Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Reverse (-)

11464588 .. 11464927

Gene Structure 340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCGCAATGGTGCGGATTATGCTGTGTTCATTAATACTTCACAAGAGTATGATGGTAGTGATTTTGGAGCACGTCCTGATGTCATGGGGAAAATACGGGGTTTTGCTAACACTGTTAAGGTGCACTGTGATGCAACAATTGCTTTCCCTTTTCTGGTCGCTGAGACATTTGCAAAGAAAGTTAGCAAGACTACGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

66

Amino Acids

7.21

Weight (kDa)

7.89

Isoelectric Point (pI)

19.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	1 - 56	1.4e-14	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	74
Alw21I	GWGCWC	2 cut(s)	73, 126
Alw26I	GTCTC	1 cut(s)	158
Alw44I	GTGCAC	1 cut(s)	122
ApaLI	GTGCAC	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	126
Bbv12I	GWGCWC	2 cut(s)	73, 126
BccI	CCATC	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	126
BsiHKAI	GWGCWC	2 cut(s)	73, 126
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	73, 126
BspACI	CCGC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	115, 128
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 140
BstSLI	GKGCMC	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	111, 124
CfoI	GCGC	1 cut(s)	6
CviAII	CATG	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	162
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	21, 51, 86
FatI	CATG	1 cut(s)	84
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	115, 128
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	124, 134, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 140
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	2 cut(s)	90, 140
LweI	GCATC	1 cut(s)	121
MaeII	ACGT	1 cut(s)	73
MfeI	CAATTG	1 cut(s)	138
MhlI	GDGCHC	2 cut(s)	73, 126
MluCI	AATT	1 cut(s)	138
MseI	TTAA	2 cut(s)	33, 117
MslI	CAYNNNNRTG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	20, 140
NlaIII	CATG	1 cut(s)	88
NsbI	TGCGCA	1 cut(s)	5
PshBI	ATTAAT	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	33, 117
SduI	GDGCHC	2 cut(s)	73, 126
SetI	ASST	3 cut(s)	76, 123, 200
SfaNI	GCATC	1 cut(s)	121
SgeI	CNNG	6 cut(s)	56, 84, 89, 97, 110, 167
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	115, 128
TaiI	ACGT	1 cut(s)	76
TasI	AATT	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	33, 117
Tru9I	TTAA	2 cut(s)	33, 117
TscAI	CASTG	2 cut(s)	118, 131
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	118, 131
VneI	GTGCAC	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.