Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Reverse (-)

15027339 .. 15028517

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTTACAAGCATGAGGAACTTCCTCCACCGTTGGATTCCACTTCCTCCCCACCTCCTCTCTTTGACGGCACTACAAGGTTGTACGTAAATTACGCATGTCCATTTGCACAGCGGGTTTGGATCACTAGGAACTATAAGGGTTTGCAAGACAAGATTAAGCTAGTCCCTATAAATCTTCAAAACAGGCCTGATTGGTACAAGGAAAAGGTCTACCCTGGAAACAAGGTGCCCGCTCTGGAGCACAATGGAAACGTCATTGGAGAAAGTCTTGATCGATCAAATACGTCGGTAGCAACTTCGAAGGGCCTTCACTTTTCCCCAAGGACGATCCTGAGAGAAAAAAGTTCGGTGAAGAATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

122

Amino Acids

13.74

Weight (kDa)

9.45

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	2 cut(s)	115, 234
AclWI	GGATC	2 cut(s)	131, 325
AfaI	GTAC	2 cut(s)	86, 200
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	131, 325
AoxI	GGCC	2 cut(s)	188, 307
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	364
AsuII	TTCGAA	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	219
BfaI	CTAG	2 cut(s)	129, 164
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	217, 323
BseBI	CCWGG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	217, 323
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	234
BshFI	GGCC	2 cut(s)	190, 309
BshNI	GGYRCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	190, 309
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	234, 246
Bsp143I	GATC	4 cut(s)	123, 274, 278, 330
BspACI	CCGC	2 cut(s)	115, 234
BspANI	GGCC	2 cut(s)	190, 309
BspCNI	CTCAG	1 cut(s)	327
BspDI	ATCGAT	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	131, 325
BspT104I	TTCGAA	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	217, 323
BssMI	GATC	4 cut(s)	123, 274, 278, 330
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	335
BstKTI	GATC	4 cut(s)	126, 277, 281, 333
BstMBI	GATC	4 cut(s)	123, 274, 278, 330
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	234
BstSNI	TACGTA	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	190, 309
BsuTUI	ATCGAT	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	85, 199
CviAII	CATG	2 cut(s)	14, 99
CviJI	RGCY	4 cut(s)	5, 163, 190, 309
CviKI_1	RGCY	4 cut(s)	5, 163, 190, 309
CviQI	GTAC	2 cut(s)	85, 199
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	4 cut(s)	125, 276, 280, 332
DpnII	GATC	4 cut(s)	123, 274, 278, 330
Eco105I	TACGTA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	2 cut(s)	17, 102
FaiI	YATR	4 cut(s)	15, 100, 138, 173
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	13, 98
FauI	CCCGC	2 cut(s)	108, 241
FblI	GTMKAC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	129, 164
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	190, 309
Hin1II	CATG	2 cut(s)	17, 102
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188III	TCNNGA	3 cut(s)	239, 272, 334
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	298, 320
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	3 cut(s)	87, 255, 287
HpyCH4V	TGCA	2 cut(s)	110, 148
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	3 cut(s)	87, 255, 287
Hsp92II	CATG	2 cut(s)	17, 102
Kzo9I	GATC	4 cut(s)	123, 274, 278, 330
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	6 cut(s)	172, 204, 204, 224, 231, 347
MaeI	CTAG	2 cut(s)	129, 164
MaeII	ACGT	3 cut(s)	87, 255, 287
MalI	GATC	4 cut(s)	125, 276, 280, 332
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	4 cut(s)	123, 274, 278, 330
MboII	GAAGA	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	234, 246
MluCI	AATT	2 cut(s)	91, 358
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	10, 36, 58, 66, 69
MseI	TTAA	2 cut(s)	159, 364
MspA1I	CMGCKG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
NdeII	GATC	4 cut(s)	123, 274, 278, 330
NlaIII	CATG	2 cut(s)	17, 102
NlaIV	GGNNCC	1 cut(s)	231
NspI	RCATGY	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	307
RsaI	GTAC	2 cut(s)	86, 200
RsaNI	GTAC	2 cut(s)	85, 199
SaqAI	TTAA	2 cut(s)	159, 364
Sau3AI	GATC	4 cut(s)	123, 274, 278, 330
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	2 cut(s)	234, 246
SetI	ASST	8 cut(s)	58, 83, 90, 165, 213, 231, 258, 290
SfuI	TTCGAA	1 cut(s)	302
SnaBI	TACGTA	1 cut(s)	88
Sse9I	AATT	2 cut(s)	91, 358
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	2 cut(s)	115, 234
SspMI	CTAG	2 cut(s)	129, 164
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	3 cut(s)	90, 258, 290
TaqI	TCGA	2 cut(s)	277, 302
TasI	AATT	2 cut(s)	91, 358
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	159, 364
Tru9I	TTAA	2 cut(s)	159, 364
XceI	RCATGY	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	129, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.