Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Forward (+)

5586933 .. 5589010

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG073000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGACGGTAAAATGGCAAGCGTGCACTCCACAGTGTTCAAAGAATCAGAGAATTTGCAAGGCAAATGCAGCGAAATCAAAGGCTACGATTTCAACGAGGGACTCGATTACTCTCGCCTCTTCGGTTCGATGATCACTACTGGTTTCCAAGCCACCAATCTCGGAGAAGCCATCGAAGTCGTCAACCAAATGCTAGATTGGAGGCTGGCAGATGAGGCTGTAGCTGAGGATTGCGGTGAGGAGGAGAGGGATGGGAAGTTTAGGGAGTCTGTCAAGTGTAAAGTGTTTTTGGGGTTCACTTCGAATTTGGTTTCGTCTGGGCTTAGAGATGTGTTTAGGTACTTGGTGGAGCACCATGCGGTGGATGTGGTGGTCACAACTGCTGGTGGCATTGAGGAGGATCTTATCAAATGCCTTGCGCCGACTTATAAGGGTGATTTCGCTCTAGCAGGGGAGTATTTGAGGTCCAAGGGATTGAATCGTATCGGTAATTTACTGGTTCCTAATGATAACTATTGCAAATTTGAGGATTGGATCTTACCGATTTTCGATCAGATGTTGAAGGAACAGAATGAACAGAATGTGCTGTGGACGCCATCTAAATTGATTGCACGCTTGGGGAAGGAAATAAATGATGAAAGATCGTATCTTTACTGGGCATACAAGAACAATGTCCCAGTTTACTGTCCATCCATAACAGATGGCTCATTGGGAGACATGTTGTACTTCCATTCTTTCCGCAGCCCAGGTCTGGTTGTTGACATAGTGCAAGATATTAGGGCCATGAATGGTGAAGCTGTTCATGCAGGTCTGAGGAAGACTGGAATGATCATCCTCGGAGGAGGCCTGCCCAAACATCACATTTGCAATGCTAATATGATGCGCAATGGTGCTGATTATGCTGTGTTTATTAACACTGCACAGGAGTATGATGGTAGTGATTCTGGAGCTCGTCCTGATGAGGCTGTCTCCTGGGGGAAAATACGGGGTTCTGCCAAAACTGTTAAGGTGCACTGTGATGCAACAATTGCTTTCCCTTTTCTGGTTGCTGAGACATTTGCAAAGAAAGTTAGCAAGACTACGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

363

Amino Acids

40.34

Weight (kDa)

5.31

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	41 - 352	2.3e-123	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
Acc16I	TGCGCA	1 cut(s)	887
Acc36I	ACCTGC	1 cut(s)	800
AccB7I	CCANNNNNTGG	1 cut(s)	364
AciI	CCGC	3 cut(s)	237, 362, 742
AclWI	GGATC	2 cut(s)	411, 545
AcsI	RAATTY	3 cut(s)	55, 307, 524
AcyI	GRCGYC	1 cut(s)	596
AfaI	GTAC	2 cut(s)	344, 728
AfiI	CCNNNNNNNGG	3 cut(s)	364, 754, 1045
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	4 cut(s)	43, 97, 481, 565
AjnI	CCWGG	2 cut(s)	748, 974
AluBI	AGCT	3 cut(s)	227, 800, 953
AluI	AGCT	3 cut(s)	227, 800, 953
Alw21I	GWGCWC	4 cut(s)	30, 357, 955, 1017
Alw26I	GTCTC	3 cut(s)	711, 976, 1049
Alw44I	GTGCAC	2 cut(s)	26, 1013
AlwI	GGATC	2 cut(s)	411, 545
AoxI	GGCC	2 cut(s)	783, 847
ApaLI	GTGCAC	2 cut(s)	26, 1013
ApeKI	GCWGC	2 cut(s)	72, 744
ApoI	RAATTY	3 cut(s)	55, 307, 524
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	2 cut(s)	424, 888
AspS9I	GGNCC	2 cut(s)	468, 783
AsuHPI	GGTGA	3 cut(s)	251, 449, 806
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	468
BaeGI	GKGCMC	2 cut(s)	30, 1017
BanII	GRGCYC	1 cut(s)	955
BbsI	GAAGAC	2 cut(s)	12, 827
Bbv12I	GWGCWC	4 cut(s)	30, 357, 955, 1017
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	84, 756
BccI	CCATC	6 cut(s)	182, 248, 607, 698, 700, 929
BciT130I	CCWGG	2 cut(s)	750, 976
BclI	TGATCA	2 cut(s)	135, 831
BcoDI	GTCTC	3 cut(s)	711, 976, 1049
BfaI	CTAG	3 cut(s)	197, 449, 1090
BfmI	CTRYAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	800
BisI	GCNGC	2 cut(s)	73, 745
BlsI	GCNGC	2 cut(s)	74, 746
Bme1390I	CCNGG	2 cut(s)	750, 976
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	2 cut(s)	468, 783
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	2 cut(s)	750, 976
BmrI	ACTGGG	2 cut(s)	667, 674
BmsI	GCATC	2 cut(s)	873, 1012
BmuI	ACTGGG	2 cut(s)	667, 674
BpiI	GAAGAC	2 cut(s)	12, 827
BplI	GAGNNNNNCTC	2 cut(s)	956, 988
BpmI	CTGGAG	1 cut(s)	969
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	596
BsaJI	CCNNGG	4 cut(s)	471, 748, 838, 975
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 754, 1045
Bse1I	ACTGG	5 cut(s)	148, 504, 662, 680, 829
Bse3DI	GCAATG	2 cut(s)	877, 895
BseBI	CCWGG	2 cut(s)	750, 976
BseDI	CCNNGG	4 cut(s)	471, 748, 838, 975
BseGI	GGATG	4 cut(s)	259, 373, 692, 834
BseLI	CCNNNNNNNGG	3 cut(s)	364, 754, 1045
BseMI	GCAATG	2 cut(s)	877, 895
BseMII	CTCAG	3 cut(s)	219, 806, 1044
BseNI	ACTGG	5 cut(s)	148, 504, 662, 680, 829
BseRI	GAGGAG	4 cut(s)	257, 260, 413, 858
BseSI	GKGCMC	2 cut(s)	30, 1017
BseXI	GCAGC	2 cut(s)	84, 756
BsgI	GTGCAG	1 cut(s)	906
BshFI	GGCC	2 cut(s)	785, 849
BsiHKAI	GWGCWC	4 cut(s)	30, 357, 955, 1017
BslFI	GGGAC	2 cut(s)	117, 662
BslI	CCNNNNNNNGG	3 cut(s)	364, 754, 1045
BsmAI	GTCTC	3 cut(s)	711, 976, 1049
BsmFI	GGGAC	2 cut(s)	117, 662
BsnI	GGCC	2 cut(s)	785, 849
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	4 cut(s)	30, 357, 955, 1017
Bsp143I	GATC	6 cut(s)	135, 403, 537, 553, 644, 831
BspACI	CCGC	3 cut(s)	237, 362, 742
BspANI	GGCC	2 cut(s)	785, 849
BspCNI	CTCAG	3 cut(s)	220, 807, 1045
BspLI	GGNNCC	1 cut(s)	504
BspMI	ACCTGC	1 cut(s)	800
BspPI	GGATC	2 cut(s)	411, 545
BspT104I	TTCGAA	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	877, 895
BsrI	ACTGG	5 cut(s)	148, 504, 662, 680, 829
BssECI	CCNNGG	4 cut(s)	471, 748, 838, 975
BssMI	GATC	6 cut(s)	135, 403, 537, 553, 644, 831
BssNI	GRCGYC	1 cut(s)	596
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	750, 976
Bst4CI	ACNGT	5 cut(s)	11, 37, 689, 1006, 1019
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	5 cut(s)	22, 26, 210, 616, 851
BstDEI	CTNAG	4 cut(s)	228, 326, 815, 1053
BstF5I	GGATG	4 cut(s)	259, 373, 692, 834
BstHHI	GCGC	2 cut(s)	424, 888
BstKTI	GATC	6 cut(s)	138, 406, 540, 556, 647, 834
BstMAI	GTCTC	3 cut(s)	711, 976, 1049
BstMBI	GATC	6 cut(s)	135, 403, 537, 553, 644, 831
BstMWI	GCNNNNNNNGC	6 cut(s)	72, 218, 595, 806, 902, 1031
BstNI	CCWGG	2 cut(s)	750, 976
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	748, 974
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	2 cut(s)	30, 1017
BstV1I	GCAGC	2 cut(s)	84, 756
BstV2I	GAAGAC	2 cut(s)	12, 827
BstX2I	RGATCY	2 cut(s)	403, 537
BstYI	RGATCY	2 cut(s)	403, 537
BsuRI	GGCC	2 cut(s)	785, 849
BtsCI	GGATG	4 cut(s)	259, 373, 692, 834
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	3 cut(s)	42, 918, 1015
BveI	ACCTGC	1 cut(s)	800
Cac8I	GCNNGC	5 cut(s)	22, 26, 210, 616, 851
CfoI	GCGC	2 cut(s)	424, 888
Cfr13I	GGNCC	2 cut(s)	468, 783
CseI	GACGC	1 cut(s)	604
Csp6I	GTAC	2 cut(s)	343, 727
CviAII	CATG	4 cut(s)	359, 721, 787, 806
CviQI	GTAC	2 cut(s)	343, 727
DdeI	CTNAG	4 cut(s)	228, 326, 815, 1053
DpnI	GATC	6 cut(s)	137, 405, 539, 555, 646, 833
DpnII	GATC	6 cut(s)	135, 403, 537, 553, 644, 831
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	953
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	955
Eco47I	GGWCC	1 cut(s)	468
Eco53kI	GAGCTC	1 cut(s)	953
EcoICRI	GAGCTC	1 cut(s)	953
EcoRII	CCWGG	2 cut(s)	748, 974
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	955
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	4 cut(s)	362, 724, 790, 809
FaqI	GGGAC	2 cut(s)	117, 662
FatI	CATG	4 cut(s)	358, 720, 786, 805
FbaI	TGATCA	2 cut(s)	135, 831
Fnu4HI	GCNGC	2 cut(s)	73, 745
FokI	GGATG	4 cut(s)	266, 380, 679, 821
FriOI	GRGCYC	1 cut(s)	955
Fsp4HI	GCNGC	2 cut(s)	73, 745
FspBI	CTAG	3 cut(s)	197, 449, 1090
FspI	TGCGCA	1 cut(s)	887
GlaI	GCGC	2 cut(s)	423, 887
GluI	GCNGC	2 cut(s)	73, 745
GsuI	CTGGAG	1 cut(s)	969
HaeIII	GGCC	2 cut(s)	785, 849
HgaI	GACGC	1 cut(s)	604
HhaI	GCGC	2 cut(s)	424, 888
Hin1I	GRCGYC	1 cut(s)	596
Hin1II	CATG	4 cut(s)	362, 724, 790, 809
Hin6I	GCGC	2 cut(s)	422, 886
HinP1I	GCGC	2 cut(s)	422, 886
HincII	GTYRAC	2 cut(s)	187, 763
HindII	GTYRAC	2 cut(s)	187, 763
HinfI	GANTC	5 cut(s)	47, 105, 269, 481, 944
HphI	GGTGA	3 cut(s)	251, 449, 806
Hpy166II	GTNNAC	7 cut(s)	28, 187, 300, 594, 685, 763, 1015
Hpy188I	TCNGA	5 cut(s)	52, 167, 558, 816, 842
Hpy188III	TCNNGA	2 cut(s)	948, 959
Hpy8I	GTNNAC	7 cut(s)	28, 187, 300, 594, 685, 763, 1015
HpyAV	CCTTC	2 cut(s)	559, 619
HpyCH4III	ACNGT	5 cut(s)	11, 37, 689, 1006, 1019
HpyF10VI	GCNNNNNNNGC	6 cut(s)	72, 218, 595, 806, 902, 1031
HpyF3I	CTNAG	4 cut(s)	228, 326, 815, 1053
Hsp92I	GRCGYC	1 cut(s)	596
Hsp92II	CATG	4 cut(s)	362, 724, 790, 809
HspAI	GCGC	2 cut(s)	422, 886
Ksp22I	TGATCA	2 cut(s)	135, 831
Kzo9I	GATC	6 cut(s)	135, 403, 537, 553, 644, 831
LmnI	GCTCC	2 cut(s)	352, 950
Lsp1109I	GCAGC	2 cut(s)	84, 756
LweI	GCATC	2 cut(s)	873, 1012
MaeI	CTAG	3 cut(s)	197, 449, 1090
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	6 cut(s)	137, 405, 539, 555, 646, 833
MboI	GATC	6 cut(s)	135, 403, 537, 553, 644, 831
MboII	GAAGA	3 cut(s)	17, 115, 832
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	2 cut(s)	403, 537
MhlI	GDGCHC	4 cut(s)	30, 357, 955, 1017
MluCI	AATT	6 cut(s)	55, 307, 493, 524, 605, 1029
MlyI	GAGTC	2 cut(s)	99, 278
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	2 cut(s)	915, 1008
MslI	CAYNNNNRTG	1 cut(s)	1020
MspR9I	CCNGG	2 cut(s)	750, 976
MunI	CAATTG	1 cut(s)	1029
MvaI	CCWGG	2 cut(s)	750, 976
MwoI	GCNNNNNNNGC	6 cut(s)	72, 218, 595, 806, 902, 1031
NdeII	GATC	6 cut(s)	135, 403, 537, 553, 644, 831
NlaIII	CATG	4 cut(s)	362, 724, 790, 809
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	1 cut(s)	376
NsbI	TGCGCA	1 cut(s)	887
NspI	RCATGY	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	849
PciI	ACATGT	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 105
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	3 cut(s)	47, 481, 944
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	74, 746
PleI	GAGTC	2 cut(s)	99, 277
PpsI	GAGTC	2 cut(s)	99, 277
PscI	ACATGT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	955
Psp6I	CCWGG	2 cut(s)	748, 974
PspGI	CCWGG	2 cut(s)	748, 974
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	468, 783
PsuI	RGATCY	2 cut(s)	403, 537
RsaI	GTAC	2 cut(s)	344, 728
RsaNI	GTAC	2 cut(s)	343, 727
RseI	CAYNNNNRTG	1 cut(s)	1020
SacI	GAGCTC	1 cut(s)	955
SaqAI	TTAA	2 cut(s)	915, 1008
SatI	GCNGC	2 cut(s)	73, 745
Sau3AI	GATC	6 cut(s)	135, 403, 537, 553, 644, 831
Sau96I	GGNCC	2 cut(s)	468, 783
SchI	GAGTC	2 cut(s)	99, 278
ScrFI	CCNGG	2 cut(s)	750, 976
SduI	GDGCHC	4 cut(s)	30, 357, 955, 1017
SetI	ASST	9 cut(s)	229, 344, 470, 754, 802, 814, 955, 1014, 1091
SfaNI	GCATC	2 cut(s)	873, 1012
SfcI	CTRYAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	1020
Sse9I	AATT	6 cut(s)	55, 307, 493, 524, 605, 1029
SseBI	AGGCCT	1 cut(s)	849
SsiI	CCGC	3 cut(s)	237, 362, 742
SspMI	CTAG	3 cut(s)	197, 449, 1090
SstI	GAGCTC	1 cut(s)	955
StuI	AGGCCT	1 cut(s)	849
StyD4I	CCNGG	2 cut(s)	748, 974
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	5 cut(s)	11, 37, 689, 1006, 1019
TaqI	TCGA	5 cut(s)	108, 131, 177, 305, 552
TasI	AATT	6 cut(s)	55, 307, 493, 524, 605, 1029
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	3 cut(s)	47, 481, 944
Tru1I	TTAA	2 cut(s)	915, 1008
Tru9I	TTAA	2 cut(s)	915, 1008
TscAI	CASTG	3 cut(s)	42, 925, 1022
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	72, 744
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	591, 654, 794, 803
TspRI	CASTG	3 cut(s)	42, 925, 1022
Van91I	CCANNNNNTGG	1 cut(s)	364
VneI	GTGCAC	2 cut(s)	26, 1013
VpaK11BI	GGWCC	1 cut(s)	468
XapI	RAATTY	3 cut(s)	55, 307, 524
XceI	RCATGY	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	3 cut(s)	197, 449, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.