Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Reverse (-)

26296528 .. 26299264

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG226300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAAATTTTCGAAATACCGGGATGTATCCTCTCTTCCTTTCAGCAATTACACCACAATGCCATCAAACCTTTCTCTTCCGTGTTCAGAAGTCGAGGCCTCCAGCGCTGCAGTGAACACGCACAAGCCATCTCGATCGCTGACTGCCTCCTCTCATTCGTGGTCGAAAATTGCCCTCAATCCAATCCCCAGATTTTCGTACCAGGCTCTGAAAATCAAAAGCTTTCCAGGTATTAATAACTCCTCCCTTTTCCAGTTTTGCATTTCAGTTCCTATTTCATCTTTCATTTCACACTCTATGATTCCCTATCTGGGTTCTTCTTTGATTCGCTTGATGCTTGTCTGGGTCATGCTTTTATATTCAATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.68

Weight (kDa)

9.8

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	1 cut(s)	200
AfeI	AGCGCT	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	363
AjnI	CCWGG	2 cut(s)	201, 226
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
AlwNI	CAGNNNCTG	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	106
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	11
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	2 cut(s)	70, 136
BciT130I	CCWGG	2 cut(s)	203, 228
BciVI	GTATCC	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	3 cut(s)	20, 203, 228
BmrFI	CCNGG	3 cut(s)	20, 203, 228
BmsI	GCATC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	85
Bpu14I	TTCGAA	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	203, 228
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	139, 232
BseXI	GCAGC	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	311
BsnI	GGCC	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	98
BspMAI	CTGCAG	1 cut(s)	112
BspT104I	TTCGAA	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	134
Bst2UI	CCWGG	2 cut(s)	203, 228
Bst6I	CTCTTC	2 cut(s)	39, 81
BstBI	TTCGAA	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	134
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	2 cut(s)	203, 228
BstSCI	CCNGG	3 cut(s)	18, 201, 226
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	208
CfoI	GCGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	4 cut(s)	98, 127, 206, 222
CviKI_1	RGCY	4 cut(s)	98, 127, 206, 222
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	39, 81
EarI	CTCTTC	2 cut(s)	39, 81
Eco147I	AGGCCT	1 cut(s)	98
Eco47III	AGCGCT	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	201, 226
FaeI	CATG	1 cut(s)	352
FaiI	YATR	3 cut(s)	299, 350, 358
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	108
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	19
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	2 cut(s)	301, 325
HpaII	CCGG	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	88, 210
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	110, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	134
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	324
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	3 cut(s)	26, 68, 309
MluCI	AATT	4 cut(s)	5, 46, 168, 363
MnlI	CCTC	7 cut(s)	40, 88, 109, 157, 160, 185, 253
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	3 cut(s)	20, 203, 228
MvaI	CCWGG	2 cut(s)	203, 228
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	301, 325
PkrI	GCNGC	1 cut(s)	109
Ple19I	CGATCG	1 cut(s)	137
PshBI	ATTAAT	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	201, 226
PspGI	CCWGG	2 cut(s)	201, 226
PstI	CTGCAG	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	208
PvuI	CGATCG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	20, 203, 228
SetI	ASST	3 cut(s)	72, 224, 232
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	4 cut(s)	5, 46, 168, 363
SseBI	AGGCCT	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	3 cut(s)	18, 201, 226
TaqI	TCGA	4 cut(s)	11, 93, 133, 164
TasI	AATT	4 cut(s)	5, 46, 168, 363
TfiI	GAWTC	2 cut(s)	301, 325
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	17, 267, 274
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	117
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.