Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Forward (+)

3880433 .. 3880861

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAATGATGAAGCTGTCCATGCAAGCCCAAGGAAGACTGGAATGATCATTCTCGGAGGTGGCCTGCCCAAACATCACATTTCCAATGCCAATATGTTTCGTAATGGTGCGGATTATGCTGTCTTCATCAATACTACGCAAGAGTTTGATGGGAATGATTCCGGAGCGCGTCCTGACGAGGCTGTATCATGGGGAAAAATACGGGATTCTGCCAAAACTGTCAAGGAATTACTGAATTTAACCCATATATTTGCTTTTCTCATTGCGTTTTATCTCTTGTTTTTGGCCGGATTGTTAATCATAACTTCGTATCCACCTAATCCTAGCCCTTCTAGCGTTTTCTTTTGTATCCTTTGCATTCTTGAATATGTCATCCTCGTTTCTGTTGTAATATCATTCGGATTATTCTCCACCTTTTTTATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

143

Amino Acids

15.58

Weight (kDa)

6.02

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	5 - 87	8.1e-29	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	169
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	365
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	2 cut(s)	61, 285
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	169
BbsI	GAAGAC	2 cut(s)	41, 115
BccI	CCATC	1 cut(s)	143
BciVI	GTATCC	2 cut(s)	321, 359
BclI	TGATCA	1 cut(s)	45
BfaI	CTAG	2 cut(s)	324, 333
BfuI	GTATCC	2 cut(s)	321, 359
BpiI	GAAGAC	2 cut(s)	41, 115
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	63, 287
BsiSI	CCGG	2 cut(s)	162, 288
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	63, 287
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	63, 287
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	25, 65
BstF5I	GGATG	1 cut(s)	372
BstFNI	CGCG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 116, 333
BstUI	CGCG	1 cut(s)	169
BstV2I	GAAGAC	2 cut(s)	41, 115
BsuI	GTATCC	2 cut(s)	321, 359
BsuRI	GGCC	2 cut(s)	63, 287
BtsCI	GGATG	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	25, 65
CfoI	GCGC	1 cut(s)	169
CseI	GACGC	1 cut(s)	158
CviAII	CATG	2 cut(s)	20, 189
CviJI	RGCY	6 cut(s)	14, 27, 63, 182, 287, 327
CviKI_1	RGCY	6 cut(s)	14, 27, 63, 182, 287, 327
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	2 cut(s)	23, 192
FaiI	YATR	8 cut(s)	21, 95, 117, 190, 246, 248, 302, 369
FatI	CATG	2 cut(s)	19, 188
FbaI	TGATCA	1 cut(s)	45
FokI	GGATG	1 cut(s)	359
FspBI	CTAG	2 cut(s)	324, 333
GlaI	GCGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	63, 287
HapII	CCGG	2 cut(s)	162, 288
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	23, 192
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	158, 206
HpaII	CCGG	2 cut(s)	162, 288
Hpy188I	TCNGA	2 cut(s)	56, 401
Hpy188III	TCNNGA	3 cut(s)	162, 173, 362
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	23, 357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 116, 333
Hsp92II	CATG	2 cut(s)	23, 192
HspAI	GCGC	1 cut(s)	167
Kpn2I	TCCGGA	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	5 cut(s)	24, 77, 175, 186, 301
MaeI	CTAG	2 cut(s)	324, 333
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	2 cut(s)	46, 115
MluCI	AATT	2 cut(s)	227, 235
MnlI	CCTC	3 cut(s)	50, 172, 386
MroI	TCCGGA	1 cut(s)	161
MseI	TTAA	2 cut(s)	239, 296
MspI	CCGG	2 cut(s)	162, 288
Mva1269I	GAATGC	1 cut(s)	357
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	20, 116, 333
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	2 cut(s)	23, 192
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	158, 206
SaqAI	TTAA	2 cut(s)	239, 296
Sau3AI	GATC	1 cut(s)	45
SetI	ASST	4 cut(s)	16, 61, 319, 416
Sse9I	AATT	2 cut(s)	227, 235
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	324, 333
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	220
TasI	AATT	2 cut(s)	227, 235
TfiI	GAWTC	2 cut(s)	158, 206
Tru1I	TTAA	2 cut(s)	239, 296
Tru9I	TTAA	2 cut(s)	239, 296
TspDTI	ATGAA	3 cut(s)	17, 24, 115
XapI	RAATTY	1 cut(s)	235
XspI	CTAG	2 cut(s)	324, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.