91I	GGTNACC	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	102, 371
FaiI	YATR	9 cut(s)	87, 100, 138, 173, 260, 288, 369, 396, 471
FalI	AAGNNNNNCTT	3 cut(s)	506, 538, 509
FatI	CATG	2 cut(s)	98, 367
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	3 cut(s)	86, 213, 395
FokI	GGATG	1 cut(s)	50
FspBI	CTAG	2 cut(s)	129, 500
GlaI	GCGC	2 cut(s)	237, 521
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	2 cut(s)	239, 523
HaeIII	GGCC	2 cut(s)	190, 310
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	2 cut(s)	238, 522
Hin1II	CATG	2 cut(s)	102, 371
Hin6I	GCGC	2 cut(s)	236, 520
HinP1I	GCGC	2 cut(s)	236, 520
HinfI	GANTC	2 cut(s)	268, 507
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	362, 373
Hpy166II	GTNNAC	4 cut(s)	87, 146, 214, 396
Hpy188I	TCNGA	2 cut(s)	156, 279
Hpy188III	TCNNGA	2 cut(s)	14, 272
Hpy8I	GTNNAC	4 cut(s)	87, 146, 214, 396
HpyAV	CCTTC	3 cut(s)	299, 321, 388
HpyCH4III	ACNGT	2 cut(s)	421, 537
HpyCH4V	TGCA	2 cut(s)	110, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	3 cut(s)	12, 219, 333
Hsp92II	CATG	2 cut(s)	102, 371
HspAI	GCGC	2 cut(s)	236, 520
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	7 cut(s)	123, 151, 255, 274, 279, 439, 487
LmnI	GCTCC	3 cut(s)	241, 496, 529
LpnPI	CCDG	8 cut(s)	172, 204, 224, 231, 246, 345, 397, 417
LweI	GCATC	2 cut(s)	28, 454
MaeI	CTAG	2 cut(s)	129, 500
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	7 cut(s)	125, 153, 257, 276, 281, 441, 489
MboI	GATC	7 cut(s)	123, 151, 255, 274, 279, 439, 487
MboII	GAAGA	1 cut(s)	14
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	91, 133, 356
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	2 cut(s)	72, 484
MnlI	CCTC	4 cut(s)	10, 69, 108, 346
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	3 cut(s)	159, 359, 423
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	407
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	7 cut(s)	123, 151, 255, 274, 279, 439, 487
NlaIII	CATG	2 cut(s)	102, 371
NlaIV	GGNNCC	4 cut(s)	168, 231, 376, 441
NspI	RCATGY	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	190
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	507
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	359
PsiI	TTATAA	2 cut(s)	138, 471
PspEI	GGTNACC	1 cut(s)	475
PspN4I	GGNNCC	4 cut(s)	168, 231, 376, 441
PspPI	GGNCC	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	3 cut(s)	159, 359, 423
Sau3AI	GATC	7 cut(s)	123, 151, 255, 274, 279, 439, 487
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	21, 83, 213, 231, 380, 433, 477, 501
SfaNI	GCATC	2 cut(s)	28, 454
Sse9I	AATT	3 cut(s)	91, 133, 356
SseBI	AGGCCT	1 cut(s)	190
SspMI	CTAG	2 cut(s)	129, 500
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	421, 537
TasI	AATT	3 cut(s)	91, 133, 356
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	3 cut(s)	159, 359, 423
Tru9I	TTAA	3 cut(s)	159, 359, 423
TspDTI	ATGAA	1 cut(s)	462
VspI	ATTAAT	1 cut(s)	359
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	3 cut(s)	86, 213, 395
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	2 cut(s)	129, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.