Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Forward (+)

5896604 .. 5899219

Gene Structure 2616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1073000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGAGATGACCGGTTGGCATCCACGCACTCTACAGTGTTCATAGAGTCAGAGGATTTGCATGGCCAAAGGACTGAAATCGAAGGATATGATTTCAATCAGGGAGTAGACTACCCTCGCCTCGTTAGCTCCATGGTCTCCACCGGCTTCCAAGCCTCCAATCTCGGAGATGCCATTCAAATCGTCAACCAAATGCTAGATTGGAGTCTAGCAGATGAGGCTATAGATGAAGATTGCAATGAGGAGGAGAGGGATTTGAAATACAGAAAGTCGGTGAAATGCAAGGTGTTTCTAGGTTTTACTTCGAATTTGGTTTCGTCTGGGATTAGAGATACAATTCGGTACTTGGTGGAGCACCATATGGTGGATGTTGTGGTTTCAACTGCTGGGGGTATAGAGGAGGATCTAGTTAAATGCCTTGCGCCCACTTACAGAGGTGATTTCTCTCTACCGGGAGCACTTTTACGGTCAAAAGGCTTGAATCGTATTGGTAATTTGCTTGTTCCTAATGACAACTACTGCAAATTTGAGGATTGGATCATACCAATTTTCGACCAGATGTTGAAGGACCAAACTGAGCAGAACTTATTGTGGACTCCGTCTAAATTGATTTCACGCTTGGGGAAGGAAATAAATGATCGACGTTCATACCTTTATTGGGCATACAAGAACAATATCCCAGTTTATTGTCCAGGTTTAACGGATGGCTCACTGGGAGACATGTTGTACTTTCATTCTTTCCGCAGCCCAGGCCTGATCATCGACTTAGTGCAAGATATTAGGGCCATGAATGATGAAGCTGTCCATGCAAGCCCAAGGAAGACTGGAATGATCATTCTCGGAGGGGGCATGCCCAAACATCACATTTCCAATGCCAATATGTTTCGTAATGGTGCGGATTATGCTGTCTTCATCAATACTGCGCAAGAGTTTGATGGGAGTGATTCTGGAGCGCGTCCTGACGAGGCTGTATCATGGGGAAAAATACGGGATTCTGCCAAAACTGTCAAGGTGCATTGCGATGCAACAATTGCTTTCCCTCTGCTGGTTGCTGAAACATTTGCGAAGAACGCTGTCCAGACTACGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

364

Amino Acids

40.52

Weight (kDa)

5.1

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	41 - 352	1.4e-123	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	924
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	955
AciI	CCGC	2 cut(s)	742, 896
AclWI	GGATC	2 cut(s)	411, 545
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	307, 524
AfaI	GTAC	2 cut(s)	344, 728
AfiI	CCNNNNNNNGG	3 cut(s)	364, 658, 1045
AflIII	ACRYGT	1 cut(s)	720
AgeI	ACCGGT	1 cut(s)	12
AgsI	TTSAA	6 cut(s)	97, 179, 259, 381, 481, 565
AjnI	CCWGG	2 cut(s)	691, 748
AluBI	AGCT	2 cut(s)	129, 800
AluI	AGCT	2 cut(s)	129, 800
Alw21I	GWGCWC	2 cut(s)	357, 460
Alw26I	GTCTC	2 cut(s)	142, 711
AlwI	GGATC	2 cut(s)	411, 545
AoxI	GGCC	3 cut(s)	64, 751, 783
ApeKI	GCWGC	1 cut(s)	744
ApoI	RAATTY	2 cut(s)	307, 524
AsiGI	ACCGGT	1 cut(s)	12
AspLEI	GCGC	3 cut(s)	424, 925, 955
AspS9I	GGNCC	2 cut(s)	568, 783
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	286, 449
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	827, 901
Bbv12I	GWGCWC	2 cut(s)	357, 460
BbvI	GCAGC	1 cut(s)	756
BccI	CCATC	2 cut(s)	698, 929
BciT130I	CCWGG	2 cut(s)	693, 750
BclI	TGATCA	2 cut(s)	756, 831
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	142, 711
BfaI	CTAG	4 cut(s)	197, 209, 293, 407
BfmI	CTRYAG	2 cut(s)	33, 222
BisI	GCNGC	1 cut(s)	745
BlsI	GCNGC	1 cut(s)	746
Bme1390I	CCNGG	3 cut(s)	453, 693, 750
Bme18I	GGWCC	1 cut(s)	568
BmgT120I	GGNCC	2 cut(s)	568, 783
BmrFI	CCNGG	3 cut(s)	453, 693, 750
BmrI	ACTGGG	2 cut(s)	674, 722
BmsI	GCATC	3 cut(s)	29, 160, 1012
BmuI	ACTGGG	2 cut(s)	674, 722
BpiI	GAAGAC	2 cut(s)	827, 901
BpmI	CTGGAG	1 cut(s)	969
Bpu14I	TTCGAA	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	453
BsaBI	GATNNNNATC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	132, 748, 815
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 658, 1045
Bse118I	RCCGGY	2 cut(s)	12, 143
Bse1I	ACTGG	3 cut(s)	680, 717, 829
Bse3DI	GCAATG	2 cut(s)	244, 1015
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	693, 750
BseDI	CCNNGG	3 cut(s)	132, 748, 815
BseGI	GGATG	3 cut(s)	20, 373, 709
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	3 cut(s)	364, 658, 1045
BseMI	GCAATG	2 cut(s)	244, 1015
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	3 cut(s)	680, 717, 829
BseRI	GAGGAG	3 cut(s)	257, 260, 413
BseXI	GCAGC	1 cut(s)	756
BseYI	CCCAGC	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	955
BshFI	GGCC	3 cut(s)	66, 753, 785
BshTI	ACCGGT	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	357, 460
BsiSI	CCGG	3 cut(s)	13, 144, 452
BslI	CCNNNNNNNGG	3 cut(s)	364, 658, 1045
BsmAI	GTCTC	2 cut(s)	142, 711
BsnI	GGCC	3 cut(s)	66, 753, 785
Bso31I	GGTCTC	1 cut(s)	142
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	357, 460
Bsp143I	GATC	5 cut(s)	403, 537, 637, 756, 831
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	2 cut(s)	742, 896
BspANI	GGCC	3 cut(s)	66, 753, 785
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	955
BspPI	GGATC	2 cut(s)	411, 545
BspT104I	TTCGAA	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	244, 1015
BsrFI	RCCGGY	2 cut(s)	12, 143
BsrI	ACTGG	3 cut(s)	680, 717, 829
BssAI	RCCGGY	2 cut(s)	12, 143
BssECI	CCNNGG	3 cut(s)	132, 748, 815
BssMI	GATC	5 cut(s)	403, 537, 637, 756, 831
BssT1I	CCWWGG	2 cut(s)	132, 815
Bst2UI	CCWGG	2 cut(s)	693, 750
Bst4CI	ACNGT	3 cut(s)	37, 468, 1006
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	811, 851
BstDEI	CTNAG	2 cut(s)	576, 766
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	20, 373, 709
BstFNI	CGCG	1 cut(s)	955
BstHHI	GCGC	3 cut(s)	424, 925, 955
BstKTI	GATC	5 cut(s)	406, 540, 640, 759, 834
BstMAI	GTCTC	2 cut(s)	142, 711
BstMBI	GATC	5 cut(s)	403, 537, 637, 756, 831
BstMWI	GCNNNNNNNGC	7 cut(s)	126, 218, 750, 806, 902, 1031, 1070
BstNI	CCWGG	2 cut(s)	693, 750
BstNSI	RCATGY	2 cut(s)	724, 853
BstSCI	CCNGG	3 cut(s)	451, 691, 748
BstSFI	CTRYAG	2 cut(s)	33, 222
BstUI	CGCG	1 cut(s)	955
BstV1I	GCAGC	1 cut(s)	756
BstV2I	GAAGAC	2 cut(s)	827, 901
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	66, 753, 785
BtgI	CCRYGG	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	1035
BtsCI	GGATG	3 cut(s)	20, 373, 709
BtsIMutI	CAGTG	2 cut(s)	42, 710
Cac8I	GCNNGC	2 cut(s)	811, 851
CfoI	GCGC	3 cut(s)	424, 925, 955
Cfr10I	RCCGGY	2 cut(s)	12, 143
Cfr13I	GGNCC	2 cut(s)	568, 783
CseI	GACGC	1 cut(s)	944
Csp6I	GTAC	2 cut(s)	343, 727
CspAI	ACCGGT	1 cut(s)	12
CviAII	CATG	7 cut(s)	62, 133, 721, 787, 806, 850, 975
CviQI	GTAC	2 cut(s)	343, 727
DdeI	CTNAG	2 cut(s)	576, 766
DpnI	GATC	5 cut(s)	405, 539, 639, 758, 833
DpnII	GATC	5 cut(s)	403, 537, 637, 756, 831
EaeI	YGGCCR	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	132, 815
Eco147I	AGGCCT	1 cut(s)	753
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	691, 748
EcoT14I	CCWWGG	2 cut(s)	132, 815
ErhI	CCWWGG	2 cut(s)	132, 815
FaeI	CATG	7 cut(s)	65, 136, 724, 790, 809, 853, 978
FatI	CATG	7 cut(s)	61, 132, 720, 786, 805, 849, 974
FauNDI	CATATG	1 cut(s)	360
FbaI	TGATCA	2 cut(s)	756, 831
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	745
FokI	GGATG	3 cut(s)	7, 380, 716
Fsp4HI	GCNGC	1 cut(s)	745
FspBI	CTAG	4 cut(s)	197, 209, 293, 407
FspI	TGCGCA	1 cut(s)	924
GlaI	GCGC	3 cut(s)	423, 924, 954
GluI	GCNGC	1 cut(s)	745
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	969
HaeIII	GGCC	3 cut(s)	66, 753, 785
HapII	CCGG	3 cut(s)	13, 144, 452
HgaI	GACGC	1 cut(s)	944
HhaI	GCGC	3 cut(s)	424, 925, 955
Hin1II	CATG	7 cut(s)	65, 136, 724, 790, 809, 853, 978
Hin6I	GCGC	3 cut(s)	422, 923, 953
HinP1I	GCGC	3 cut(s)	422, 923, 953
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	6 cut(s)	47, 205, 481, 595, 944, 992
HpaII	CCGG	3 cut(s)	13, 144, 452
HphI	GGTGA	2 cut(s)	286, 449
Hpy166II	GTNNAC	3 cut(s)	109, 187, 594
Hpy188I	TCNGA	3 cut(s)	52, 167, 842
Hpy188III	TCNNGA	3 cut(s)	948, 959, 1078
Hpy8I	GTNNAC	3 cut(s)	109, 187, 594
Hpy99I	CGWCG	1 cut(s)	645
HpyAV	CCTTC	3 cut(s)	77, 559, 619
HpyCH4III	ACNGT	3 cut(s)	37, 468, 1006
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	8 cut(s)	61, 237, 282, 522, 772, 809, 1015, 1025
HpyF10VI	GCNNNNNNNGC	7 cut(s)	126, 218, 750, 806, 902, 1031, 1070
HpyF3I	CTNAG	2 cut(s)	576, 766
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	7 cut(s)	65, 136, 724, 790, 809, 853, 978
HspAI	GCGC	3 cut(s)	422, 923, 953
Ksp22I	TGATCA	2 cut(s)	756, 831
Kzo9I	GATC	5 cut(s)	403, 537, 637, 756, 831
LmnI	GCTCC	4 cut(s)	134, 352, 455, 950
Lsp1109I	GCAGC	1 cut(s)	756
LweI	GCATC	3 cut(s)	29, 160, 1012
MaeI	CTAG	4 cut(s)	197, 209, 293, 407
MaeII	ACGT	1 cut(s)	643
MalI	GATC	5 cut(s)	405, 539, 639, 758, 833
MboI	GATC	5 cut(s)	403, 537, 637, 756, 831
MboII	GAAGA	4 cut(s)	242, 832, 901, 1078
MfeI	CAATTG	1 cut(s)	1029
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	357, 460
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	7 cut(s)	307, 336, 493, 524, 546, 605, 1029
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	3 cut(s)	56, 214, 589
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	411, 698
MslI	CAYNNNNRTG	1 cut(s)	1020
Msp20I	TGGCCA	1 cut(s)	66
MspI	CCGG	3 cut(s)	13, 144, 452
MspR9I	CCNGG	3 cut(s)	453, 693, 750
MunI	CAATTG	1 cut(s)	1029
MvaI	CCWGG	2 cut(s)	693, 750
MvnI	CGCG	1 cut(s)	955
MwoI	GCNNNNNNNGC	7 cut(s)	126, 218, 750, 806, 902, 1031, 1070
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	5 cut(s)	403, 537, 637, 756, 831
NlaIII	CATG	7 cut(s)	65, 136, 724, 790, 809, 853, 978
NsbI	TGCGCA	1 cut(s)	924
NspI	RCATGY	2 cut(s)	724, 853
NspV	TTCGAA	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	853
PceI	AGGCCT	1 cut(s)	753
PciI	ACATGT	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	481, 944, 992
PflFI	GACNNNGTC	1 cut(s)	598
PflMI	CCANNNNNTGG	1 cut(s)	364
PinAI	ACCGGT	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	746
PleI	GAGTC	3 cut(s)	55, 213, 589
PpsI	GAGTC	3 cut(s)	55, 213, 589
PscI	ACATGT	1 cut(s)	720
Psp6I	CCWGG	2 cut(s)	691, 748
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	2 cut(s)	691, 748
PspPI	GGNCC	2 cut(s)	568, 783
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	598
RsaI	GTAC	2 cut(s)	344, 728
RsaNI	GTAC	2 cut(s)	343, 727
RseI	CAYNNNNRTG	1 cut(s)	1020
SaqAI	TTAA	2 cut(s)	411, 698
SatI	GCNGC	1 cut(s)	745
Sau3AI	GATC	5 cut(s)	403, 537, 637, 756, 831
Sau96I	GGNCC	2 cut(s)	568, 783
SchI	GAGTC	3 cut(s)	56, 214, 589
ScrFI	CCNGG	3 cut(s)	453, 693, 750
SduI	GDGCHC	2 cut(s)	357, 460
SetI	ASST	9 cut(s)	131, 288, 298, 439, 646, 654, 697, 802, 1014
SfaNI	GCATC	3 cut(s)	29, 160, 1012
SfcI	CTRYAG	2 cut(s)	33, 222
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SphI	GCATGC	1 cut(s)	853
Sse9I	AATT	7 cut(s)	307, 336, 493, 524, 546, 605, 1029
SseBI	AGGCCT	1 cut(s)	753
SsiI	CCGC	2 cut(s)	742, 896
SspMI	CTAG	4 cut(s)	197, 209, 293, 407
StuI	AGGCCT	1 cut(s)	753
StyD4I	CCNGG	3 cut(s)	451, 691, 748
StyI	CCWWGG	2 cut(s)	132, 815
TaaI	ACNGT	3 cut(s)	37, 468, 1006
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	5 cut(s)	81, 305, 552, 640, 762
TasI	AATT	7 cut(s)	307, 336, 493, 524, 546, 605, 1029
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	3 cut(s)	481, 944, 992
Tru1I	TTAA	2 cut(s)	411, 698
Tru9I	TTAA	2 cut(s)	411, 698
TscAI	CASTG	2 cut(s)	42, 717
TseI	GCWGC	1 cut(s)	744
TspDTI	ATGAA	7 cut(s)	31, 243, 636, 722, 803, 810, 901
TspGWI	ACGGA	2 cut(s)	588, 716
TspRI	CASTG	2 cut(s)	42, 717
Tth111I	GACNNNGTC	1 cut(s)	598
Van91I	CCANNNNNTGG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	2 cut(s)	307, 524
XceI	RCATGY	2 cut(s)	724, 853
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	4 cut(s)	197, 209, 293, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.