Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001810.1

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Forward (+)

36 .. 1980

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001810.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggcttatactcaggaggatcttcccacaccgttggatgccacttccaacccacctcctctctttgatggcactacaaggttgtatacctattactcttgcccatttgcacagagggtgtggatcactaggaattataagggtttacaagatcagattaagttagtccctttaaatctccaaaacaggcctgcttggtacaaggaaaaggtctaccctgagaataaggtgccagcactggagcacaatggaaagatcataggggagagtcttgatctgatcaaatatgtggatagcaactttgaagggccttcacttttccccaaagaccctgagaaagcaaagtttggtgaagaattaatatcacatgtcggtaccttcaccggggctttgtatactgcattcaaagcaaatgacacggtaaaacaagccgatgctcagtttgattacctggaaaatgctctgaaaaaatttgacgatgggccatttttcctgggtcagttcagtttggcggacatagcctatatcccatttgttgagagattccaaagcttcttatcagaggtgtggaagtatgatatcacagctggcaggcctaaactagcagcatggttggaggaaatcaacaagattgatgcttataaggtaaccaaaactgatccaaaagagctagttggattctacaagaagcgctttttggagcaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

236

Amino Acids

27.18

Weight (kDa)

5.57

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	138, 642
Acc65I	GGTACC	1 cut(s)	374
AccB1I	GGYRCC	2 cut(s)	229, 374
AccI	GTMKAC	3 cut(s)	86, 213, 395
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	3 cut(s)	27, 131, 653
AcsI	RAATTY	1 cut(s)	470
AfaI	GTAC	2 cut(s)	200, 376
AfeI	AGCGCT	1 cut(s)	692
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	305, 406
AjnI	CCWGG	2 cut(s)	450, 492
AjuI	GAANNNNNNNTTGG	1 cut(s)	680
AluBI	AGCT	3 cut(s)	552, 587, 670
AluI	AGCT	3 cut(s)	552, 587, 670
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	3 cut(s)	27, 131, 653
Aor51HI	AGCGCT	1 cut(s)	692
AoxI	GGCC	4 cut(s)	188, 308, 482, 593
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	1 cut(s)	470
AseI	ATTAAT	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	2 cut(s)	308, 482
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	362, 373
BanI	GGYRCC	2 cut(s)	229, 374
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	2 cut(s)	62, 473
BciT130I	CCWGG	2 cut(s)	452, 494
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	385
BfaI	CTAG	3 cut(s)	129, 602, 671
BfoI	RGCGCY	1 cut(s)	694
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	3 cut(s)	385, 452, 494
BmgT120I	GGNCC	2 cut(s)	308, 482
BmiI	GGNNCC	2 cut(s)	231, 376
BmrFI	CCNGG	3 cut(s)	385, 452, 494
BmsI	GCATC	3 cut(s)	28, 424, 625
BpmI	CTGGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	384, 493
BsaXI	ACNNNNNCTCC	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	452, 494
BseDI	CCNNGG	2 cut(s)	384, 493
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	26, 210, 324, 452
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	617
BshFI	GGCC	4 cut(s)	190, 310, 484, 595
BshNI	GGYRCC	2 cut(s)	229, 374
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	4 cut(s)	190, 310, 484, 595
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 658
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	4 cut(s)	190, 310, 484, 595
BspCNI	CTCAG	4 cut(s)	25, 211, 325, 451
BspLI	GGNNCC	2 cut(s)	231, 376
BspPI	GGATC	3 cut(s)	27, 131, 653
BspT107I	GGYRCC	2 cut(s)	229, 374
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	384, 493
BssMI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 658
BssNAI	GTATAC	2 cut(s)	87, 396
Bst1107I	GTATAC	2 cut(s)	87, 396
Bst2UI	CCWGG	2 cut(s)	452, 494
Bst4CI	ACNGT	3 cut(s)	33, 421, 708
BstC8I	GCNNGC	4 cut(s)	192, 234, 589, 593
BstDEI	CTNAG	4 cut(s)	12, 219, 333, 438
BstEII	GGTNACC	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	7 cut(s)	22, 126, 154, 258, 277, 282, 661
BstMBI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 518
BstNI	CCWGG	2 cut(s)	452, 494
BstNSI	RCATGY	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	3 cut(s)	383, 450, 492
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	19
BstZ17I	GTATAC	2 cut(s)	87, 396
BsuRI	GGCC	4 cut(s)	190, 310, 484, 595
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	4 cut(s)	192, 234, 589, 593
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	2 cut(s)	308, 482
Csp6I	GTAC	2 cut(s)	199, 375
CviAII	CATG	2 cut(s)	368, 609
CviQI	GTAC	2 cut(s)	199, 375
DdeI	CTNAG	4 cut(s)	12, 219, 333, 438
DpnI	GATC	7 cut(s)	21, 125, 153, 257, 276, 281, 660
DpnII	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 658
DraI	TTTAAA	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	527
Eco147I	AGGCCT	2 cut(s)	190, 595
Eco32I	GATATC	1 cut(s)	580
Eco47III	AGCGCT	1 cut(s)	692
Eco91I	GGTNACC	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	450, 492
EcoRV	GATATC	1 cut(s)	580
FaeI	CATG	2 cut(s)	371, 612
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	367, 608
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	3 cut(s)	86, 213, 395
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	3 cut(s)	129, 602, 671
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	4 cut(s)	190, 310, 484, 595
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	693
Hin1II	CATG	2 cut(s)	371, 612
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	3 cut(s)	268, 543, 678
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	362, 373
Hpy166II	GTNNAC	4 cut(s)	87, 146, 214, 396
Hpy188I	TCNGA	4 cut(s)	156, 279, 465, 562
Hpy188III	TCNNGA	2 cut(s)	14, 272
Hpy8I	GTNNAC	4 cut(s)	87, 146, 214, 396
HpyAV	CCTTC	3 cut(s)	299, 321, 388
HpyCH4III	ACNGT	3 cut(s)	33, 421, 708
HpyCH4V	TGCA	2 cut(s)	110, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 518
HpyF3I	CTNAG	4 cut(s)	12, 219, 333, 438
Hsp92II	CATG	2 cut(s)	371, 612
HspAI	GCGC	1 cut(s)	691
KpnI	GGTACC	1 cut(s)	378
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 658
LmnI	GCTCC	2 cut(s)	241, 700
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	3 cut(s)	28, 424, 625
MaeI	CTAG	3 cut(s)	129, 602, 671
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	7 cut(s)	21, 125, 153, 257, 276, 281, 660
MboI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 658
MboII	GAAGA	2 cut(s)	14, 365
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	133, 356, 470
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	4 cut(s)	15, 72, 594, 655
MnlI	CCTC	6 cut(s)	10, 66, 69, 108, 556, 610
MseI	TTAA	3 cut(s)	159, 173, 359
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	3 cut(s)	385, 452, 494
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	2 cut(s)	452, 494
MwoI	GCNNNNNNNGC	2 cut(s)	407, 518
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 658
NlaIII	CATG	2 cut(s)	371, 612
NlaIV	GGNNCC	2 cut(s)	231, 376
NspI	RCATGY	1 cut(s)	371
PceI	AGGCCT	2 cut(s)	190, 595
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	543, 678
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	359
PsiI	TTATAA	2 cut(s)	138, 642
Psp6I	CCWGG	2 cut(s)	450, 492
PspEI	GGTNACC	1 cut(s)	646
PspGI	CCWGG	2 cut(s)	450, 492
PspN4I	GGNNCC	2 cut(s)	231, 376
PspPI	GGNCC	2 cut(s)	308, 482
PsuI	RGATCY	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	200, 376
RsaNI	GTAC	2 cut(s)	199, 375
SaqAI	TTAA	3 cut(s)	159, 173, 359
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	7 cut(s)	19, 123, 151, 255, 274, 279, 658
Sau96I	GGNCC	2 cut(s)	308, 482
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	385, 452, 494
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	3 cut(s)	28, 424, 625
Sse9I	AATT	3 cut(s)	133, 356, 470
SseBI	AGGCCT	2 cut(s)	190, 595
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	3 cut(s)	129, 602, 671
StuI	AGGCCT	2 cut(s)	190, 595
StyD4I	CCNGG	3 cut(s)	383, 450, 492
TaaI	ACNGT	3 cut(s)	33, 421, 708
TasI	AATT	3 cut(s)	133, 356, 470
TfiI	GAWTC	2 cut(s)	543, 678
Tru1I	TTAA	3 cut(s)	159, 173, 359
Tru9I	TTAA	3 cut(s)	159, 173, 359
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	1 cut(s)	605
TspRI	CASTG	1 cut(s)	243
VspI	ATTAAT	1 cut(s)	359
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	3 cut(s)	86, 213, 395
XspI	CTAG	3 cut(s)	129, 602, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.