Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003572

Physical Location & Seq

Genomic Coordinates Reverse (-)

35905886 .. 35924658

Gene Structure 18773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTTACACTCGGGAGGTTCTTCCCACACCCTTGGATGCCACTTCCAACCCACCCCCTCTCTTTGATGGCACTACAAGGTTGTATACCTATTACTCTTGCCCATTTGCACAGAGGGTGTGGATCACTAGGAATTATAAGGTGCCAGCACTGGAGCACAATGGAAAGATCATAGGGGAGAGTCTTGATCTGATCAAATATGTGGATAGCAACTTTGAAGGGCCTTCACTTTTCCCCAAAGACCCTGAGAAAGCAAAGTTTGGTGAAGAATTAATATCACATGTCGGTACCTTCACCGGGGCTCTGTATACTGCATTCAAAGCAAATGACACGGTAAAACAAGCTGATGCTCAGTTTGATTACCTGGAAAATGCTCTGAAAAAATTTGACGATGGGCCATTTTTCCTGGGTCAGTTCAGTTTGTATGATATCGCAGCTGGCAGGCCTAAACTAGCAGCATGGTTGGAGGAAATCAACAAGATTGATGCTTATAAGGTAACCAAAACTGATCCAAAAGAGCTAGTTGGATTCTACAAGAAGCGCTTCTTGGAGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

187

Amino Acids

21.17

Weight (kDa)

5.76

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	44 - 75	1.2e-07	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02780 AT5G02780 AT5G02780 AT5G02790
fragaria_vesca	FvH4_6g14970 FvH4_6g14970
malus_domestica	MD04G1111400.v1.1 MD04G1111600.v1.1 MD04G1111700.v1.1 MD04G1112000.v1.1 MD04G1112100.v1.1 MD12G1129400.v1.1
prunus_persica	Prupe.6G244700_v2.0.a1
pyrus_communis	pycom04g10330 pycom04g10340 pycom12g12570
rosa_chinensis	RchiOBHm_Chr3g0468151 RchiOBHm_Chr3g0468161
rosa_laevigata	RLG00000024444
rosa_multiflora	Rmu_sc0001810.1_g000001 Rmu_sc0003659.1_g000008 Rmu_sc0005590.1_g000002 Rmu_sc0021707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412980
rosa_rugosa	Rorug03G0093700 Rorug03G0093700
rosa_samantha	Rh3AG141600 Rh3AG141700 Rh3BG163100 Rh3CG163000 Rh3CG163200 Rh3DG163600 Rh3DG163800
rosa_wichuraiana	Rw3G013380 Rw3G013390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	138, 492
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	2 cut(s)	142, 287
AccI	GTMKAC	2 cut(s)	86, 308
AclWI	GGATC	2 cut(s)	131, 503
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	1 cut(s)	289
AfeI	AGCGCT	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	218, 319
AjnI	CCWGG	2 cut(s)	363, 405
AjuI	GAANNNNNNNTTGG	1 cut(s)	530
AluBI	AGCT	3 cut(s)	344, 437, 520
AluI	AGCT	3 cut(s)	344, 437, 520
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	131, 503
Ama87I	CYCGRG	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	542
AoxI	GGCC	3 cut(s)	221, 395, 443
ApeKI	GCWGC	2 cut(s)	434, 455
ApoI	RAATTY	1 cut(s)	383
AseI	ATTAAT	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	542
Asp718I	GGTACC	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	543
AspS9I	GGNCC	2 cut(s)	221, 395
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	275, 286
AvaI	CYCGRG	1 cut(s)	12
BanI	GGYRCC	2 cut(s)	142, 287
BanII	GRGCYC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	446, 467
BccI	CCATC	2 cut(s)	62, 386
BciT130I	CCWGG	2 cut(s)	365, 407
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	298
BfaI	CTAG	3 cut(s)	129, 452, 521
BfoI	RGCGCY	1 cut(s)	544
BisI	GCNGC	2 cut(s)	435, 456
BlsI	GCNGC	2 cut(s)	436, 457
Bme1390I	CCNGG	3 cut(s)	298, 365, 407
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	221, 395
BmiI	GGNNCC	2 cut(s)	144, 289
BmrFI	CCNGG	3 cut(s)	298, 365, 407
BmsI	GCATC	3 cut(s)	28, 337, 475
BpmI	CTGGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	33, 297, 406
BsaXI	ACNNNNNCTCC	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	365, 407
BseDI	CCNNGG	3 cut(s)	33, 297, 406
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	237, 365
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	446, 467
BshFI	GGCC	3 cut(s)	223, 397, 445
BshNI	GGYRCC	2 cut(s)	142, 287
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	3 cut(s)	223, 397, 445
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	159, 304
Bsp143I	GATC	5 cut(s)	123, 168, 187, 192, 508
BspANI	GGCC	3 cut(s)	223, 397, 445
BspCNI	CTCAG	2 cut(s)	238, 364
BspLI	GGNNCC	2 cut(s)	144, 289
BspPI	GGATC	2 cut(s)	131, 503
BspT107I	GGYRCC	2 cut(s)	142, 287
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	3 cut(s)	33, 297, 406
BssMI	GATC	5 cut(s)	123, 168, 187, 192, 508
BssNAI	GTATAC	2 cut(s)	87, 309
BssT1I	CCWWGG	1 cut(s)	33
Bst1107I	GTATAC	2 cut(s)	87, 309
Bst2UI	CCWGG	2 cut(s)	365, 407
Bst4CI	ACNGT	2 cut(s)	334, 558
BstC8I	GCNNGC	3 cut(s)	147, 439, 443
BstDEI	CTNAG	2 cut(s)	246, 351
BstEII	GGTNACC	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	543
BstKTI	GATC	5 cut(s)	126, 171, 190, 195, 511
BstMBI	GATC	5 cut(s)	123, 168, 187, 192, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	2 cut(s)	365, 407
BstNSI	RCATGY	1 cut(s)	284
BstPI	GGTNACC	1 cut(s)	496
BstSCI	CCNGG	3 cut(s)	296, 363, 405
BstV1I	GCAGC	2 cut(s)	446, 467
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstZ17I	GTATAC	2 cut(s)	87, 309
BsuRI	GGCC	3 cut(s)	223, 397, 445
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	3 cut(s)	147, 439, 443
CfoI	GCGC	1 cut(s)	543
Cfr13I	GGNCC	2 cut(s)	221, 395
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	2 cut(s)	281, 459
CviJI	RGCY	8 cut(s)	5, 223, 302, 344, 397, 437, 445, 520
CviKI_1	RGCY	8 cut(s)	5, 223, 302, 344, 397, 437, 445, 520
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	246, 351
DpnI	GATC	5 cut(s)	125, 170, 189, 194, 510
DpnII	GATC	5 cut(s)	123, 168, 187, 192, 508
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	430
Eco47III	AGCGCT	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	363, 405
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	284, 462
FaiI	YATR	9 cut(s)	87, 138, 173, 201, 282, 309, 426, 460, 492
FalI	AAGNNNNNCTT	3 cut(s)	527, 559, 530
FatI	CATG	2 cut(s)	280, 458
FbaI	TGATCA	1 cut(s)	192
FblI	GTMKAC	2 cut(s)	86, 308
Fnu4HI	GCNGC	2 cut(s)	435, 456
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	2 cut(s)	435, 456
FspBI	CTAG	3 cut(s)	129, 452, 521
GlaI	GCGC	1 cut(s)	542
GluI	GCNGC	2 cut(s)	435, 456
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	544
HaeIII	GGCC	3 cut(s)	223, 397, 445
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	1 cut(s)	543
Hin1II	CATG	2 cut(s)	284, 462
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HinfI	GANTC	2 cut(s)	181, 528
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	275, 286
Hpy166II	GTNNAC	2 cut(s)	87, 309
Hpy188I	TCNGA	2 cut(s)	192, 378
Hpy188III	TCNNGA	2 cut(s)	14, 185
Hpy8I	GTNNAC	2 cut(s)	87, 309
HpyAV	CCTTC	3 cut(s)	212, 234, 301
HpyCH4III	ACNGT	2 cut(s)	334, 558
HpyCH4V	TGCA	2 cut(s)	110, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	246, 351
Hsp92II	CATG	2 cut(s)	284, 462
HspAI	GCGC	1 cut(s)	541
KpnI	GGTACC	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	5 cut(s)	123, 168, 187, 192, 508
LmnI	GCTCC	2 cut(s)	154, 550
Lsp1109I	GCAGC	2 cut(s)	446, 467
LweI	GCATC	3 cut(s)	28, 337, 475
MaeI	CTAG	3 cut(s)	129, 452, 521
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	5 cut(s)	125, 170, 189, 194, 510
MboI	GATC	5 cut(s)	123, 168, 187, 192, 508
MboII	GAAGA	2 cut(s)	14, 278
MhlI	GDGCHC	2 cut(s)	159, 304
MluCI	AATT	3 cut(s)	133, 269, 383
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	3 cut(s)	72, 444, 505
MnlI	CCTC	4 cut(s)	10, 69, 108, 460
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	3 cut(s)	298, 365, 407
Mva1269I	GAATGC	1 cut(s)	314
MvaI	CCWGG	2 cut(s)	365, 407
MwoI	GCNNNNNNNGC	1 cut(s)	320
NciI	CCSGG	1 cut(s)	298
NdeII	GATC	5 cut(s)	123, 168, 187, 192, 508
NlaIII	CATG	2 cut(s)	284, 462
NlaIV	GGNNCC	2 cut(s)	144, 289
NspI	RCATGY	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	445
PciI	ACATGT	1 cut(s)	280
PctI	GAATGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	528
PkrI	GCNGC	2 cut(s)	436, 457
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PscI	ACATGT	1 cut(s)	280
PshBI	ATTAAT	1 cut(s)	272
PsiI	TTATAA	2 cut(s)	138, 492
Psp6I	CCWGG	2 cut(s)	363, 405
PspEI	GGTNACC	1 cut(s)	496
PspGI	CCWGG	2 cut(s)	363, 405
PspN4I	GGNNCC	2 cut(s)	144, 289
PspPI	GGNCC	2 cut(s)	221, 395
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	2 cut(s)	435, 456
Sau3AI	GATC	5 cut(s)	123, 168, 187, 192, 508
Sau96I	GGNCC	2 cut(s)	221, 395
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	3 cut(s)	298, 365, 407
SduI	GDGCHC	2 cut(s)	159, 304
SfaNI	GCATC	3 cut(s)	28, 337, 475
Sse9I	AATT	3 cut(s)	133, 269, 383
SseBI	AGGCCT	1 cut(s)	445
SspMI	CTAG	3 cut(s)	129, 452, 521
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	3 cut(s)	296, 363, 405
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	334, 558
TasI	AATT	3 cut(s)	133, 269, 383
TfiI	GAWTC	1 cut(s)	528
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	2 cut(s)	434, 455
TspRI	CASTG	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	272
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	284
XmiI	GTMKAC	2 cut(s)	86, 308
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	3 cut(s)	129, 452, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.