Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Forward (+)

3863851 .. 3864323

Gene Structure 473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGATCATTCTCGGAGGGGGCATGCCCAAACATCACATTTCCAATGCCAATATGTTTCGTAATGGTGCGGATTATGGTGTCTTCATCAATACTGCGCAAGAGTTTGATGGGAGTGATTCTGGAGCGCGTCCTGACGAGGCTGTATCATGGGGAAAAATACGGGATTCTGCCAAAACTGTCAAGGTGCATTGCGATGCAACAATTGCTTTCCCTCTGCTGGTTGCTGAAACATTTGCGAAGAACGCTGTCCAGACTACGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

88

Amino Acids

9.31

Weight (kDa)

6.24

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DS	PF01916	1 - 77	1.3e-36	Deoxyhypusine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	96
AccII	CGCG	1 cut(s)	127
AciI	CCGC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	97, 127
BbsI	GAAGAC	1 cut(s)	73
BccI	CCATC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	3
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	187
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	23
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	97, 127
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 242
BstNSI	RCATGY	1 cut(s)	25
BstUI	CGCG	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	73
BtgZI	GCGATG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	2 cut(s)	97, 127
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	22, 147
CviJI	RGCY	1 cut(s)	140
CviKI_1	RGCY	1 cut(s)	140
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
FaeI	CATG	2 cut(s)	25, 150
FaiI	YATR	4 cut(s)	23, 53, 75, 148
FatI	CATG	2 cut(s)	21, 146
FbaI	TGATCA	1 cut(s)	3
FspI	TGCGCA	1 cut(s)	96
GlaI	GCGC	2 cut(s)	96, 126
GsuI	CTGGAG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	2 cut(s)	97, 127
Hin1II	CATG	2 cut(s)	25, 150
Hin6I	GCGC	2 cut(s)	95, 125
HinP1I	GCGC	2 cut(s)	95, 125
HinfI	GANTC	2 cut(s)	116, 164
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	3 cut(s)	120, 131, 250
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	187, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 242
Hsp92II	CATG	2 cut(s)	25, 150
HspAI	GCGC	2 cut(s)	95, 125
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	3 cut(s)	105, 144, 203
LweI	GCATC	1 cut(s)	184
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	73, 250
MfeI	CAATTG	1 cut(s)	201
MluCI	AATT	1 cut(s)	201
MnlI	CCTC	3 cut(s)	8, 130, 222
MslI	CAYNNNNRTG	1 cut(s)	192
MunI	CAATTG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	203, 242
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	25, 150
NsbI	TGCGCA	1 cut(s)	96
NspI	RCATGY	1 cut(s)	25
PaeI	GCATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	116, 164
RseI	CAYNNNNRTG	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	2 cut(s)	186, 263
SfaNI	GCATC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	192
SphI	GCATGC	1 cut(s)	25
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	178
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	116, 164
TspDTI	ATGAA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.