Rh6DG378400

Deoxyhypusine synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002811
Physical Location & Seq
Forward (+)
57249701 .. 57250200
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG378400.1

Sequence Viewer

Length: 345 bp
ATGAATGGTGAAACTGTTCATGCAGGTCTGAGGGAGACTGGAATGATCATCCTAGAAAGGCCTGCCCAAAATGCTAATATGATGCGCAATGGTGCGGATTTTGCTGTGTTCATTAATACTTCACAAGAGTATGATGGTAGTGATTTTGGAGCACGTCCTGATGAGGTTGTGTCATGGGGAAAATACGGGGTTTCGCTAACACTGTTAAGGTGCACTGTGATGCAACAATTGCTTTCCCTTTTCTGGTCGCTGAGACATTTGCAAAGAAAGTTAGCAAGACTACGACCTAAGACAGAAATCTGTCCTCAAGATTTGTTTAGAATATACAGTTATAGTTGGTCATGA

Protein Analysis

114

Amino Acids

13.1

Weight (kDa)

8.71

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DS PF01916 22 - 63 2e-12 Deoxyhypusine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 14
AciI CCGC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 243
AjiI CACGTC 1 cut(s) 155
Alw21I GWGCWC 2 cut(s) 154, 215
Alw26I GTCTC 2 cut(s) 29, 247
Alw44I GTGCAC 1 cut(s) 211
AoxI GGCC 1 cut(s) 59
ApaLI GTGCAC 1 cut(s) 211
AseI ATTAAT 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 154, 215
BccI CCATC 1 cut(s) 128
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 29, 247
BfaI CTAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 14
BmgBI CACGTC 1 cut(s) 155
BmsI GCATC 2 cut(s) 72, 210
BpuEI CTTGAG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 94
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 20, 242
BseNI ACTGG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 215
BshFI GGCC 1 cut(s) 61
BsiHKAI GWGCWC 2 cut(s) 154, 215
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 29, 247
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 154, 215
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 21, 243
BspHI TCATGA 1 cut(s) 341
BspMI ACCTGC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 43
BssMI GATC 1 cut(s) 45
Bst4CI ACNGT 4 cut(s) 16, 204, 217, 329
BstAPI GCANNNNNTGC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 3 cut(s) 29, 251, 288
BstF5I GGATG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 2 cut(s) 29, 247
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 71, 101, 229
BstSLI GKGCMC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 61
BtrI CACGTC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 200, 213
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 63
CciI TCATGA 1 cut(s) 341
CfoI GCGC 1 cut(s) 87
CviAII CATG 3 cut(s) 20, 174, 342
CviJI RGCY 1 cut(s) 61
CviKI_1 RGCY 1 cut(s) 61
DdeI CTNAG 3 cut(s) 29, 251, 288
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 61
FaeI CATG 3 cut(s) 23, 177, 345
FaiI YATR 7 cut(s) 21, 80, 132, 175, 325, 333, 343
FatI CATG 3 cut(s) 19, 173, 341
FbaI TGATCA 1 cut(s) 45
FokI GGATG 1 cut(s) 35
FspBI CTAG 1 cut(s) 53
FspI TGCGCA 1 cut(s) 86
GlaI GCGC 1 cut(s) 86
HaeIII GGCC 1 cut(s) 61
HhaI GCGC 1 cut(s) 87
Hin1II CATG 3 cut(s) 23, 177, 345
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 158, 308, 342
Hpy8I GTNNAC 1 cut(s) 213
HpyCH4III ACNGT 4 cut(s) 16, 204, 217, 329
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 4 cut(s) 23, 213, 223, 262
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 101, 229
HpyF3I CTNAG 3 cut(s) 29, 251, 288
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 3 cut(s) 23, 177, 345
HspAI GCGC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 5 cut(s) 9, 24, 75, 171, 229
LweI GCATC 2 cut(s) 72, 210
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 154
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MfeI CAATTG 1 cut(s) 227
MhlI GDGCHC 2 cut(s) 154, 215
MluCI AATT 1 cut(s) 227
MnlI CCTC 3 cut(s) 24, 157, 315
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 2 cut(s) 114, 206
MslI CAYNNNNRTG 1 cut(s) 218
MunI CAATTG 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 71, 101, 229
NdeII GATC 1 cut(s) 45
NlaIII CATG 3 cut(s) 23, 177, 345
NsbI TGCGCA 1 cut(s) 86
PagI TCATGA 1 cut(s) 341
PceI AGGCCT 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 15
PshBI ATTAAT 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 114, 206
Sau3AI GATC 1 cut(s) 45
SduI GDGCHC 2 cut(s) 154, 215
SetI ASST 5 cut(s) 28, 157, 168, 212, 289
SfaNI GCATC 2 cut(s) 72, 210
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 1 cut(s) 227
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 1 cut(s) 95
SspMI CTAG 1 cut(s) 53
StuI AGGCCT 1 cut(s) 61
TaaI ACNGT 4 cut(s) 16, 204, 217, 329
TaiI ACGT 1 cut(s) 157
TasI AATT 1 cut(s) 227
Tru1I TTAA 2 cut(s) 114, 206
Tru9I TTAA 2 cut(s) 114, 206
TscAI CASTG 2 cut(s) 207, 220
TspDTI ATGAA 3 cut(s) 8, 17, 100
TspRI CASTG 2 cut(s) 207, 220
VneI GTGCAC 1 cut(s) 211
VspI ATTAAT 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.