Rh3BG296900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002811
Physical Location & Seq
Forward (+)
29796161 .. 29799420
3260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG296900.1

Sequence Viewer

Length: 318 bp
ATGGGAAAACTGCGATTAAAAAACAGTAAGAAGAGATCTCAAGTACATAAAGAAGCATATTCTAGTCTAGTTGTGTCTTCAACTGGTACCTCTCCCTCAATCCCTGAGAAAGCTGAAGAAGATGTCACTCAAGCAGGAGCAAGAGCTCCATCTTCGTCTGACAAGCAATTACACCACACTGCCATCAAACCCTTCTCTTCCATCAAACACTGCTCTTGCATCTCGCTGACTGCCTCCTCTCATTCGTGTTCGAAGCCTCAATCCAATCCCCAGATTTTCGTACCAGGCTCTGAAAATCGAAAGCTCTGCAGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.4

Weight (kDa)

9.74

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 3 cut(s) 45, 88, 282
AgsI TTSAA 1 cut(s) 81
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 3 cut(s) 113, 146, 304
AluI AGCT 3 cut(s) 113, 146, 304
Alw21I GWGCWC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 290
Asp718I GGTACC 1 cut(s) 86
AsuII TTCGAA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 3 cut(s) 157, 191, 209
BcgI CGANNNNNNTGC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 285
BfaI CTAG 2 cut(s) 63, 68
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 300
BglII AGATCT 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 251
BpuEI CTTGAG 2 cut(s) 24, 114
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 300
BspT104I TTCGAA 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 88
BssMI GATC 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 2 cut(s) 26, 202
BstBI TTCGAA 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 105
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 307
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BtsI GCAGTG 2 cut(s) 177, 208
BtsIMutI CAGTG 2 cut(s) 177, 208
BveI ACCTGC 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 290
Csp6I GTAC 3 cut(s) 44, 87, 281
CviJI RGCY 5 cut(s) 113, 146, 256, 288, 304
CviKI_1 RGCY 5 cut(s) 113, 146, 256, 288, 304
CviQI GTAC 3 cut(s) 44, 87, 281
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
Eam1104I CTCTTC 2 cut(s) 26, 202
EarI CTCTTC 2 cut(s) 26, 202
Ecl136II GAGCTC 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 148
FaiI YATR 2 cut(s) 48, 58
FriOI GRGCYC 1 cut(s) 148
FspBI CTAG 2 cut(s) 63, 68
Hpy188I TCNGA 2 cut(s) 160, 292
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 219, 309
HpyF3I CTNAG 1 cut(s) 105
KpnI GGTACC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 137, 151
LpnPI CCDG 7 cut(s) 69, 117, 120, 270, 284, 295, 297
LweI GCATC 1 cut(s) 228
MaeI CTAG 2 cut(s) 63, 68
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 6 cut(s) 43, 69, 128, 131, 144, 189
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 1 cut(s) 167
MnlI CCTC 5 cut(s) 100, 106, 244, 247, 267
MseI TTAA 2 cut(s) 17, 316
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
NdeII GATC 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 124
NspV TTCGAA 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 88
PstI CTGCAG 1 cut(s) 311
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 3 cut(s) 45, 88, 282
RsaNI GTAC 3 cut(s) 44, 87, 281
SacI GAGCTC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 17, 316
Sau3AI GATC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 148
SetI ASST 5 cut(s) 92, 115, 148, 306, 314
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 39, 129
SmoI CTYRAG 2 cut(s) 39, 129
Sse9I AATT 1 cut(s) 167
SspMI CTAG 2 cut(s) 63, 68
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 251, 298
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 43
Tru1I TTAA 2 cut(s) 17, 316
Tru9I TTAA 2 cut(s) 17, 316
TscAI CASTG 2 cut(s) 184, 215
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspRI CASTG 2 cut(s) 184, 215
XspI CTAG 2 cut(s) 63, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.