Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Reverse (-)

20460252 .. 20463131

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1129400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTTACAGGCATGAGGACCTTCCTCCACCTTTGGATTCCACTTCCTCCCCACCTCCTCTCTTTGACGGCACTACAAGGTTGTACGTAAATTACTCATGTCCATTTGCGCAGCGGGTTTGGATCACTAGGAACTATAAGGGTTTGCAAGACAAGATTAAGCTAGTCCCTATAAATCTTCAAAACAGGCCTGATTGGTACAAGGAAAAGGTCTACCCTGGAAACAAGGTGCCAGCTCTGGAGCACAATGGAAAAGTCATTGGAGAAAGTCTTGATCTGATCAAATACATCGATAGCAACTTCGAAGGGCCTTCACTTTCCCCCAAGGACGATCCTGAGAGAAAAAAGTTTGGTGAAGAATTGTTAACTTACGTCGATACCTTCACGGGGTCCTTGTATCGCTCATTCAAAGGAGACGCGGTAAAAGCAGCTGATGAGCAGTTTGATTACTTGGAAAATGCTCTTAAGAAATTTGATGACGGGCCATATTTTCTGGGCCAGTTCAGTTTGGTGGACATAGCCTATATCCCGTTTATTGAGCGATTCCAAGTCTTCTTATCAGACGTATTCAAGTATGACATCACAGCAGGGAGGCCCAAACTAGCAGCATGGTTCGAGGAAATCAATAAGATTGAGGCATACAAGGTAACCAAAACTGATCCAAAGGAGCTTGTTGCATTCTACAAGAAACGCTTCCTGGAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

237

Amino Acids

27.4

Weight (kDa)

5.85

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	27 - 98	2.4e-08	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	28 - 104	3.9e-23	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	34 - 99	2.5e-19	Glutathione S-transferase, N-terminal domain
GST_C_5	PF16865	119 - 206	7e-10	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	140 - 206	3.3e-12	Glutathione S-transferase, C-terminal domain
GST_C	PF00043	140 - 210	6e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	419
AciI	CCGC	2 cut(s)	115, 419
AclWI	GGATC	3 cut(s)	131, 326, 653
AcsI	RAATTY	1 cut(s)	470
AfaI	GTAC	2 cut(s)	86, 200
AfiI	CCNNNNNNNGG	1 cut(s)	387
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	3 cut(s)	182, 409, 571
AjnI	CCWGG	2 cut(s)	217, 696
AluBI	AGCT	4 cut(s)	163, 236, 431, 670
AluI	AGCT	4 cut(s)	163, 236, 431, 670
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	3 cut(s)	131, 326, 653
AoxI	GGCC	5 cut(s)	188, 308, 482, 496, 593
ApeKI	GCWGC	4 cut(s)	112, 428, 605, 703
ApoI	RAATTY	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	6 cut(s)	19, 308, 390, 482, 496, 594
AsuHPI	GGTGA	1 cut(s)	365
AsuII	TTCGAA	1 cut(s)	303
AvaII	GGWCC	2 cut(s)	19, 390
BanI	GGYRCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	124, 440, 617
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	219, 698
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	3 cut(s)	129, 164, 602
BfrI	CTTAAG	1 cut(s)	464
BisI	GCNGC	4 cut(s)	113, 429, 606, 704
BlsI	GCNGC	4 cut(s)	114, 430, 607, 705
Bme1390I	CCNGG	2 cut(s)	219, 698
Bme18I	GGWCC	2 cut(s)	19, 390
BmgT120I	GGNCC	6 cut(s)	19, 308, 390, 482, 496, 594
BmiI	GGNNCC	2 cut(s)	231, 391
BmrFI	CCNGG	2 cut(s)	219, 698
BpiI	GAAGAC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	217, 324
BsaXI	ACNNNNNCTCC	3 cut(s)	405, 435, 692
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	219, 698
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	217, 324
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	124, 440, 617
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	5 cut(s)	190, 310, 484, 498, 595
BshNI	GGYRCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	1 cut(s)	408
BsmBI	CGTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	5 cut(s)	190, 310, 484, 498, 595
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	123, 274, 279, 331, 658
BspACI	CCGC	2 cut(s)	115, 419
BspANI	GGCC	5 cut(s)	190, 310, 484, 498, 595
BspCNI	CTCAG	1 cut(s)	328
BspDI	ATCGAT	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	231, 391
BspPI	GGATC	3 cut(s)	131, 326, 653
BspT104I	TTCGAA	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	217, 324
BssMI	GATC	5 cut(s)	123, 274, 279, 331, 658
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	219, 698
BstAFI	CTTAAG	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	5 cut(s)	126, 277, 282, 334, 661
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	5 cut(s)	123, 274, 279, 331, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	2 cut(s)	219, 698
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	217, 696
BstSNI	TACGTA	1 cut(s)	88
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	124, 440, 617
BstV2I	GAAGAC	1 cut(s)	544
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	5 cut(s)	190, 310, 484, 498, 595
BsuTUI	ATCGAT	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	6 cut(s)	19, 308, 390, 482, 496, 594
ClaI	ATCGAT	1 cut(s)	291
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	85, 199
CviAII	CATG	3 cut(s)	14, 99, 609
CviQI	GTAC	2 cut(s)	85, 199
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	5 cut(s)	125, 276, 281, 333, 660
DpnII	GATC	5 cut(s)	123, 274, 279, 331, 658
Eco105I	TACGTA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	324
Eco147I	AGGCCT	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	19, 390
Eco91I	GGTNACC	1 cut(s)	646
EcoO109I	RGGNCCY	3 cut(s)	19, 308, 390
EcoO65I	GGTNACC	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	217, 696
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	3 cut(s)	17, 102, 612
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	3 cut(s)	13, 98, 608
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	113, 429, 606, 704
Fsp4HI	GCNGC	4 cut(s)	113, 429, 606, 704
FspBI	CTAG	3 cut(s)	129, 164, 602
FspI	TGCGCA	1 cut(s)	111
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	4 cut(s)	113, 429, 606, 704
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	5 cut(s)	190, 310, 484, 498, 595
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	17, 102, 612
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	2 cut(s)	38, 543
HpaI	GTTAAC	1 cut(s)	366
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	214, 366, 514
Hpy188I	TCNGA	2 cut(s)	279, 562
Hpy188III	TCNNGA	3 cut(s)	239, 272, 335
Hpy8I	GTNNAC	3 cut(s)	214, 366, 514
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	4 cut(s)	32, 299, 321, 391
HpyCH4IV	ACGT	3 cut(s)	87, 372, 564
HpyCH4V	TGCA	2 cut(s)	148, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	3 cut(s)	87, 372, 564
Hsp92II	CATG	3 cut(s)	17, 102, 612
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	279
KspAI	GTTAAC	1 cut(s)	366
Kzo9I	GATC	5 cut(s)	123, 274, 279, 331, 658
LmnI	GCTCC	3 cut(s)	241, 667, 700
Lsp1109I	GCAGC	3 cut(s)	124, 440, 617
MaeI	CTAG	3 cut(s)	129, 164, 602
MaeII	ACGT	3 cut(s)	87, 372, 564
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	5 cut(s)	125, 276, 281, 333, 660
MboI	GATC	5 cut(s)	123, 274, 279, 331, 658
MboII	GAAGA	3 cut(s)	170, 368, 544
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	91, 359, 470
MnlI	CCTC	8 cut(s)	10, 36, 58, 66, 69, 585, 610, 628
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	3 cut(s)	159, 365, 465
MspA1I	CMGCKG	2 cut(s)	115, 431
MspCI	CTTAAG	1 cut(s)	464
MspR9I	CCNGG	2 cut(s)	219, 698
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	2 cut(s)	219, 698
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	5 cut(s)	123, 274, 279, 331, 658
NlaIII	CATG	3 cut(s)	17, 102, 612
NlaIV	GGNNCC	2 cut(s)	231, 391
NsbI	TGCGCA	1 cut(s)	111
NspV	TTCGAA	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	190
PctI	GAATGC	1 cut(s)	677
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	38, 543
PfoI	TCCNGGA	1 cut(s)	696
PkrI	GCNGC	4 cut(s)	114, 430, 607, 705
Ppu21I	YACGTR	1 cut(s)	88
PpuMI	RGGWCCY	2 cut(s)	19, 390
Psp5II	RGGWCCY	2 cut(s)	19, 390
Psp6I	CCWGG	2 cut(s)	217, 696
PspEI	GGTNACC	1 cut(s)	646
PspGI	CCWGG	2 cut(s)	217, 696
PspN4I	GGNNCC	2 cut(s)	231, 391
PspPI	GGNCC	6 cut(s)	19, 308, 390, 482, 496, 594
PspPPI	RGGWCCY	2 cut(s)	19, 390
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	86, 200
RsaNI	GTAC	2 cut(s)	85, 199
SaqAI	TTAA	3 cut(s)	159, 365, 465
SatI	GCNGC	4 cut(s)	113, 429, 606, 704
Sau3AI	GATC	5 cut(s)	123, 274, 279, 331, 658
Sau96I	GGNCC	6 cut(s)	19, 308, 390, 482, 496, 594
ScrFI	CCNGG	2 cut(s)	219, 698
SduI	GDGCHC	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	303
SinI	GGWCC	2 cut(s)	19, 390
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SnaBI	TACGTA	1 cut(s)	88
Sse9I	AATT	3 cut(s)	91, 359, 470
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	2 cut(s)	115, 419
SspMI	CTAG	3 cut(s)	129, 164, 602
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	217, 696
StyI	CCWWGG	1 cut(s)	324
TaiI	ACGT	3 cut(s)	90, 375, 567
TaqI	TCGA	4 cut(s)	291, 303, 375, 615
TasI	AATT	3 cut(s)	91, 359, 470
TfiI	GAWTC	2 cut(s)	38, 543
Tru1I	TTAA	3 cut(s)	159, 365, 465
Tru9I	TTAA	3 cut(s)	159, 365, 465
TseI	GCWGC	4 cut(s)	112, 428, 605, 703
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	19, 390
XapI	RAATTY	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	3 cut(s)	129, 164, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.