Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Forward (+)

9274692 .. 9277181

Gene Structure 2490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTTCTACTCAGGAGGTTCTTCCCACACCGTTGGATGCCACCTCCAACCCACCTCCTCTCTTTGATGGCACTACAAGGCTGTATACCTATTACTCATGCCCATTTGCACAGAGGGGTTTACAAGATCAGATTAAGTTAGTTCCTTTAAATCTCGCAAACAGGCCTGCTTGGTACAAGGAAAAGGTCTACCCTGAGAATAAGGTGCCAGCACTGGAGCACAATGGGAAGATCATTGGGGAGAGTCTTGATCTTATCAAGTATGTGGATAGCAACTTTGAAGGGCCTTCACTTTTCCCCAAAGACCCTGAGAAAGCAAAATTTGGTGAAGAATTAATATCACATGTCGGTACCTTCACCGGGGCTTTGTATACTGCATTCAAAGCAGATGACACAGTAAAACAGGCTGATGCTCAGTTTGATTACCTGGAAAATGCTCTAAAAAAATTTGACGATGGGCCATTTCTTCTGGGTCAGTTCAGTTTGGCTGACATTGCATATATCCCATTTGTTGAGAGATTCCAAAGCTTCTTATCAGCGGTGTGGAAGTATGACATCACAGCAGGCAGGCCTAAACTAGCAGCATGGTTGGAGGAAATCAACAAGATTGATGCTTATAAGGTAACCAAAACTGATCCGAACGAGCTTGTCGGATTCTACAAGAAGCGATTCTTGGAGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

229

Amino Acids

25.87

Weight (kDa)

5.21

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	28 - 96	1.3e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	39 - 91	4.4e-09	Glutathione S-transferase, N-terminal domain
GST_C_5	PF16865	113 - 196	6.2e-08	Glutathione S-transferase, C-terminal domain
GST_C	PF00043	129 - 202	6.5e-07	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	133 - 198	3.4e-12	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	2 cut(s)	205, 350
AccI	GTMKAC	3 cut(s)	86, 189, 371
AciI	CCGC	1 cut(s)	539
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	2 cut(s)	320, 446
AfaI	GTAC	2 cut(s)	176, 352
AfiI	CCNNNNNNNGG	1 cut(s)	360
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	281, 382
AjnI	CCWGG	1 cut(s)	426
AjuI	GAANNNNNNNTTGG	1 cut(s)	656
AluBI	AGCT	2 cut(s)	528, 646
AluI	AGCT	2 cut(s)	528, 646
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	4 cut(s)	164, 284, 458, 569
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	2 cut(s)	320, 446
AseI	ATTAAT	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	668
Asp718I	GGTACC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	284, 458
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	338, 349
BanI	GGYRCC	2 cut(s)	205, 350
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	2 cut(s)	62, 449
BciT130I	CCWGG	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	361
BfaI	CTAG	1 cut(s)	578
BisI	GCNGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	361, 428
BmgT120I	GGNCC	2 cut(s)	284, 458
BmiI	GGNNCC	2 cut(s)	207, 352
BmrFI	CCNGG	2 cut(s)	361, 428
BmsI	GCATC	3 cut(s)	28, 400, 601
BpmI	CTGGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	4 cut(s)	26, 186, 300, 428
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	593
BshFI	GGCC	4 cut(s)	166, 286, 460, 571
BshNI	GGYRCC	2 cut(s)	205, 350
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	4 cut(s)	166, 286, 460, 571
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	4 cut(s)	127, 231, 250, 634
BspACI	CCGC	1 cut(s)	539
BspANI	GGCC	4 cut(s)	166, 286, 460, 571
BspCNI	CTCAG	4 cut(s)	25, 187, 301, 427
BspLI	GGNNCC	2 cut(s)	207, 352
BspPI	GGATC	1 cut(s)	629
BspT107I	GGYRCC	2 cut(s)	205, 350
BsrDI	GCAATG	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	4 cut(s)	127, 231, 250, 634
BssNAI	GTATAC	2 cut(s)	87, 372
Bst1107I	GTATAC	2 cut(s)	87, 372
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	33, 397, 684
BstC8I	GCNNGC	4 cut(s)	168, 210, 565, 569
BstDEI	CTNAG	4 cut(s)	12, 195, 309, 414
BstEII	GGTNACC	1 cut(s)	622
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	4 cut(s)	130, 234, 253, 637
BstMBI	GATC	4 cut(s)	127, 231, 250, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 494
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	347
BstPI	GGTNACC	1 cut(s)	622
BstSCI	CCNGG	2 cut(s)	359, 426
BstV1I	GCAGC	1 cut(s)	593
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstZ17I	GTATAC	2 cut(s)	87, 372
BsuRI	GGCC	4 cut(s)	166, 286, 460, 571
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	212
Cac8I	GCNNGC	4 cut(s)	168, 210, 565, 569
Cfr13I	GGNCC	2 cut(s)	284, 458
Csp6I	GTAC	2 cut(s)	175, 351
CviAII	CATG	3 cut(s)	99, 344, 585
CviQI	GTAC	2 cut(s)	175, 351
DdeI	CTNAG	4 cut(s)	12, 195, 309, 414
DpnI	GATC	4 cut(s)	129, 233, 252, 636
DpnII	GATC	4 cut(s)	127, 231, 250, 634
DraI	TTTAAA	1 cut(s)	150
Eco147I	AGGCCT	2 cut(s)	166, 571
Eco91I	GGTNACC	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	102, 347, 588
FalI	AAGNNNNNCTT	1 cut(s)	656
FatI	CATG	3 cut(s)	98, 343, 584
FblI	GTMKAC	3 cut(s)	86, 189, 371
Fnu4HI	GCNGC	1 cut(s)	582
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	582
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	166, 286, 460, 571
HapII	CCGG	1 cut(s)	360
Hin1II	CATG	3 cut(s)	102, 347, 588
HindIII	AAGCTT	1 cut(s)	526
HinfI	GANTC	4 cut(s)	244, 519, 654, 669
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	2 cut(s)	338, 349
Hpy166II	GTNNAC	4 cut(s)	87, 122, 190, 372
Hpy188I	TCNGA	3 cut(s)	132, 639, 653
Hpy188III	TCNNGA	2 cut(s)	14, 248
Hpy8I	GTNNAC	4 cut(s)	87, 122, 190, 372
HpyAV	CCTTC	3 cut(s)	275, 297, 364
HpyCH4III	ACNGT	3 cut(s)	33, 397, 684
HpyCH4V	TGCA	3 cut(s)	110, 377, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 494
HpyF3I	CTNAG	4 cut(s)	12, 195, 309, 414
Hsp92II	CATG	3 cut(s)	102, 347, 588
KpnI	GGTACC	1 cut(s)	354
Kzo9I	GATC	4 cut(s)	127, 231, 250, 634
LmnI	GCTCC	2 cut(s)	217, 676
Lsp1109I	GCAGC	1 cut(s)	593
LweI	GCATC	3 cut(s)	28, 400, 601
MaeI	CTAG	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	4 cut(s)	129, 233, 252, 636
MboI	GATC	4 cut(s)	127, 231, 250, 634
MboII	GAAGA	4 cut(s)	14, 241, 341, 458
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	3 cut(s)	320, 332, 446
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	4 cut(s)	15, 72, 570, 631
MnlI	CCTC	6 cut(s)	10, 55, 66, 69, 108, 586
MroXI	GAANNNNTTC	1 cut(s)	668
MseI	TTAA	3 cut(s)	135, 149, 335
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	361, 428
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	383, 494
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	4 cut(s)	127, 231, 250, 634
NlaIII	CATG	3 cut(s)	102, 347, 588
NlaIV	GGNNCC	2 cut(s)	207, 352
NspI	RCATGY	1 cut(s)	347
PceI	AGGCCT	2 cut(s)	166, 571
PciI	ACATGT	1 cut(s)	343
PctI	GAATGC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	3 cut(s)	519, 654, 669
PkrI	GCNGC	1 cut(s)	583
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PscI	ACATGT	1 cut(s)	343
PshBI	ATTAAT	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	426
PspEI	GGTNACC	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	207, 352
PspPI	GGNCC	2 cut(s)	284, 458
RsaI	GTAC	2 cut(s)	176, 352
RsaNI	GTAC	2 cut(s)	175, 351
SaqAI	TTAA	3 cut(s)	135, 149, 335
SatI	GCNGC	1 cut(s)	582
Sau3AI	GATC	4 cut(s)	127, 231, 250, 634
Sau96I	GGNCC	2 cut(s)	284, 458
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	361, 428
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	3 cut(s)	28, 400, 601
Sse9I	AATT	3 cut(s)	320, 332, 446
SseBI	AGGCCT	2 cut(s)	166, 571
SsiI	CCGC	1 cut(s)	539
SspMI	CTAG	1 cut(s)	578
StuI	AGGCCT	2 cut(s)	166, 571
StyD4I	CCNGG	2 cut(s)	359, 426
TaaI	ACNGT	3 cut(s)	33, 397, 684
TasI	AATT	3 cut(s)	320, 332, 446
TfiI	GAWTC	3 cut(s)	519, 654, 669
Tru1I	TTAA	3 cut(s)	135, 149, 335
Tru9I	TTAA	3 cut(s)	135, 149, 335
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	581
TspRI	CASTG	1 cut(s)	219
VspI	ATTAAT	1 cut(s)	335
XapI	RAATTY	2 cut(s)	320, 446
XceI	RCATGY	1 cut(s)	347
XmiI	GTMKAC	3 cut(s)	86, 189, 371
XmnI	GAANNNNTTC	1 cut(s)	668
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.