Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

25552463 .. 25554882

Gene Structure 2420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG261000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAACGAGCAAAAGATAGATTGTATTCGTTCCTGGCATCAACACAGCCATGGACTAATTAGTGATCCTCACTTTGAACTTGGTAGTCATTCTTCTCACCAGCTCTTGGGTTTGCAACAACAGCCTTGGAACATGGAAGTTTGGCTTCAGCAACCCACCATGGATCAGGGAGTGTCACAGCTTCAAAATATTGGGCCTGCAAAATCACCAAGCAGCATTATGAGCCGATTTGAATCACCGGCTTCGGCTTTCTATGCAACCGAAAGATGCATGGGATTTCCTTCGCACTATGAGTCTCAAGTTGTTGGTAATCCTAATCCTCCACAGTTCCCTTCAGGCCAATCATATGAGGAAAGCTACTCAATGGAATCATCAGAGGACATCAGAAATACCTTGCAATCAATTGTGAAATCCCAAACCAACAGCTCTCAATCTTATAAATCCTCTGAGAAGTCTGATCAAATCCCAAGCAACCATTTGCCAGGCAGTAAGCTCTTTCTGCATCAAGATAGTACTAGTGGCTCAGTTAGGAGACCCTTTTCACTAGCTTTCAAAGAAAGTCAGGAACAAGTGAGCTTCTTTTCTCAGCAAGGAAAGCAGTCTCCAAGAACTTCCTCAGGAACGGTTTCTGCAGCCTCTGGTGATTCTTCTTCAACCAGCCCATCACTCTCGAGTAAAACACGAATACGATGGAATCAAGATCTTCACGAGAAGTTTGTTGAGTGTGTCAATCGTCTTGGGGGTGCTGACAAAGCAACACCTAAGGCGATACTGAAGATGATGGGATTGGAGGGACTAACCATCTTTCATGTCAAAAGTCATTTGCAGAAATATCGAATCGCAAAATATTTGCCAGACTCTGCAGAAGGAAAGTATGAGAAAAGAGCTAATGTGAATGTCGAACCTCAGCTTGATGTGAAAACTGGCTTGCAAATCAAAGAGGCACTGCAACTACAACTAGATGTCCAGAGGCAACTTCACGAACAACTAGAGATTCAGCGAAATTTACAGTTGCGCATTGAAGAACAAGGGGAGCGGCTCAAGAAAATGTTTGACCTGCAGCAAAAAACAAGTGATAGCACGTTAAAGACTCCAAACGTGGATTTTACATGCCATGAAAATGGTCCATCAGATAATGAAATTCAAGTTTCAAGTCCTGAAGGTTCTGGGAATTCCCACTTCCCATCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

399

Amino Acids

44.72

Weight (kDa)

6.57

Isoelectric Point (pI)

71.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	230 - 279	3.3e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	310 - 357	7.9e-18	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
Acc16I	TGCGCA	1 cut(s)	1016
Acc36I	ACCTGC	1 cut(s)	1065
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	1036
AciI	CCGC	1 cut(s)	1036
AclWI	GGATC	2 cut(s)	59, 171
AcsI	RAATTY	3 cut(s)	1003, 1140, 1171
AcuI	CTGAAG	4 cut(s)	131, 318, 794, 1179
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	8 cut(s)	77, 185, 233, 553, 654, 1022, 1145, 1152
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	32, 481
AluBI	AGCT	9 cut(s)	103, 181, 357, 426, 493, 548, 576, 887, 910
AluI	AGCT	9 cut(s)	103, 181, 357, 426, 493, 548, 576, 887, 910
Alw26I	GTCTC	3 cut(s)	300, 526, 606
AlwI	GGATC	2 cut(s)	59, 171
AlwNI	CAGNNNCTG	2 cut(s)	638, 860
Ama87I	CYCGRG	1 cut(s)	670
AoxI	GGCC	2 cut(s)	194, 337
ApeKI	GCWGC	3 cut(s)	213, 632, 1060
ApoI	RAATTY	3 cut(s)	1003, 1140, 1171
Asp700I	GAANNNNTTC	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	1017
AspS9I	GGNCC	2 cut(s)	194, 1124
AsuHPI	GGTGA	4 cut(s)	89, 198, 228, 653
AvaI	CYCGRG	1 cut(s)	670
AvaII	GGWCC	1 cut(s)	1124
AxyI	CCTNAGG	2 cut(s)	616, 762
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	707
BbvCI	CCTCAGC	1 cut(s)	906
BbvI	GCAGC	3 cut(s)	225, 644, 1072
BccI	CCATC	6 cut(s)	670, 684, 775, 809, 1135, 1192
BcgI	CGANNNNNNTGC	2 cut(s)	815, 849
BciT130I	CCWGG	2 cut(s)	34, 483
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	3 cut(s)	300, 526, 606
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	4 cut(s)	516, 545, 959, 989
BfmI	CTRYAG	3 cut(s)	630, 861, 1058
BfuAI	ACCTGC	1 cut(s)	1065
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	4 cut(s)	214, 633, 1037, 1061
BlsI	GCNGC	4 cut(s)	215, 634, 1038, 1062
BmcAI	AGTACT	1 cut(s)	514
Bme1390I	CCNGG	2 cut(s)	34, 483
Bme18I	GGWCC	1 cut(s)	1124
BmeT110I	CYCGRG	1 cut(s)	670
BmgT120I	GGNCC	2 cut(s)	194, 1124
BmrFI	CCNGG	2 cut(s)	34, 483
BmsI	GCATC	3 cut(s)	46, 257, 511
Bpu10I	CCTNAGC	1 cut(s)	906
BpuEI	CTTGAG	2 cut(s)	282, 1025
BsaBI	GATNNNNATC	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	49, 125, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	928
Bse21I	CCTNAGG	2 cut(s)	616, 762
Bse8I	GATNNNNATC	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	34, 483
BseDI	CCNNGG	3 cut(s)	49, 125, 159
BseGI	GGATG	1 cut(s)	1184
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	5 cut(s)	438, 537, 599, 630, 920
BseNI	ACTGG	1 cut(s)	928
BseXI	GCAGC	3 cut(s)	225, 644, 1072
BshFI	GGCC	2 cut(s)	196, 339
BsiHKCI	CYCGRG	1 cut(s)	670
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	3 cut(s)	300, 526, 606
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	2 cut(s)	196, 339
Bso31I	GGTCTC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	670
Bsp143I	GATC	4 cut(s)	64, 163, 457, 700
Bsp19I	CCATGG	2 cut(s)	49, 159
BspACI	CCGC	1 cut(s)	1036
BspANI	GGCC	2 cut(s)	196, 339
BspCNI	CTCAG	5 cut(s)	439, 536, 598, 629, 919
BspMAI	CTGCAG	3 cut(s)	634, 865, 1062
BspMI	ACCTGC	1 cut(s)	1065
BspPI	GGATC	2 cut(s)	59, 171
BspTNI	GGTCTC	1 cut(s)	526
BsrBI	CCGCTC	1 cut(s)	1036
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	928
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	49, 125, 159
BssMI	GATC	4 cut(s)	64, 163, 457, 700
BssSI	CACGAG	1 cut(s)	707
BssT1I	CCWWGG	3 cut(s)	49, 125, 159
Bst2BI	CACGAG	1 cut(s)	707
Bst2UI	CCWGG	2 cut(s)	34, 483
Bst4CI	ACNGT	3 cut(s)	327, 625, 1011
BstC8I	GCNNGC	2 cut(s)	198, 929
BstDEI	CTNAG	6 cut(s)	447, 523, 585, 616, 762, 906
BstDSI	CCRYGG	2 cut(s)	49, 159
BstF5I	GGATG	1 cut(s)	1184
BstHHI	GCGC	1 cut(s)	1017
BstKTI	GATC	4 cut(s)	67, 166, 460, 703
BstMAI	GTCTC	3 cut(s)	300, 526, 606
BstMBI	GATC	4 cut(s)	64, 163, 457, 700
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 595, 752
BstNI	CCWGG	2 cut(s)	34, 483
BstNSI	RCATGY	1 cut(s)	1113
BstSCI	CCNGG	2 cut(s)	32, 481
BstSFI	CTRYAG	3 cut(s)	630, 861, 1058
BstV1I	GCAGC	3 cut(s)	225, 644, 1072
BstX2I	RGATCY	1 cut(s)	700
BstXI	CCANNNNNNTGG	1 cut(s)	1121
BstYI	RGATCY	1 cut(s)	700
Bsu36I	CCTNAGG	2 cut(s)	616, 762
BsuRI	GGCC	2 cut(s)	196, 339
BtgI	CCRYGG	2 cut(s)	49, 159
BtsCI	GGATG	1 cut(s)	1184
BtsI	GCAGTG	1 cut(s)	944
BtsIMutI	CAGTG	1 cut(s)	944
BveI	ACCTGC	1 cut(s)	1065
Cac8I	GCNNGC	2 cut(s)	198, 929
CaiI	CAGNNNCTG	2 cut(s)	638, 860
CfoI	GCGC	1 cut(s)	1017
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	194, 1124
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	7 cut(s)	50, 133, 160, 271, 809, 1110, 1115
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	6 cut(s)	447, 523, 585, 616, 762, 906
DpnI	GATC	4 cut(s)	66, 165, 459, 702
DpnII	GATC	4 cut(s)	64, 163, 457, 700
Eco130I	CCWWGG	3 cut(s)	49, 125, 159
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	1124
Eco57I	CTGAAG	4 cut(s)	131, 318, 794, 1179
Eco81I	CCTNAGG	2 cut(s)	616, 762
Eco88I	CYCGRG	1 cut(s)	670
EcoRI	GAATTC	1 cut(s)	1171
EcoRII	CCWGG	2 cut(s)	32, 481
EcoT14I	CCWWGG	3 cut(s)	49, 125, 159
EcoT22I	ATGCAT	1 cut(s)	272
ErhI	CCWWGG	3 cut(s)	49, 125, 159
FaeI	CATG	7 cut(s)	53, 136, 163, 274, 812, 1113, 1118
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	7 cut(s)	49, 132, 159, 270, 808, 1109, 1114
FauNDI	CATATG	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	214, 633, 1037, 1061
FokI	GGATG	1 cut(s)	1171
Fsp4HI	GCNGC	4 cut(s)	214, 633, 1037, 1061
FspBI	CTAG	4 cut(s)	516, 545, 959, 989
FspI	TGCGCA	1 cut(s)	1016
GlaI	GCGC	1 cut(s)	1016
GluI	GCNGC	4 cut(s)	214, 633, 1037, 1061
HaeIII	GGCC	2 cut(s)	196, 339
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	1017
Hin1II	CATG	7 cut(s)	53, 136, 163, 274, 812, 1113, 1118
Hin6I	GCGC	1 cut(s)	1015
HinP1I	GCGC	1 cut(s)	1015
HinfI	GANTC	9 cut(s)	233, 293, 368, 644, 694, 837, 857, 994, 1090
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	4 cut(s)	89, 198, 228, 653
Hpy188I	TCNGA	5 cut(s)	376, 386, 448, 457, 1132
HpyAV	CCTTC	4 cut(s)	291, 342, 860, 1154
HpyCH4III	ACNGT	3 cut(s)	327, 625, 1011
HpyCH4IV	ACGT	2 cut(s)	1082, 1098
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 595, 752
HpyF3I	CTNAG	6 cut(s)	447, 523, 585, 616, 762, 906
HpySE526I	ACGT	2 cut(s)	1082, 1098
Hsp92II	CATG	7 cut(s)	53, 136, 163, 274, 812, 1113, 1118
HspAI	GCGC	1 cut(s)	1015
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	64, 163, 457, 700
LmnI	GCTCC	1 cut(s)	1033
Lsp1109I	GCAGC	3 cut(s)	225, 644, 1072
LweI	GCATC	3 cut(s)	46, 257, 511
MaeI	CTAG	4 cut(s)	516, 545, 959, 989
MaeII	ACGT	2 cut(s)	1082, 1098
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	4 cut(s)	66, 165, 459, 702
MbiI	CCGCTC	1 cut(s)	1036
MboI	GATC	4 cut(s)	64, 163, 457, 700
MboII	GAAGA	6 cut(s)	84, 639, 642, 695, 787, 1034
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	700
MluCI	AATT	5 cut(s)	57, 402, 1003, 1140, 1171
MlyI	GAGTC	3 cut(s)	302, 851, 1084
Mph1103I	ATGCAT	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	625
MseI	TTAA	1 cut(s)	1085
MslI	CAYNNNNRTG	2 cut(s)	48, 1119
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	34, 483
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	34, 483
MwoI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 595, 752
NcoI	CCATGG	2 cut(s)	49, 159
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	4 cut(s)	64, 163, 457, 700
NlaIII	CATG	7 cut(s)	53, 136, 163, 274, 812, 1113, 1118
NmuCI	GTSAC	1 cut(s)	174
NsbI	TGCGCA	1 cut(s)	1016
NsiI	ATGCAT	1 cut(s)	272
NspI	RCATGY	1 cut(s)	1113
PaeR7I	CTCGAG	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	625
PfeI	GAWTC	6 cut(s)	233, 368, 644, 694, 837, 994
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	215, 634, 1038, 1062
PleI	GAGTC	3 cut(s)	301, 851, 1084
PpsI	GAGTC	3 cut(s)	301, 851, 1084
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	32, 481
PspGI	CCWGG	2 cut(s)	32, 481
PspPI	GGNCC	2 cut(s)	194, 1124
PstI	CTGCAG	3 cut(s)	634, 865, 1062
PstNI	CAGNNNCTG	2 cut(s)	638, 860
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	2 cut(s)	48, 1119
SaqAI	TTAA	1 cut(s)	1085
SatI	GCNGC	4 cut(s)	214, 633, 1037, 1061
Sau3AI	GATC	4 cut(s)	64, 163, 457, 700
Sau96I	GGNCC	2 cut(s)	194, 1124
ScaI	AGTACT	1 cut(s)	514
SchI	GAGTC	3 cut(s)	302, 851, 1084
ScrFI	CCNGG	2 cut(s)	34, 483
SfaNI	GCATC	3 cut(s)	46, 257, 511
SfcI	CTRYAG	3 cut(s)	630, 861, 1058
Sfr274I	CTCGAG	1 cut(s)	670
SinI	GGWCC	1 cut(s)	1124
SlaI	CTCGAG	1 cut(s)	670
SmiMI	CAYNNNNRTG	2 cut(s)	48, 1119
SmlI	CTYRAG	3 cut(s)	297, 670, 1040
SmoI	CTYRAG	3 cut(s)	297, 670, 1040
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	5 cut(s)	57, 402, 1003, 1140, 1171
SsiI	CCGC	1 cut(s)	1036
SspI	AATATT	2 cut(s)	190, 848
SspMI	CTAG	4 cut(s)	516, 545, 959, 989
StyD4I	CCNGG	2 cut(s)	32, 481
StyI	CCWWGG	3 cut(s)	49, 125, 159
TaaI	ACNGT	3 cut(s)	327, 625, 1011
TaiI	ACGT	2 cut(s)	1085, 1101
TaqI	TCGA	3 cut(s)	671, 835, 900
TasI	AATT	5 cut(s)	57, 402, 1003, 1140, 1171
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	1 cut(s)	1039
TfiI	GAWTC	6 cut(s)	233, 368, 644, 694, 837, 994
Tru1I	TTAA	1 cut(s)	1085
Tru9I	TTAA	1 cut(s)	1085
TscAI	CASTG	1 cut(s)	951
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	3 cut(s)	213, 632, 1060
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	4 cut(s)	17, 797, 1131, 1152
TspRI	CASTG	1 cut(s)	951
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	1124
XapI	RAATTY	3 cut(s)	1003, 1140, 1171
XceI	RCATGY	1 cut(s)	1113
XhoI	CTCGAG	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	625
XspI	CTAG	4 cut(s)	516, 545, 959, 989
ZrmI	AGTACT	1 cut(s)	514
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.