Rh2AG333600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002811
Physical Location & Seq
Reverse (-)
48228592 .. 48237788
9197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG333600.1

Sequence Viewer

Length: 342 bp
ATGGGGTGGAACAGCCACTACCTCCGTTCCCGCAGCATTGGCAGCTTTAACACCAACCCTGTTGAAATAGAATTCAAACACTTATATGATATTGGTCATTCTCAACAAGAATCTGAAGCAATTACACCACAATGCCATCAAACCCTTCTCTTCCGTGTTCAAAAGTCGAACTCCAGCGCCGCAGTGAACACACTGACTGCCTCCTCTCATTCGTGTTCGAAGCCTCAATCCAATCCCCAGATTTTCGTACCAGGGCAGGCTCTGAAAATCGAAAGCTTTCCAGCTCGACCTATCAGTATTGTTCTAGCTCCTCCAGAGACTGAGCATCAATCTGAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.54

Weight (kDa)

6.57

Isoelectric Point (pI)

80.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 31, 180
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 249
AgsI TTSAA 3 cut(s) 65, 76, 161
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 45, 276, 284, 308
AluI AGCT 4 cut(s) 45, 276, 284, 308
Alw26I GTCTC 1 cut(s) 311
AlwNI CAGNNNCTG 2 cut(s) 262, 320
ApeKI GCWGC 2 cut(s) 33, 42
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 276
AspLEI GCGC 1 cut(s) 179
AsuII TTCGAA 1 cut(s) 218
BbvI GCAGC 2 cut(s) 45, 54
BccI CCATC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 180
BisI GCNGC 3 cut(s) 34, 43, 180
BlsI GCNGC 3 cut(s) 35, 44, 181
Bme1390I CCNGG 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 334
BpmI CTGGAG 2 cut(s) 157, 297
Bpu14I TTCGAA 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 312
BseRI GAGGAG 2 cut(s) 193, 300
BseXI GCAGC 2 cut(s) 45, 54
BsmAI GTCTC 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 218
BspACI CCGC 2 cut(s) 31, 180
BspCNI CTCAG 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 321
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 311
BstMWI GCNNNNNNNGC 2 cut(s) 39, 42
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 45, 54
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 191
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 2 cut(s) 262, 320
CfoI GCGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 248
CviJI RGCY 7 cut(s) 15, 45, 223, 260, 276, 284, 308
CviKI_1 RGCY 7 cut(s) 15, 45, 223, 260, 276, 284, 308
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 250
FaiI YATR 3 cut(s) 85, 87, 340
FauI CCCGC 1 cut(s) 38
Fnu4HI GCNGC 3 cut(s) 34, 43, 180
Fsp4HI GCNGC 3 cut(s) 34, 43, 180
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 178
GluI GCNGC 3 cut(s) 34, 43, 180
GsuI CTGGAG 2 cut(s) 157, 297
HaeII RGCGCY 1 cut(s) 180
HhaI GCGC 1 cut(s) 179
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 3 cut(s) 115, 264, 334
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 42
HpyF3I CTNAG 1 cut(s) 321
HspAI GCGC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 8 cut(s) 72, 187, 237, 242, 251, 264, 294, 327
Lsp1109I GCAGC 2 cut(s) 45, 54
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 305
MboII GAAGA 1 cut(s) 142
MluCI AATT 2 cut(s) 71, 120
MnlI CCTC 5 cut(s) 32, 211, 214, 234, 321
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 2 cut(s) 84, 130
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 39, 42
NspV TTCGAA 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 35, 44, 181
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PsrI GAACNNNNNNTAC 1 cut(s) 34
PstNI CAGNNNCTG 2 cut(s) 262, 320
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
RseI CAYNNNNRTG 2 cut(s) 84, 130
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 34, 43, 180
ScrFI CCNGG 1 cut(s) 252
SetI ASST 6 cut(s) 24, 47, 278, 286, 292, 310
SfaNI GCATC 1 cut(s) 334
SfuI TTCGAA 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 84, 130
Sse9I AATT 2 cut(s) 71, 120
SsiI CCGC 2 cut(s) 31, 180
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 250
TaqI TCGA 4 cut(s) 167, 218, 270, 286
TasI AATT 2 cut(s) 71, 120
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 189, 198
TseI GCWGC 2 cut(s) 33, 42
TspGWI ACGGA 2 cut(s) 14, 143
TspRI CASTG 2 cut(s) 189, 198
XapI RAATTY 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.