Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378545.1

Orthogroup ID

OG0002811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1156

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378545.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

aggtacttggtggagcaccatgcggtggatgtggtggtcacaactgctggtggcattgaggaggatcttatcaaatgccttgcgccgacttataagggtgatttcgctctagcaggggcgtatttgaggtccaagggattgaatcgtatcggtaatttactggttcctaatgataactattgcaaatttgaggattggatcttaccgattttcgatcagatgttgaaggaacagaatgaacagaatgtgctgtggacgccatctaaattgattgcacgcttggggaaggaaataaatgatgaaagatcgtatctttactgggcatacaagaacaatgtcccagtttactgtccatccataacagatggctcattgggagacatgttgtacttccattctttccgcagcccaggtctggttgttgacatagtgcaagatattagggccatgaatggtgaagctgttcatgcaggtctgaggaagactggaatgatcatcctcggaggaggcctgcccaaacatcacatttgcaatgctaatatgatgcgcaatggtgctgattatgctgtgtttattaacactgcacaggagtatgatggtagtgattctggagctcgtcctgatgaggctgtctcctgggggaaaatacggggttctgccaaaactgttaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

224

Amino Acids

24.9

Weight (kDa)

6.33

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05920 AT5G05920 AT5G05920
fragaria_vesca	FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830 FvH4_1g06830
malus_domestica	MD02G1073000.v1.1 MD15G1202800.v1.1
prunus_persica	Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1 Prupe.7G214500_v2.0.a1
pyrus_communis	pycom02g05720 pycom02g05740 pycom15g18010
rosa_chinensis	RchiOBHm_Chr2g0092611 RchiOBHm_Chr6g0296851
rosa_laevigata	RLG00000016206 RLG00000016328
rosa_multiflora	Rmu_co8378545.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043340 Rroxscaffold_2G00148930 Rroxscaffold_7G00171070
rosa_rugosa	Rorug02G0028100 Rorug02G0028100 Rorug02G0028200 Rorug02G0028200
rosa_samantha	Rh2AG073900 Rh2AG333600 Rh2BG075000 Rh2CG076600 Rh2DG073000 Rh3BG296900 Rh3CG349900 Rh5BG226300 Rh6CG391200 Rh6DG378400
rosa_wichuraiana	Rw2G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
Acc16I	TGCGCA	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	2 cut(s)	23, 403
AclWI	GGATC	2 cut(s)	72, 206
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	2 cut(s)	5, 389
AfiI	CCNNNNNNNGG	2 cut(s)	25, 415
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	142, 226
AjnI	CCWGG	2 cut(s)	409, 635
AluBI	AGCT	2 cut(s)	461, 614
AluI	AGCT	2 cut(s)	461, 614
Alw21I	GWGCWC	2 cut(s)	18, 616
Alw26I	GTCTC	2 cut(s)	372, 637
AlwI	GGATC	2 cut(s)	72, 206
AoxI	GGCC	2 cut(s)	444, 508
ApeKI	GCWGC	1 cut(s)	405
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	2 cut(s)	85, 549
AspS9I	GGNCC	2 cut(s)	129, 444
AsuHPI	GGTGA	2 cut(s)	110, 467
AvaII	GGWCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	2 cut(s)	18, 616
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	4 cut(s)	268, 359, 361, 590
BciT130I	CCWGG	2 cut(s)	411, 637
BclI	TGATCA	1 cut(s)	492
BcoDI	GTCTC	2 cut(s)	372, 637
BfaI	CTAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	461
BisI	GCNGC	1 cut(s)	406
BlsI	GCNGC	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	411, 637
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	129, 444
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	411, 637
BmrI	ACTGGG	2 cut(s)	328, 335
BmsI	GCATC	1 cut(s)	534
BmuI	ACTGGG	2 cut(s)	328, 335
BpiI	GAAGAC	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	4 cut(s)	132, 409, 499, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 415
Bse1I	ACTGG	4 cut(s)	165, 323, 341, 490
Bse3DI	GCAATG	2 cut(s)	538, 556
BseBI	CCWGG	2 cut(s)	411, 637
BseDI	CCNNGG	4 cut(s)	132, 409, 499, 636
BseGI	GGATG	3 cut(s)	34, 353, 495
BseLI	CCNNNNNNNGG	2 cut(s)	25, 415
BseMI	GCAATG	2 cut(s)	538, 556
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	4 cut(s)	165, 323, 341, 490
BseRI	GAGGAG	2 cut(s)	74, 519
BseXI	GCAGC	1 cut(s)	417
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	446, 510
BsiHKAI	GWGCWC	2 cut(s)	18, 616
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	25, 415
BsmAI	GTCTC	2 cut(s)	372, 637
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	446, 510
Bsp1286I	GDGCHC	2 cut(s)	18, 616
Bsp143I	GATC	5 cut(s)	64, 198, 214, 305, 492
BspACI	CCGC	2 cut(s)	23, 403
BspANI	GGCC	2 cut(s)	446, 510
BspCNI	CTCAG	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	72, 206
BsrDI	GCAATG	2 cut(s)	538, 556
BsrI	ACTGG	4 cut(s)	165, 323, 341, 490
BssECI	CCNNGG	4 cut(s)	132, 409, 499, 636
BssMI	GATC	5 cut(s)	64, 198, 214, 305, 492
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	411, 637
Bst4CI	ACNGT	2 cut(s)	350, 667
BstACI	GRCGYC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	277, 512
BstDEI	CTNAG	1 cut(s)	476
BstF5I	GGATG	3 cut(s)	34, 353, 495
BstHHI	GCGC	2 cut(s)	85, 549
BstKTI	GATC	5 cut(s)	67, 201, 217, 308, 495
BstMAI	GTCTC	2 cut(s)	372, 637
BstMBI	GATC	5 cut(s)	64, 198, 214, 305, 492
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 467, 563
BstNI	CCWGG	2 cut(s)	411, 637
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	409, 635
BstV1I	GCAGC	1 cut(s)	417
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	64, 198
BstYI	RGATCY	2 cut(s)	64, 198
BsuRI	GGCC	2 cut(s)	446, 510
BtsCI	GGATG	3 cut(s)	34, 353, 495
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	579
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	277, 512
CfoI	GCGC	2 cut(s)	85, 549
Cfr13I	GGNCC	2 cut(s)	129, 444
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	4, 388
CviAII	CATG	4 cut(s)	20, 382, 448, 467
CviJI	RGCY	7 cut(s)	369, 408, 446, 461, 510, 614, 629
CviKI_1	RGCY	7 cut(s)	369, 408, 446, 461, 510, 614, 629
CviQI	GTAC	2 cut(s)	4, 388
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	5 cut(s)	66, 200, 216, 307, 494
DpnII	GATC	5 cut(s)	64, 198, 214, 305, 492
Ecl136II	GAGCTC	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	409, 635
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	4 cut(s)	23, 385, 451, 470
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	4 cut(s)	19, 381, 447, 466
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	406
FokI	GGATG	3 cut(s)	41, 340, 482
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	1 cut(s)	406
FspBI	CTAG	1 cut(s)	110
FspI	TGCGCA	1 cut(s)	548
GlaI	GCGC	2 cut(s)	84, 548
GluI	GCNGC	1 cut(s)	406
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	446, 510
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	2 cut(s)	85, 549
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	4 cut(s)	23, 385, 451, 470
Hin6I	GCGC	2 cut(s)	83, 547
HinP1I	GCGC	2 cut(s)	83, 547
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	142, 605
HphI	GGTGA	2 cut(s)	110, 467
Hpy166II	GTNNAC	3 cut(s)	255, 346, 424
Hpy188I	TCNGA	3 cut(s)	219, 477, 503
Hpy188III	TCNNGA	2 cut(s)	609, 620
Hpy8I	GTNNAC	3 cut(s)	255, 346, 424
HpyAV	CCTTC	2 cut(s)	220, 280
HpyCH4III	ACNGT	2 cut(s)	350, 667
HpyCH4V	TGCA	6 cut(s)	183, 275, 433, 470, 531, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 467, 563
HpyF3I	CTNAG	1 cut(s)	476
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	4 cut(s)	23, 385, 451, 470
HspAI	GCGC	2 cut(s)	83, 547
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	5 cut(s)	64, 198, 214, 305, 492
LmnI	GCTCC	2 cut(s)	13, 611
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	5 cut(s)	66, 200, 216, 307, 494
MboI	GATC	5 cut(s)	64, 198, 214, 305, 492
MboII	GAAGA	1 cut(s)	493
MflI	RGATCY	2 cut(s)	64, 198
MhlI	GDGCHC	2 cut(s)	18, 616
MluCI	AATT	3 cut(s)	154, 185, 266
MnlI	CCTC	9 cut(s)	52, 55, 120, 184, 471, 497, 500, 509, 619
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	2 cut(s)	576, 669
MspR9I	CCNGG	2 cut(s)	411, 637
MvaI	CCWGG	2 cut(s)	411, 637
MwoI	GCNNNNNNNGC	3 cut(s)	256, 467, 563
NdeII	GATC	5 cut(s)	64, 198, 214, 305, 492
NlaIII	CATG	4 cut(s)	23, 385, 451, 470
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	37
NsbI	TGCGCA	1 cut(s)	548
NspI	RCATGY	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	510
PciI	ACATGT	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	142, 605
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	407
PscI	ACATGT	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	409, 635
PspGI	CCWGG	2 cut(s)	409, 635
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	129, 444
PsuI	RGATCY	2 cut(s)	64, 198
RsaI	GTAC	2 cut(s)	5, 389
RsaNI	GTAC	2 cut(s)	4, 388
SacI	GAGCTC	1 cut(s)	616
SaqAI	TTAA	2 cut(s)	576, 669
SatI	GCNGC	1 cut(s)	406
Sau3AI	GATC	5 cut(s)	64, 198, 214, 305, 492
Sau96I	GGNCC	2 cut(s)	129, 444
ScrFI	CCNGG	2 cut(s)	411, 637
SduI	GDGCHC	2 cut(s)	18, 616
SetI	ASST	5 cut(s)	131, 415, 463, 475, 616
SfaNI	GCATC	1 cut(s)	534
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	3 cut(s)	154, 185, 266
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	2 cut(s)	23, 403
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	616
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	409, 635
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	350, 667
TaqI	TCGA	1 cut(s)	213
TasI	AATT	3 cut(s)	154, 185, 266
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	142, 605
Tru1I	TTAA	2 cut(s)	576, 669
Tru9I	TTAA	2 cut(s)	576, 669
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	252, 315, 455, 464
TspRI	CASTG	1 cut(s)	586
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.