Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

2103115 .. 2106004

Gene Structure 2890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGATGGATAACATCAACTTTGAATTCTCAAACGCTTCACAAGGAAGCCGGCTACAGTTGCAGCAACAACCGCCCCAGCCGTTTAATTTACAAGACTTGAATATGATTCAATACAATCAACCATCATCTCCTTGGACTACGGAGACCTTCTCTGGTCTAACTCCGTACGATTGCACAGCCAATCAATCTTTTCCCGTACAATGTTCATCTTCAAAACCCTACCCTTCCTCGTTTCATCCGTACCATCATCAATCTTCTGATTCTCCATCATTAGACCAATCTGTATCGATGATTCCTATGCAGCCTCTTCCGGATCAATATATGAAGCCATTATATCAAAGATCTTGCTCGAACGATTTTGCCGCAACAAATGCTTCATCAGCCTCTTACTCGCTTTCTTTTGAAGCAAGTCATGATCCACAAGAACTATGCAGAAGGACCTATAGTAATTCTAATGTAACACATCTTAATTTCACATCATCACAACATCAACCTAAACAGAGTCATCCAAGATTTTCTTCTCCTCCTTCATTCTCAATCCATGGAGGGTCTATGGCTCCTAACTGTGTGAACAAGACACGGATAAGATGGACTCAAGATCTTCATGAGAAGTTTGTGGAGTGCGTTAATCGTCTTGGTGGCGCTGATAAGGCGACGCCCAAGGCGATATTGAAGCGGATGGATTCTGATGGACTCACAATATTTCACGTTAAAAGCCACTTACAGAAGTATAGAATTGCGAAATACATGCCTGAGTCTCAAGAAGGCAAGTTTGAGAAAAGAGCTTGTGCAAAAGAGCTGTCTCAGCTTGACACAAGAACTGGAGTGCAAATTAAAGAGGCACTTCAGCTTCAACTAGATGTTCAGAGGCATCTTCATGAACAACTAGAGATTCAACGAAACCTACAACTAAGAATCGAAGAACAAGGGAAACAACTGAAAATGATGATGGAACAACAACAAAAAAACAAAGAGAGTCTTCTGAAGAAGCTACCAGACGCTGAAGCATCATTGTCTCTTCTCGATCCCCATATTCACTCTCCTCCTTCGCCTTTCTTGGTACACGACGCTGAAGCCCTGATGCTAACAAGTTATGAAGACACTCAACTCCAGTCCACCAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

375

Amino Acids

42.7

Weight (kDa)

6.97

Isoelectric Point (pI)

72.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	196 - 245	2.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	3 cut(s)	71, 363, 676
AclWI	GGATC	3 cut(s)	321, 410, 1019
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	4 cut(s)	830, 1004, 1023, 1092
AcyI	GRCGYC	1 cut(s)	656
AfaI	GTAC	4 cut(s)	167, 198, 242, 1062
AgsI	TTSAA	8 cut(s)	23, 100, 110, 213, 404, 673, 854, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	5 cut(s)	785, 799, 808, 850, 991
AluI	AGCT	5 cut(s)	785, 799, 808, 850, 991
Alw26I	GTCTC	4 cut(s)	137, 762, 807, 1020
AlwI	GGATC	3 cut(s)	321, 410, 1019
AlwNI	CAGNNNCTG	1 cut(s)	1001
Aor13HI	TCCGGA	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	61, 301
ApoI	RAATTY	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	785, 817
AspLEI	GCGC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	438
BbsI	GAAGAC	2 cut(s)	971, 1104
BbvI	GCAGC	2 cut(s)	73, 313
BccI	CCATC	7 cut(s)	130, 252, 274, 582, 673, 683, 943
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	730, 764
BcoDI	GTCTC	4 cut(s)	137, 762, 807, 1020
BfaI	CTAG	2 cut(s)	857, 887
BfmI	CTRYAG	2 cut(s)	53, 442
BfoI	RGCGCY	1 cut(s)	645
BglII	AGATCT	2 cut(s)	341, 598
BisI	GCNGC	3 cut(s)	62, 302, 363
BlsI	GCNGC	3 cut(s)	63, 303, 364
Bme18I	GGWCC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	558
BmsI	GCATC	3 cut(s)	880, 1016, 1071
BpiI	GAAGAC	2 cut(s)	971, 1104
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpmI	CTGGAG	2 cut(s)	843, 1094
BpuEI	CTTGAG	2 cut(s)	579, 744
Bsa29I	ATCGAT	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	656
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	131, 541, 660
BsaWI	WCCGGW	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	826, 1111
BseAI	TCCGGA	1 cut(s)	310
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	3 cut(s)	131, 541, 660
BseGI	GGATG	3 cut(s)	235, 505, 684
BseMII	CTCAG	2 cut(s)	744, 818
BseNI	ACTGG	2 cut(s)	826, 1111
BseRI	GAGGAG	2 cut(s)	513, 1032
BseXI	GCAGC	2 cut(s)	73, 313
BseYI	CCCAGC	1 cut(s)	75
BshVI	ATCGAT	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	49, 311
BsiWI	CGTACG	1 cut(s)	165
BsmAI	GTCTC	4 cut(s)	137, 762, 807, 1020
Bso31I	GGTCTC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	313, 341, 415, 598, 1024
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	3 cut(s)	71, 363, 676
BspCNI	CTCAG	2 cut(s)	745, 817
BspDI	ATCGAT	1 cut(s)	287
BspEI	TCCGGA	1 cut(s)	310
BspHI	TCATGA	3 cut(s)	412, 604, 877
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	3 cut(s)	321, 410, 1019
BspTNI	GGTCTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	826, 1111
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	3 cut(s)	131, 541, 660
BssMI	GATC	5 cut(s)	313, 341, 415, 598, 1024
BssNI	GRCGYC	1 cut(s)	656
BssT1I	CCWWGG	3 cut(s)	131, 541, 660
Bst4CI	ACNGT	2 cut(s)	57, 566
Bst6I	CTCTTC	2 cut(s)	312, 1023
BstACI	GRCGYC	1 cut(s)	656
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	753, 804, 911
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	3 cut(s)	235, 505, 684
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	5 cut(s)	316, 344, 418, 601, 1027
BstMAI	GTCTC	4 cut(s)	137, 762, 807, 1020
BstMBI	GATC	5 cut(s)	313, 341, 415, 598, 1024
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 70, 371, 380, 650, 805
BstNSI	RCATGY	1 cut(s)	751
BstSFI	CTRYAG	2 cut(s)	53, 442
BstV1I	GCAGC	2 cut(s)	73, 313
BstV2I	GAAGAC	2 cut(s)	971, 1104
BstX2I	RGATCY	2 cut(s)	341, 598
BstYI	RGATCY	2 cut(s)	341, 598
Bsu15I	ATCGAT	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	3 cut(s)	235, 505, 684
Cac8I	GCNNGC	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	1001
CciI	TCATGA	3 cut(s)	412, 604, 877
CfoI	GCGC	1 cut(s)	644
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	438
ClaI	ATCGAT	1 cut(s)	287
CseI	GACGC	3 cut(s)	664, 1007, 1076
Csp6I	GTAC	4 cut(s)	166, 197, 241, 1061
CviAII	CATG	5 cut(s)	413, 542, 605, 748, 878
CviQI	GTAC	4 cut(s)	166, 197, 241, 1061
DdeI	CTNAG	3 cut(s)	753, 804, 911
DpnI	GATC	5 cut(s)	315, 343, 417, 600, 1026
DpnII	GATC	5 cut(s)	313, 341, 415, 598, 1024
Eam1104I	CTCTTC	2 cut(s)	312, 1023
EarI	CTCTTC	2 cut(s)	312, 1023
Eco130I	CCWWGG	3 cut(s)	131, 541, 660
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	438
Eco57I	CTGAAG	4 cut(s)	830, 1004, 1023, 1092
EcoO109I	RGGNCCY	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	23
EcoT14I	CCWWGG	3 cut(s)	131, 541, 660
ErhI	CCWWGG	3 cut(s)	131, 541, 660
FaeI	CATG	5 cut(s)	416, 545, 608, 751, 881
FalI	AAGNNNNNCTT	6 cut(s)	502, 534, 828, 860, 963, 995
FatI	CATG	5 cut(s)	412, 541, 604, 747, 877
Fnu4HI	GCNGC	3 cut(s)	62, 302, 363
FokI	GGATG	3 cut(s)	222, 492, 691
Fsp4HI	GCNGC	3 cut(s)	62, 302, 363
FspBI	CTAG	2 cut(s)	857, 887
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	3 cut(s)	62, 302, 363
GsaI	CCCAGC	1 cut(s)	79
GsuI	CTGGAG	2 cut(s)	843, 1094
HaeII	RGCGCY	1 cut(s)	645
HapII	CCGG	2 cut(s)	49, 311
HgaI	GACGC	3 cut(s)	664, 1007, 1076
HhaI	GCGC	1 cut(s)	644
Hin1I	GRCGYC	1 cut(s)	656
Hin1II	CATG	5 cut(s)	416, 545, 608, 751, 881
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HpaII	CCGG	2 cut(s)	49, 311
Hpy166II	GTNNAC	3 cut(s)	571, 1063, 1116
Hpy188I	TCNGA	4 cut(s)	259, 688, 867, 984
Hpy188III	TCNNGA	7 cut(s)	311, 413, 596, 605, 761, 878, 1022
Hpy8I	GTNNAC	3 cut(s)	571, 1063, 1116
Hpy99I	CGWCG	2 cut(s)	658, 1070
HpyAV	CCTTC	6 cut(s)	157, 234, 429, 537, 758, 1056
HpyCH4III	ACNGT	2 cut(s)	57, 566
HpyCH4IV	ACGT	1 cut(s)	708
HpyCH4V	TGCA	6 cut(s)	61, 174, 301, 432, 791, 829
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 70, 371, 380, 650, 805
HpyF3I	CTNAG	3 cut(s)	753, 804, 911
HpySE526I	ACGT	1 cut(s)	708
Hsp92I	GRCGYC	1 cut(s)	656
Hsp92II	CATG	5 cut(s)	416, 545, 608, 751, 881
HspAI	GCGC	1 cut(s)	642
Kpn2I	TCCGGA	1 cut(s)	310
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Kzo9I	GATC	5 cut(s)	313, 341, 415, 598, 1024
LmnI	GCTCC	1 cut(s)	562
LpnPI	CCDG	9 cut(s)	62, 89, 138, 324, 765, 807, 1008, 1091, 1124
Lsp1109I	GCAGC	2 cut(s)	73, 313
LweI	GCATC	3 cut(s)	880, 1016, 1071
MaeI	CTAG	2 cut(s)	857, 887
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	5 cut(s)	315, 343, 417, 600, 1026
MboI	GATC	5 cut(s)	313, 341, 415, 598, 1024
MflI	RGATCY	2 cut(s)	341, 598
MluCI	AATT	6 cut(s)	23, 85, 448, 469, 735, 831
MlyI	GAGTC	5 cut(s)	511, 586, 687, 764, 985
MnlI	CCTC	8 cut(s)	238, 315, 394, 534, 539, 832, 861, 1053
MroI	TCCGGA	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	48
MseI	TTAA	5 cut(s)	84, 468, 627, 711, 834
MslI	CAYNNNNRTG	1 cut(s)	876
MspI	CCGG	2 cut(s)	49, 311
MwoI	GCNNNNNNNGC	6 cut(s)	58, 70, 371, 380, 650, 805
NaeI	GCCGGC	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	541
NdeII	GATC	5 cut(s)	313, 341, 415, 598, 1024
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	5 cut(s)	416, 545, 608, 751, 881
NlaIV	GGNNCC	1 cut(s)	558
NspI	RCATGY	1 cut(s)	751
PagI	TCATGA	3 cut(s)	412, 604, 877
PcsI	WCGNNNNNNNCGW	2 cut(s)	236, 662
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	6 cut(s)	106, 260, 292, 683, 892, 915
Pfl23II	CGTACG	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	63, 303, 364
PleI	GAGTC	5 cut(s)	510, 586, 687, 763, 984
PpsI	GAGTC	5 cut(s)	510, 586, 687, 763, 984
PpuMI	RGGWCCY	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	75
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	438
PspPPI	RGGWCCY	1 cut(s)	438
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	2 cut(s)	341, 598
RsaI	GTAC	4 cut(s)	167, 198, 242, 1062
RsaNI	GTAC	4 cut(s)	166, 197, 241, 1061
RseI	CAYNNNNRTG	1 cut(s)	876
SaqAI	TTAA	5 cut(s)	84, 468, 627, 711, 834
SatI	GCNGC	3 cut(s)	62, 302, 363
Sau3AI	GATC	5 cut(s)	313, 341, 415, 598, 1024
Sau96I	GGNCC	1 cut(s)	438
SchI	GAGTC	5 cut(s)	511, 586, 687, 764, 985
SfaNI	GCATC	3 cut(s)	880, 1016, 1071
SfcI	CTRYAG	2 cut(s)	53, 442
SinI	GGWCC	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	2 cut(s)	594, 759
SmoI	CTYRAG	2 cut(s)	594, 759
Sse9I	AATT	6 cut(s)	23, 85, 448, 469, 735, 831
SsiI	CCGC	3 cut(s)	71, 363, 676
SspI	AATATT	1 cut(s)	702
SspMI	CTAG	2 cut(s)	857, 887
StyI	CCWWGG	3 cut(s)	131, 541, 660
TaaI	ACNGT	2 cut(s)	57, 566
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	4 cut(s)	287, 350, 918, 1023
TasI	AATT	6 cut(s)	23, 85, 448, 469, 735, 831
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	6 cut(s)	106, 260, 292, 683, 892, 915
Tru1I	TTAA	5 cut(s)	84, 468, 627, 711, 834
Tru9I	TTAA	5 cut(s)	84, 468, 627, 711, 834
TseI	GCWGC	2 cut(s)	61, 301
TspDTI	ATGAA	9 cut(s)	195, 224, 338, 366, 519, 593, 866, 894, 1110
TspGWI	ACGGA	4 cut(s)	153, 155, 228, 595
VpaK11BI	GGWCC	1 cut(s)	438
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	1 cut(s)	751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XspI	CTAG	2 cut(s)	857, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.