Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Forward (+)

16129185 .. 16131912

Gene Structure 2728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1202800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGATAACCGGCTGGCATCCGTGCACTCTACAGTGTTCAAAGAGTCAGAGGATTTGCAAGGCCAAAGCACCGAAATCGAAGGATATGATTTCAATCAGGGAGTAGACTACGCTCGCCTCATGAGCTCCATGCTCTCCACTGGCTTTCAAGCCTCCAATCTCGGAGATGCCATTCAAGTCGTCAACCAAATGCTAGATTGGAGGCTAGCAGATGAGGCTATAGATGAAGATTGCAGTGAGGAGGAGAGGGATTTGAAATACAGAAAGTCGGTGAAATGCAAAGTGTTCCTAGGTTTTACTTCGAATTTGGTTTCGTCGGGGATTAGAGATACAATTCGGTACTTGGTGGAGCACCATATGGTGGATGTTGTGGTTTCAACTGCTGGTGGTATAGAGGAAGATCTAATTAAATGCCTTGCGCCCACTTATAGAGGTGATTTCTCTCTGCCGGGAGCACATTTGCGGTCAAAAGGCTTGAATCGTATTGGTAATTTGCTTGTTCCTAATGGAAATTACTGCAAATTTGAGGATTGGATCATACCAATTTTCGACCAGATGTTGAAGGAACAAACTGAGCAGAACGCATTGTGGACTCCGTCTAAATTGATTGCACGCTTGGGGAAGGAAATAAATGATCGACGTTCATACCTGTATTGGGCATACAAGAACAATGTCCCAGTTTACTGTCCGGGCTTAACAGATGGCTCGCTGGGAGACATGTTGTACTTTCATTCTTTCCGCAGCCCAGGTCTGATCATCGACATAGTGCAAGATATTAGGGCCATTAATGGTGAAGCTGTCCATGCAAGCCCAAGGAAGACTGGAATGATCATACTTGGAGGGGGAATGCCCAAACATCACATTTGCAATGCCAATATGTTTCGTAATGGTGCGGATTATGCTGTCTTCATCAATACTGCACAAGAGTTTGATGGGAGTGATTCTGGAGCTCGTCCTGACGAGGCTGTATCGTGGGGGAAAATACGGGGTTCTGCCAAAACCGTCAAGGTGCATTGCGATGCAACAATTGCTTTTCCTCTGCTGGTTGCTGAAACATTTGCGAAGAACGCTGTCCAGACTACGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

364

Amino Acids

40.38

Weight (kDa)

5.43

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	41 - 352	7.6e-124	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	3 cut(s)	466, 742, 896
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	2 cut(s)	307, 524
AfaI	GTAC	2 cut(s)	344, 728
AfiI	CCNNNNNNNGG	2 cut(s)	364, 658
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	8 cut(s)	43, 97, 152, 179, 259, 381, 481, 565
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	3 cut(s)	129, 800, 953
AluI	AGCT	3 cut(s)	129, 800, 953
Alw21I	GWGCWC	5 cut(s)	30, 131, 357, 460, 955
Alw26I	GTCTC	1 cut(s)	711
Alw44I	GTGCAC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	2 cut(s)	64, 783
ApaLI	GTGCAC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	744
ApoI	RAATTY	2 cut(s)	307, 524
AseI	ATTAAT	1 cut(s)	789
AspA2I	CCTAGG	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	783
AsuC2I	CCSGG	2 cut(s)	453, 693
AsuHPI	GGTGA	3 cut(s)	286, 449, 806
AsuII	TTCGAA	1 cut(s)	305
AsuNHI	GCTAGC	1 cut(s)	208
AvrII	CCTAGG	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	30
BanII	GRGCYC	2 cut(s)	131, 955
BbsI	GAAGAC	2 cut(s)	827, 901
Bbv12I	GWGCWC	5 cut(s)	30, 131, 357, 460, 955
BbvI	GCAGC	1 cut(s)	756
BccI	CCATC	2 cut(s)	698, 929
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	1 cut(s)	750
BclI	TGATCA	2 cut(s)	756, 831
BcnI	CCSGG	2 cut(s)	453, 693
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	3 cut(s)	197, 209, 293
BfmI	CTRYAG	2 cut(s)	33, 222
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	1 cut(s)	745
BlnI	CCTAGG	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	746
Bme1390I	CCNGG	3 cut(s)	453, 693, 750
BmgT120I	GGNCC	1 cut(s)	783
BmrFI	CCNGG	3 cut(s)	453, 693, 750
BmrI	ACTGGG	1 cut(s)	674
BmsI	GCATC	3 cut(s)	29, 160, 1012
BmtI	GCTAGC	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	674
BpiI	GAAGAC	2 cut(s)	827, 901
BpmI	CTGGAG	1 cut(s)	969
Bpu14I	TTCGAA	1 cut(s)	305
BpuMI	CCSGG	2 cut(s)	453, 693
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	292, 748, 815
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 658
Bse118I	RCCGGY	1 cut(s)	12
Bse1I	ACTGG	3 cut(s)	148, 680, 829
Bse3DI	GCAATG	2 cut(s)	877, 1015
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	3 cut(s)	292, 748, 815
BseGI	GGATG	2 cut(s)	20, 373
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	364, 658
BseMI	GCAATG	2 cut(s)	877, 1015
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	3 cut(s)	148, 680, 829
BseRI	GAGGAG	2 cut(s)	257, 260
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	756
BseYI	CCCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	906
BshFI	GGCC	2 cut(s)	66, 785
BsiHKAI	GWGCWC	5 cut(s)	30, 131, 357, 460, 955
BsiSI	CCGG	3 cut(s)	13, 452, 692
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	2 cut(s)	364, 658
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	855
BsnI	GGCC	2 cut(s)	66, 785
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	5 cut(s)	30, 131, 357, 460, 955
Bsp143I	GATC	5 cut(s)	403, 537, 637, 756, 831
BspACI	CCGC	3 cut(s)	466, 742, 896
BspANI	GGCC	2 cut(s)	66, 785
BspCNI	CTCAG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	123
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	545
BspT104I	TTCGAA	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	877, 1015
BsrFI	RCCGGY	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	148, 680, 829
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	292, 748, 815
BssMI	GATC	5 cut(s)	403, 537, 637, 756, 831
BssT1I	CCWWGG	2 cut(s)	292, 815
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	3 cut(s)	37, 689, 1006
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	6 cut(s)	18, 118, 210, 616, 710, 811
BstDEI	CTNAG	1 cut(s)	576
BstF5I	GGATG	2 cut(s)	20, 373
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	5 cut(s)	406, 540, 640, 759, 834
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	5 cut(s)	403, 537, 637, 756, 831
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 218, 806, 902, 1031, 1070
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	3 cut(s)	451, 691, 748
BstSFI	CTRYAG	2 cut(s)	33, 222
BstSLI	GKGCMC	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	756
BstV2I	GAAGAC	2 cut(s)	827, 901
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	66, 785
BtgZI	GCGATG	1 cut(s)	1035
BtsCI	GGATG	2 cut(s)	20, 373
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	3 cut(s)	42, 141, 244
Cac8I	GCNNGC	6 cut(s)	18, 118, 210, 616, 710, 811
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	783
Csp6I	GTAC	2 cut(s)	343, 727
CviAII	CATG	4 cut(s)	124, 133, 721, 806
CviQI	GTAC	2 cut(s)	343, 727
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	5 cut(s)	405, 539, 639, 758, 833
DpnII	GATC	5 cut(s)	403, 537, 637, 756, 831
Ecl136II	GAGCTC	2 cut(s)	129, 953
Eco130I	CCWWGG	2 cut(s)	292, 815
Eco24I	GRGCYC	2 cut(s)	131, 955
Eco53kI	GAGCTC	2 cut(s)	129, 953
EcoICRI	GAGCTC	2 cut(s)	129, 953
EcoRII	CCWGG	1 cut(s)	748
EcoT14I	CCWWGG	2 cut(s)	292, 815
EcoT38I	GRGCYC	2 cut(s)	131, 955
ErhI	CCWWGG	2 cut(s)	292, 815
FaeI	CATG	4 cut(s)	127, 136, 724, 809
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	4 cut(s)	123, 132, 720, 805
FauNDI	CATATG	1 cut(s)	360
FbaI	TGATCA	2 cut(s)	756, 831
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	745
FokI	GGATG	2 cut(s)	7, 380
FriOI	GRGCYC	2 cut(s)	131, 955
Fsp4HI	GCNGC	1 cut(s)	745
FspBI	CTAG	3 cut(s)	197, 209, 293
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	745
GsaI	CCCAGC	1 cut(s)	716
GsuI	CTGGAG	1 cut(s)	969
HaeIII	GGCC	2 cut(s)	66, 785
HapII	CCGG	3 cut(s)	13, 452, 692
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	4 cut(s)	127, 136, 724, 809
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	4 cut(s)	47, 481, 595, 944
HpaII	CCGG	3 cut(s)	13, 452, 692
HphI	GGTGA	3 cut(s)	286, 449, 806
Hpy166II	GTNNAC	5 cut(s)	28, 109, 187, 594, 685
Hpy188I	TCNGA	3 cut(s)	52, 167, 756
Hpy188III	TCNNGA	4 cut(s)	124, 948, 959, 1078
Hpy8I	GTNNAC	5 cut(s)	28, 109, 187, 594, 685
Hpy99I	CGWCG	2 cut(s)	322, 645
HpyAV	CCTTC	3 cut(s)	77, 559, 619
HpyCH4III	ACNGT	3 cut(s)	37, 689, 1006
HpyCH4IV	ACGT	1 cut(s)	643
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 218, 806, 902, 1031, 1070
HpyF3I	CTNAG	1 cut(s)	576
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	4 cut(s)	127, 136, 724, 809
HspAI	GCGC	1 cut(s)	422
Ksp22I	TGATCA	2 cut(s)	756, 831
Kzo9I	GATC	5 cut(s)	403, 537, 637, 756, 831
LmnI	GCTCC	4 cut(s)	134, 352, 455, 950
Lsp1109I	GCAGC	1 cut(s)	756
LweI	GCATC	3 cut(s)	29, 160, 1012
MaeI	CTAG	3 cut(s)	197, 209, 293
MaeII	ACGT	1 cut(s)	643
MalI	GATC	5 cut(s)	405, 539, 639, 758, 833
MboI	GATC	5 cut(s)	403, 537, 637, 756, 831
MboII	GAAGA	6 cut(s)	17, 242, 413, 832, 901, 1078
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	5 cut(s)	30, 131, 357, 460, 955
MluCI	AATT	9 cut(s)	307, 336, 408, 493, 514, 524, 546, 605, 1029
MlyI	GAGTC	2 cut(s)	56, 589
MseI	TTAA	3 cut(s)	411, 698, 789
MslI	CAYNNNNRTG	1 cut(s)	1020
MspI	CCGG	3 cut(s)	13, 452, 692
MspR9I	CCNGG	3 cut(s)	453, 693, 750
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	6 cut(s)	126, 218, 806, 902, 1031, 1070
NciI	CCSGG	2 cut(s)	453, 693
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	5 cut(s)	403, 537, 637, 756, 831
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	127, 136, 724, 809
NspI	RCATGY	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	305
PagI	TCATGA	1 cut(s)	123
PciI	ACATGT	1 cut(s)	720
PctI	GAATGC	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	481, 944
PflFI	GACNNNGTC	1 cut(s)	598
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	746
PleI	GAGTC	2 cut(s)	55, 589
PpsI	GAGTC	2 cut(s)	55, 589
PscI	ACATGT	1 cut(s)	720
PshBI	ATTAAT	1 cut(s)	789
Psp124BI	GAGCTC	2 cut(s)	131, 955
Psp6I	CCWGG	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	748
PspPI	GGNCC	1 cut(s)	783
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	598
RsaI	GTAC	2 cut(s)	344, 728
RsaNI	GTAC	2 cut(s)	343, 727
RseI	CAYNNNNRTG	1 cut(s)	1020
SacI	GAGCTC	2 cut(s)	131, 955
SaqAI	TTAA	3 cut(s)	411, 698, 789
SatI	GCNGC	1 cut(s)	745
Sau3AI	GATC	5 cut(s)	403, 537, 637, 756, 831
Sau96I	GGNCC	1 cut(s)	783
SchI	GAGTC	2 cut(s)	56, 589
ScrFI	CCNGG	3 cut(s)	453, 693, 750
SduI	GDGCHC	5 cut(s)	30, 131, 357, 460, 955
SetI	ASST	9 cut(s)	131, 298, 439, 646, 654, 754, 802, 955, 1014
SfaNI	GCATC	3 cut(s)	29, 160, 1012
SfcI	CTRYAG	2 cut(s)	33, 222
SfuI	TTCGAA	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	1020
Sse9I	AATT	9 cut(s)	307, 336, 408, 493, 514, 524, 546, 605, 1029
SsiI	CCGC	3 cut(s)	466, 742, 896
SspMI	CTAG	3 cut(s)	197, 209, 293
SstI	GAGCTC	2 cut(s)	131, 955
StyD4I	CCNGG	3 cut(s)	451, 691, 748
StyI	CCWWGG	2 cut(s)	292, 815
TaaI	ACNGT	3 cut(s)	37, 689, 1006
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	5 cut(s)	81, 305, 552, 640, 762
TasI	AATT	9 cut(s)	307, 336, 408, 493, 514, 524, 546, 605, 1029
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	2 cut(s)	481, 944
Tru1I	TTAA	3 cut(s)	411, 698, 789
Tru9I	TTAA	3 cut(s)	411, 698, 789
TscAI	CASTG	3 cut(s)	42, 148, 244
TseI	GCWGC	1 cut(s)	744
TspDTI	ATGAA	4 cut(s)	243, 636, 722, 901
TspGWI	ACGGA	2 cut(s)	13, 588
TspRI	CASTG	3 cut(s)	42, 148, 244
Tth111I	GACNNNGTC	1 cut(s)	598
Van91I	CCANNNNNTGG	1 cut(s)	364
VneI	GTGCAC	1 cut(s)	26
VspI	ATTAAT	1 cut(s)	789
XapI	RAATTY	2 cut(s)	307, 524
XceI	RCATGY	1 cut(s)	724
XmaJI	CCTAGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	3 cut(s)	197, 209, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.