Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Forward (+)

57767056 .. 57775828

Gene Structure 8773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG391200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGATGCGCAATGGTGCGGATTATGCTGTGTTCATTAATACTTCACAAGAGTATGATGGTAGTGATTTTGGAGCACGTCCTGATGAGGCTGTGTCATGGGGAAAATACGGGGTTCTGCTAACACTGTCAAGCCTCAATCCAATCCCTATATTTTCGTACCAGGCTCTGAAAATCGAAAGCTTTCCAGGTACTAAAGCTTGGGCTACTTTTGATTGCGAAGACAGTTCCATTTTGCTGATCAACCAAGAAGCTTCTTGCATAACTGAGGTGTCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

92

Amino Acids

10.14

Weight (kDa)

4.13

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	1 - 36	5.1e-12	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
AciI	CCGC	1 cut(s)	17
AfaI	GTAC	2 cut(s)	158, 190
AjiI	CACGTC	1 cut(s)	77
AjnI	CCWGG	2 cut(s)	159, 184
AluBI	AGCT	3 cut(s)	180, 197, 251
AluI	AGCT	3 cut(s)	180, 197, 251
Alw21I	GWGCWC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	166
AseI	ATTAAT	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	161, 186
BclI	TGATCA	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	161, 186
BmgBI	CACGTC	1 cut(s)	77
BmrFI	CCNGG	2 cut(s)	161, 186
BpiI	GAAGAC	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	161, 186
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	16
BssMI	GATC	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	161, 186
Bst4CI	ACNGT	2 cut(s)	126, 224
BstDEI	CTNAG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	161, 186
BstSCI	CCNGG	2 cut(s)	159, 184
BstV2I	GAAGAC	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	157, 189
CviAII	CATG	1 cut(s)	96
CviJI	RGCY	7 cut(s)	89, 132, 164, 180, 197, 203, 251
CviKI_1	RGCY	7 cut(s)	89, 132, 164, 180, 197, 203, 251
CviQI	GTAC	2 cut(s)	157, 189
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	159, 184
FaeI	CATG	1 cut(s)	99
FaiI	YATR	5 cut(s)	24, 54, 97, 149, 260
FatI	CATG	1 cut(s)	95
FbaI	TGATCA	1 cut(s)	237
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	99
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	3 cut(s)	178, 195, 249
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	126, 224
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	99
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	5 cut(s)	93, 146, 171, 173, 198
MaeII	ACGT	1 cut(s)	76
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	76
MnlI	CCTC	3 cut(s)	79, 143, 259
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	1 cut(s)	36
MspR9I	CCNGG	2 cut(s)	161, 186
MvaI	CCWGG	2 cut(s)	161, 186
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	1 cut(s)	99
NsbI	TGCGCA	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	180
PshBI	ATTAAT	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	159, 184
PspGI	CCWGG	2 cut(s)	159, 184
PstNI	CAGNNNCTG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	158, 190
RsaNI	GTAC	2 cut(s)	157, 189
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	161, 186
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	6 cut(s)	79, 182, 190, 199, 253, 270
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	159, 184
TaaI	ACNGT	2 cut(s)	126, 224
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.