Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1777547 .. 1779867

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGGATGATCGTGTTTTCTCTTCGGTTCACTCAACAGTTTTCAAAGAATCCGAATCATTGGAAGGAAAGTGTGATAAAATCGAAGGATACGATTTCAATCAAGGAGTAGATTACCCAAAGCTTATGCGATCCATGCTCACCACCGGATTTCAAGCCTCGAATCTCGGCGAAGCTATTGATGTCGTCAATCAAATGCTAGATTGGAGACTGGCTGATGAAACTACAGTAGCTGAAGACTGTAGTGAAGAGGAGAAGAATCCATCGTTTAGAGAGTCTGTCAAGTGTAAAATCTTTCTAGGTTTCACTTCAAATCTTGTTTCATCTGGTGTTAGAGATACTATTCGTTATCTTGTTCAGCATCATATGGTTGATGTTATAGTCACGACAACTGGTGGTGTTGAGGAAGATCTCATAAAATGCCTTGCACCTACATTTAAAGGTGATTTCTCTCTACCTGGAGCTTATTTAAGGTCAAAGGGATTGAACCGAATTGGGAATTTGCTGGTTCCTAATGATAACTACTGCAAGTTTGAGGATTGGATCATTCCCATCTTTGACGAGATGTTGAAGGAACAGAAAGAAGAGAATGTGTTGTGGACTCCTTCTAAACTGTTAGCACGGCTGGGAAAAGAAATCAACAATGAGAGTTCATACCTTTATTGGGCATACAAGATGAATATTCCAGTATTCTGCCCAGGGTTAACAGATGGCTCTCTTGGGGATATGCTGTATTTTCACTCTTTTCGTACCTCTGGCCTCATCATCGATGTAGTACAAGATATCAGAGCTATGAACGGCGAAGCTGTCCATGCAAATCCTAAAAAGACAGGGATGATAATCCTTGGAGGGGGCTTGCCAAAGCACCACATATGTAATGCCAATATGATGCGCAATGGTGCAGATTACGCTGTATTTATAAACACCGGGCAAGAATTTGATGGGAGCGACTCGGGTGCACGCCCTGATGAAGCCGTGTCTTGGGGTAAAATTAGGGGTTCTGCTAAAACCGTTAAGGTATACTGTGATGCTACCATAGCCTTCCCATTGTTGGTTGCAGAAACATTTGCCACAAAGAGAGACCAAACCTGTGAGTCTAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

368

Amino Acids

41.06

Weight (kDa)

5.11

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	3 - 167	1.5e-71	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	920
Acc16I	TGCGCA	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	1020
AclWI	GGATC	2 cut(s)	126, 551
AcsI	RAATTY	2 cut(s)	499, 935
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	751, 777
AfiI	CCNNNNNNNGG	4 cut(s)	664, 850, 981, 1051
AgsI	TTSAA	6 cut(s)	46, 100, 155, 312, 487, 571
AjnI	CCWGG	2 cut(s)	457, 697
AluBI	AGCT	6 cut(s)	124, 176, 233, 464, 791, 806
AluI	AGCT	6 cut(s)	124, 176, 233, 464, 791, 806
Alw21I	GWGCWC	1 cut(s)	961
Alw26I	GTCTC	2 cut(s)	202, 1074
Alw44I	GTGCAC	1 cut(s)	957
AlwI	GGATC	2 cut(s)	126, 551
AlwNI	CAGNNNCTG	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	952
AoxI	GGCC	1 cut(s)	757
ApaLI	GTGCAC	1 cut(s)	957
ApoI	RAATTY	2 cut(s)	499, 935
AspLEI	GCGC	1 cut(s)	894
AsuC2I	CCSGG	1 cut(s)	928
AsuHPI	GGTGA	2 cut(s)	133, 455
AvaI	CYCGRG	1 cut(s)	952
BaeGI	GKGCMC	1 cut(s)	961
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	961
BccI	CCATC	4 cut(s)	271, 560, 704, 935
BceAI	ACGGC	3 cut(s)	638, 814, 959
BcgI	CGANNNNNNTGC	2 cut(s)	938, 972
BciT130I	CCWGG	2 cut(s)	459, 699
BciVI	GTATCC	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	928
BcoDI	GTCTC	2 cut(s)	202, 1074
BfaI	CTAG	2 cut(s)	200, 299
BfmI	CTRYAG	2 cut(s)	225, 241
BfuI	GTATCC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	409
Bme1390I	CCNGG	3 cut(s)	459, 699, 928
BmeT110I	CYCGRG	1 cut(s)	952
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	3 cut(s)	459, 699, 928
BmsI	GCATC	3 cut(s)	370, 879, 1018
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	928
Bsa29I	ATCGAT	1 cut(s)	768
BsaBI	GATNNNNATC	2 cut(s)	99, 839
BsaI	GGTCTC	1 cut(s)	1074
BsaJI	CCNNGG	3 cut(s)	697, 698, 844
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	664, 850, 981, 1051
Bse1I	ACTGG	3 cut(s)	216, 397, 686
Bse3DI	GCAATG	1 cut(s)	901
Bse8I	GATNNNNATC	2 cut(s)	99, 839
BseBI	CCWGG	2 cut(s)	459, 699
BseCI	ATCGAT	1 cut(s)	768
BseDI	CCNNGG	3 cut(s)	697, 698, 844
BseGI	GGATG	2 cut(s)	13, 840
BseJI	GATNNNNATC	2 cut(s)	99, 839
BseLI	CCNNNNNNNGG	4 cut(s)	664, 850, 981, 1051
BseMI	GCAATG	1 cut(s)	901
BseNI	ACTGG	3 cut(s)	216, 397, 686
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	961
BseYI	CCCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	1 cut(s)	759
BshVI	ATCGAT	1 cut(s)	768
BsiHKAI	GWGCWC	1 cut(s)	961
BsiHKCI	CYCGRG	1 cut(s)	952
BsiSI	CCGG	2 cut(s)	147, 927
BslI	CCNNNNNNNGG	4 cut(s)	664, 850, 981, 1051
BsmAI	GTCTC	2 cut(s)	202, 1074
BsnI	GGCC	1 cut(s)	759
Bso31I	GGTCTC	1 cut(s)	1074
BsoBI	CYCGRG	1 cut(s)	952
Bsp1286I	GDGCHC	1 cut(s)	961
Bsp143I	GATC	4 cut(s)	10, 131, 409, 543
BspANI	GGCC	1 cut(s)	759
BspDI	ATCGAT	1 cut(s)	768
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	126, 551
BspTNI	GGTCTC	1 cut(s)	1074
BsrDI	GCAATG	1 cut(s)	901
BsrI	ACTGG	3 cut(s)	216, 397, 686
BssECI	CCNNGG	3 cut(s)	697, 698, 844
BssMI	GATC	4 cut(s)	10, 131, 409, 543
BssNAI	GTATAC	1 cut(s)	1021
BssT1I	CCWWGG	1 cut(s)	844
Bst1107I	GTATAC	1 cut(s)	1021
Bst2UI	CCWGG	2 cut(s)	459, 699
Bst4CI	ACNGT	6 cut(s)	40, 229, 242, 615, 1012, 1025
Bst6I	CTCTTC	3 cut(s)	28, 243, 579
BstC8I	GCNNGC	2 cut(s)	857, 961
BstDEI	CTNAG	1 cut(s)	1098
BstF5I	GGATG	2 cut(s)	13, 840
BstHHI	GCGC	1 cut(s)	894
BstKTI	GATC	4 cut(s)	13, 134, 412, 546
BstMAI	GTCTC	2 cut(s)	202, 1074
BstMBI	GATC	4 cut(s)	10, 131, 409, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	136, 812, 908, 1037
BstNI	CCWGG	2 cut(s)	459, 699
BstSCI	CCNGG	3 cut(s)	457, 697, 926
BstSFI	CTRYAG	2 cut(s)	225, 241
BstSLI	GKGCMC	1 cut(s)	961
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BstZ17I	GTATAC	1 cut(s)	1021
Bsu15I	ATCGAT	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	759
BsuTUI	ATCGAT	1 cut(s)	768
BtsCI	GGATG	2 cut(s)	13, 840
Cac8I	GCNNGC	2 cut(s)	857, 961
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	894
ClaI	ATCGAT	1 cut(s)	768
Csp6I	GTAC	2 cut(s)	750, 776
CviAII	CATG	2 cut(s)	136, 812
CviQI	GTAC	2 cut(s)	750, 776
DdeI	CTNAG	1 cut(s)	1098
DpnI	GATC	4 cut(s)	12, 133, 411, 545
DpnII	GATC	4 cut(s)	10, 131, 409, 543
DraI	TTTAAA	1 cut(s)	439
Eam1104I	CTCTTC	3 cut(s)	28, 243, 579
EarI	CTCTTC	3 cut(s)	28, 243, 579
Eco130I	CCWWGG	1 cut(s)	844
Eco31I	GGTCTC	1 cut(s)	1074
Eco32I	GATATC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	952
EcoRII	CCWGG	2 cut(s)	457, 697
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	844
FaeI	CATG	2 cut(s)	139, 815
FatI	CATG	2 cut(s)	135, 811
FauNDI	CATATG	2 cut(s)	366, 872
FblI	GTMKAC	1 cut(s)	1020
FokI	GGATG	2 cut(s)	20, 847
FspBI	CTAG	2 cut(s)	200, 299
FspI	TGCGCA	1 cut(s)	893
GlaI	GCGC	1 cut(s)	893
GsaI	CCCAGC	1 cut(s)	629
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	759
HapII	CCGG	2 cut(s)	147, 927
HhaI	GCGC	1 cut(s)	894
Hin1II	CATG	2 cut(s)	139, 815
Hin6I	GCGC	1 cut(s)	892
HinP1I	GCGC	1 cut(s)	892
HincII	GTYRAC	1 cut(s)	705
HindII	GTYRAC	1 cut(s)	705
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	8 cut(s)	50, 56, 163, 259, 275, 601, 950, 1094
HpaI	GTTAAC	1 cut(s)	705
HpaII	CCGG	2 cut(s)	147, 927
HphI	GGTGA	2 cut(s)	133, 455
Hpy166II	GTNNAC	5 cut(s)	31, 600, 705, 959, 1021
Hpy188I	TCNGA	2 cut(s)	55, 788
Hpy188III	TCNNGA	1 cut(s)	385
Hpy8I	GTNNAC	5 cut(s)	31, 600, 705, 959, 1021
HpyAV	CCTTC	5 cut(s)	59, 80, 565, 615, 1051
HpyCH4III	ACNGT	6 cut(s)	40, 229, 242, 615, 1012, 1025
HpyCH4V	TGCA	6 cut(s)	428, 528, 815, 902, 959, 1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	136, 812, 908, 1037
HpyF3I	CTNAG	1 cut(s)	1098
Hsp92II	CATG	2 cut(s)	139, 815
HspAI	GCGC	1 cut(s)	892
KspAI	GTTAAC	1 cut(s)	705
Kzo9I	GATC	4 cut(s)	10, 131, 409, 543
LmnI	GCTCC	2 cut(s)	461, 945
LweI	GCATC	3 cut(s)	370, 879, 1018
MaeI	CTAG	2 cut(s)	200, 299
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	4 cut(s)	12, 133, 411, 545
MboI	GATC	4 cut(s)	10, 131, 409, 543
MboII	GAAGA	6 cut(s)	15, 248, 260, 268, 419, 596
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	961
MluCI	AATT	4 cut(s)	492, 499, 935, 990
MlyI	GAGTC	4 cut(s)	284, 595, 944, 1103
MnlI	CCTC	7 cut(s)	169, 244, 397, 529, 763, 770, 842
MseI	TTAA	5 cut(s)	438, 470, 704, 1014, 1105
MspI	CCGG	2 cut(s)	147, 927
MspR9I	CCNGG	3 cut(s)	459, 699, 928
MvaI	CCWGG	2 cut(s)	459, 699
MwoI	GCNNNNNNNGC	4 cut(s)	136, 812, 908, 1037
NciI	CCSGG	1 cut(s)	928
NdeI	CATATG	2 cut(s)	366, 872
NdeII	GATC	4 cut(s)	10, 131, 409, 543
NlaIII	CATG	2 cut(s)	139, 815
NlaIV	GGNNCC	1 cut(s)	510
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	382
NsbI	TGCGCA	1 cut(s)	893
PasI	CCCWGGG	1 cut(s)	698
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	4 cut(s)	50, 56, 163, 259
PleI	GAGTC	4 cut(s)	283, 595, 944, 1102
PpsI	GAGTC	4 cut(s)	283, 595, 944, 1102
PsiI	TTATAA	1 cut(s)	920
Psp6I	CCWGG	2 cut(s)	457, 697
PspFI	CCCAGC	1 cut(s)	625
PspGI	CCWGG	2 cut(s)	457, 697
PspN4I	GGNNCC	1 cut(s)	510
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	2 cut(s)	751, 777
RsaNI	GTAC	2 cut(s)	750, 776
SaqAI	TTAA	5 cut(s)	438, 470, 704, 1014, 1105
Sau3AI	GATC	4 cut(s)	10, 131, 409, 543
SchI	GAGTC	4 cut(s)	284, 595, 944, 1103
ScrFI	CCNGG	3 cut(s)	459, 699, 928
SduI	GDGCHC	1 cut(s)	961
SfaNI	GCATC	3 cut(s)	370, 879, 1018
SfcI	CTRYAG	2 cut(s)	225, 241
Sse9I	AATT	4 cut(s)	492, 499, 935, 990
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	2 cut(s)	200, 299
StyD4I	CCNGG	3 cut(s)	457, 697, 926
StyI	CCWWGG	1 cut(s)	844
TaaI	ACNGT	6 cut(s)	40, 229, 242, 615, 1012, 1025
TaqI	TCGA	3 cut(s)	84, 161, 768
TasI	AATT	4 cut(s)	492, 499, 935, 990
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	4 cut(s)	50, 56, 163, 259
Tru1I	TTAA	5 cut(s)	438, 470, 704, 1014, 1105
Tru9I	TTAA	5 cut(s)	438, 470, 704, 1014, 1105
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	6 cut(s)	234, 312, 642, 692, 809, 984
VneI	GTGCAC	1 cut(s)	957
XapI	RAATTY	2 cut(s)	499, 935
XmiI	GTMKAC	1 cut(s)	1020
XspI	CTAG	2 cut(s)	200, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.