Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Forward (+)

58553742 .. 58554148

Gene Structure 407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGATGCGCAATGGTGCGGATTATGCTGTGTTCATTAATACTTCACAAGAGTATGATGGTAGTGATTTTGGAGCACGTCCTGATGAGGCTGTGTCATGGGGAAAATACGGGGTTTCTGCTAACACTGTCAAGGTGCACTGTGATGCAACAATTGCTTTCCCTTTTCTGGTCGCTGAGACATTTGCAAAGAAAGTTAGCAAGACTACGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

70

Amino Acids

7.61

Weight (kDa)

5.61

Isoelectric Point (pI)

18.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	1 - 60	1e-22	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
AciI	CCGC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	166
AjiI	CACGTC	1 cut(s)	77
Alw21I	GWGCWC	2 cut(s)	76, 138
Alw26I	GTCTC	1 cut(s)	170
Alw44I	GTGCAC	1 cut(s)	134
ApaLI	GTGCAC	1 cut(s)	134
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	76, 138
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	77
BmsI	GCATC	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	76, 138
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	76, 138
BspACI	CCGC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	127, 140
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 152
BstSLI	GKGCMC	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	123, 136
CfoI	GCGC	1 cut(s)	9
CviAII	CATG	1 cut(s)	96
CviJI	RGCY	1 cut(s)	89
CviKI_1	RGCY	1 cut(s)	89
DdeI	CTNAG	1 cut(s)	174
FaeI	CATG	1 cut(s)	99
FaiI	YATR	3 cut(s)	24, 54, 97
FatI	CATG	1 cut(s)	95
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	99
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	127, 140
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	136, 146, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 152
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	99
HspAI	GCGC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	2 cut(s)	93, 152
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	76
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	76, 138
MluCI	AATT	1 cut(s)	150
MnlI	CCTC	1 cut(s)	79
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	23, 152
NlaIII	CATG	1 cut(s)	99
NsbI	TGCGCA	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	36
SduI	GDGCHC	2 cut(s)	76, 138
SetI	ASST	3 cut(s)	79, 135, 212
SfaNI	GCATC	1 cut(s)	133
SgeI	CNNG	7 cut(s)	59, 87, 92, 108, 121, 142, 179
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	127, 140
TaiI	ACGT	1 cut(s)	79
TasI	AATT	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	2 cut(s)	130, 143
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	130, 143
VneI	GTGCAC	1 cut(s)	134
VspI	ATTAAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.