Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Reverse (-)

6743591 .. 6746221

Gene Structure 2631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1058400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAATGAGAAGAAGATTGATTGCCAAGAAAGAAATCAACAAAGCCATGAATTAATCGGTGAGTGCAGTTTTGAACTTGGTAATCAGTCTTGTCAAATTTTTGGTCAGCAGCAACAGCAGGCTTGGAACAACATGGGAATTTGGGTTCAGCAACCCACCATGGATCATGAAGTGTCACTGCTTCAAAATCTTGGGCCTCCTAAAACTCCCAGCAGCATTATCAGCCGCTTCGAATCGCCCGTTTCAGCTTTCTACGCAACTGAACTCTATATGGGGGGGTTTCCACAGTATGACTCTCAAGCTGGTCAGAATCCTCAGTTCCCATCAGGCCAATCTAATACTGAAAGCTACAGCTCCATGAATTCATCTGAGCAAGCTCCGAATTTCGACATCAGAAACACCCTGCAATCAATTGTGAAATCTCAACCCAGCAGCTATCAATACCATAAATCCTTAGAGAAGTGTAATCAAATCCCAGCAAGCGATTTGTCAGGCAGTATGCTGTTTACACATCAATCAAATAAGTTGCATGGAAATCATAATACTACTACAGTTAGAAGACCCTCCTTTTCCCTTCCTTCTAAAGAAAATCAGGATCAAGTAGGTTATTGTAATTCGTTCACTACTTGTCCGGTTACACAACTGAGCTTCTTTTCCGGGCAAGGAAAGCAGCCTCCAAGAATTTCCTCCGGACATGTTTCCGATTGTTATGGTGATTCTCCTTCATCCAGCCCTGTACTTTCAAGTAAAACACGAATTCGTTGGAATCAAGATCTTCATGAGAAGTTCGTTGAGTGTGTAAATCGTCTTGGGGGTGCGGACAAAGCAACACCGAAGGCAATATTGAAGATGATGGGTTTAGACGGATTAACCATCTTTCATGTCAAAAGTCATCTGCAGAAATATCGAATTGCGAAATACCTACCAGACCCAGCAGAAGGAAAATCTGAGAAAAGAACTACTTTGAATGTTGAACCCCAGCTCAATGTGAAAACTTGCTTGCAAATTAAAGAGGCACTCCAACTGCAATTAGATGTCCAGCGATGTCTTCACGAACAATTGGAGACTCAACGAAAGTTACAGTTACGAATTGAAGAACAAGGGAAGCAGCTCAGGAAGATGTTCAATCTGCAACAACAAACAACTAGTAACCCGTTGAAGACTCAGAACTCGGATGTCACATGCCATGAAGCTGCCCCATCAAATAGTCTCGACAATACTGATCAGCTTTCAACTCCTGAAGGTTCTAGTTTTCCCTCCAGGACAAGTTCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

426

Amino Acids

47.67

Weight (kDa)

7.58

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	254 - 303	3.5e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	334 - 381	4.4e-18	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	689
AciI	CCGC	2 cut(s)	226, 818
AclWI	GGATC	2 cut(s)	171, 603
AcsI	RAATTY	6 cut(s)	96, 138, 361, 382, 681, 756
AcuI	CTGAAG	1 cut(s)	1260
AfaI	GTAC	1 cut(s)	738
AfiI	CCNNNNNNNGG	1 cut(s)	938
AflIII	ACRYGT	1 cut(s)	694
AhlI	ACTAGT	1 cut(s)	1145
AjnI	CCWGG	1 cut(s)	1259
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
Alw26I	GTCTC	2 cut(s)	1058, 1214
AlwI	GGATC	2 cut(s)	171, 603
Aor13HI	TCCGGA	1 cut(s)	689
AoxI	GGCC	2 cut(s)	194, 328
ApeKI	GCWGC	6 cut(s)	109, 213, 432, 670, 1108, 1193
ApoI	RAATTY	6 cut(s)	96, 138, 361, 382, 681, 756
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AseI	ATTAAT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	1121
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	2 cut(s)	71, 725
AsuII	TTCGAA	1 cut(s)	231
BbsI	GAAGAC	3 cut(s)	565, 1040, 1166
BbvI	GCAGC	6 cut(s)	121, 225, 444, 682, 1120, 1180
BccI	CCATC	4 cut(s)	331, 847, 881, 1207
BcgI	CGANNNNNNTGC	2 cut(s)	887, 921
BciT130I	CCWGG	1 cut(s)	1261
BclI	TGATCA	1 cut(s)	1222
BcnI	CCSGG	1 cut(s)	658
BcoDI	GTCTC	2 cut(s)	1058, 1214
BcuI	ACTAGT	1 cut(s)	1145
BfaI	CTAG	2 cut(s)	1146, 1248
BfmI	CTRYAG	3 cut(s)	349, 549, 896
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	7 cut(s)	110, 214, 226, 433, 671, 1109, 1194
BlsI	GCNGC	7 cut(s)	111, 215, 227, 434, 672, 1110, 1195
Bme1390I	CCNGG	2 cut(s)	658, 1261
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	2 cut(s)	658, 1261
BpiI	GAAGAC	3 cut(s)	565, 1040, 1166
BpmI	CTGGAG	1 cut(s)	1243
Bpu10I	CCTNAGC	1 cut(s)	1112
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	2 cut(s)	631, 689
BsaXI	ACNNNNNCTCC	1 cut(s)	1255
Bsc4I	CCNNNNNNNGG	1 cut(s)	938
BseAI	TCCGGA	1 cut(s)	689
BseBI	CCWGG	1 cut(s)	1261
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	725, 1180
BseLI	CCNNNNNNNGG	1 cut(s)	938
BseMII	CTCAG	6 cut(s)	329, 360, 635, 939, 1126, 1178
BseXI	GCAGC	6 cut(s)	121, 225, 444, 682, 1120, 1180
BseYI	CCCAGC	5 cut(s)	209, 428, 475, 931, 978
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	196, 330
BsiSI	CCGG	3 cut(s)	632, 657, 690
BslI	CCNNNNNNNGG	1 cut(s)	938
BsmAI	GTCTC	2 cut(s)	1058, 1214
BsnI	GGCC	2 cut(s)	196, 330
Bsp119I	TTCGAA	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	689
Bsp143I	GATC	4 cut(s)	163, 595, 772, 1222
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	226, 818
BspANI	GGCC	2 cut(s)	196, 330
BspCNI	CTCAG	6 cut(s)	328, 361, 636, 940, 1125, 1177
BspEI	TCCGGA	1 cut(s)	689
BspHI	TCATGA	2 cut(s)	166, 778
BspMAI	CTGCAG	1 cut(s)	900
BspPI	GGATC	2 cut(s)	171, 603
BspT104I	TTCGAA	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	4 cut(s)	163, 595, 772, 1222
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	1261
Bst4CI	ACNGT	3 cut(s)	288, 553, 1083
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	4 cut(s)	120, 375, 481, 1001
BstDEI	CTNAG	7 cut(s)	315, 369, 454, 644, 948, 1112, 1164
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	725, 1180
BstKTI	GATC	4 cut(s)	166, 598, 775, 1225
BstMAI	GTCTC	2 cut(s)	1058, 1214
BstMBI	GATC	4 cut(s)	163, 595, 772, 1222
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 222, 254, 667, 824
BstNI	CCWGG	1 cut(s)	1261
BstNSI	RCATGY	2 cut(s)	698, 1185
BstSCI	CCNGG	2 cut(s)	656, 1259
BstSFI	CTRYAG	3 cut(s)	349, 549, 896
BstV1I	GCAGC	6 cut(s)	121, 225, 444, 682, 1120, 1180
BstV2I	GAAGAC	3 cut(s)	565, 1040, 1166
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
BsuRI	GGCC	2 cut(s)	196, 330
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	1057
BtsCI	GGATG	2 cut(s)	725, 1180
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	4 cut(s)	120, 375, 481, 1001
CciI	TCATGA	2 cut(s)	166, 778
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	737
CviQI	GTAC	1 cut(s)	737
DdeI	CTNAG	7 cut(s)	315, 369, 454, 644, 948, 1112, 1164
DpnI	GATC	4 cut(s)	165, 597, 774, 1224
DpnII	GATC	4 cut(s)	163, 595, 772, 1222
Eco130I	CCWWGG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	1260
EcoRI	GAATTC	2 cut(s)	361, 756
EcoRII	CCWGG	1 cut(s)	1259
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FalI	AAGNNNNNCTT	2 cut(s)	946, 978
FbaI	TGATCA	1 cut(s)	1222
Fnu4HI	GCNGC	7 cut(s)	110, 214, 226, 433, 671, 1109, 1194
FokI	GGATG	2 cut(s)	712, 1187
Fsp4HI	GCNGC	7 cut(s)	110, 214, 226, 433, 671, 1109, 1194
FspBI	CTAG	2 cut(s)	1146, 1248
GluI	GCNGC	7 cut(s)	110, 214, 226, 433, 671, 1109, 1194
GsaI	CCCAGC	5 cut(s)	213, 432, 479, 935, 982
GsuI	CTGGAG	1 cut(s)	1243
HaeIII	GGCC	2 cut(s)	196, 330
HapII	CCGG	3 cut(s)	632, 657, 690
HinfI	GANTC	7 cut(s)	233, 293, 310, 716, 766, 1066, 1162
HpaII	CCGG	3 cut(s)	632, 657, 690
HphI	GGTGA	2 cut(s)	71, 725
Hpy166II	GTNNAC	2 cut(s)	507, 621
Hpy188I	TCNGA	8 cut(s)	309, 370, 381, 395, 703, 949, 1167, 1174
Hpy188III	TCNNGA	9 cut(s)	167, 593, 690, 770, 779, 1052, 1114, 1211, 1238
Hpy8I	GTNNAC	2 cut(s)	507, 621
HpyAV	CCTTC	6 cut(s)	584, 588, 732, 829, 932, 1235
HpyCH4III	ACNGT	3 cut(s)	288, 553, 1083
HpyCH4V	TGCA	7 cut(s)	66, 406, 529, 898, 1003, 1027, 1132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 222, 254, 667, 824
HpyF3I	CTNAG	7 cut(s)	315, 369, 454, 644, 948, 1112, 1164
Kpn2I	TCCGGA	1 cut(s)	689
Ksp22I	TGATCA	1 cut(s)	1222
Kzo9I	GATC	4 cut(s)	163, 595, 772, 1222
LmnI	GCTCC	2 cut(s)	359, 382
Lsp1109I	GCAGC	6 cut(s)	121, 225, 444, 682, 1120, 1180
MaeI	CTAG	2 cut(s)	1146, 1248
MaeIII	GTNAC	6 cut(s)	174, 634, 1077, 1083, 1148, 1177
MalI	GATC	4 cut(s)	165, 597, 774, 1224
MboI	GATC	4 cut(s)	163, 595, 772, 1222
MboII	GAAGA	9 cut(s)	22, 25, 570, 767, 859, 1040, 1106, 1129, 1171
MfeI	CAATTG	2 cut(s)	411, 1058
MflI	RGATCY	1 cut(s)	772
MlyI	GAGTC	3 cut(s)	287, 1060, 1156
MmeI	TCCRAC	2 cut(s)	743, 1045
MnlI	CCTC	7 cut(s)	207, 324, 574, 684, 697, 1006, 1267
MroI	TCCGGA	1 cut(s)	689
MroXI	GAANNNNTTC	1 cut(s)	1121
MseI	TTAA	3 cut(s)	53, 869, 1008
MspI	CCGG	3 cut(s)	632, 657, 690
MspR9I	CCNGG	2 cut(s)	658, 1261
MunI	CAATTG	2 cut(s)	411, 1058
MvaI	CCWGG	1 cut(s)	1261
MwoI	GCNNNNNNNGC	5 cut(s)	115, 222, 254, 667, 824
NciI	CCSGG	1 cut(s)	658
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	163, 595, 772, 1222
NmuCI	GTSAC	2 cut(s)	174, 1177
NspI	RCATGY	2 cut(s)	698, 1185
NspV	TTCGAA	1 cut(s)	231
PagI	TCATGA	2 cut(s)	166, 778
PciI	ACATGT	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	1121
PfeI	GAWTC	4 cut(s)	233, 310, 716, 766
PfoI	TCCNGGA	1 cut(s)	1259
PkrI	GCNGC	7 cut(s)	111, 215, 227, 434, 672, 1110, 1195
PleI	GAGTC	3 cut(s)	287, 1060, 1156
PpsI	GAGTC	3 cut(s)	287, 1060, 1156
PscI	ACATGT	1 cut(s)	694
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	1259
PspFI	CCCAGC	5 cut(s)	209, 428, 475, 931, 978
PspGI	CCWGG	1 cut(s)	1259
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	900
PsuI	RGATCY	1 cut(s)	772
RsaI	GTAC	1 cut(s)	738
RsaNI	GTAC	1 cut(s)	737
SaqAI	TTAA	3 cut(s)	53, 869, 1008
SatI	GCNGC	7 cut(s)	110, 214, 226, 433, 671, 1109, 1194
Sau3AI	GATC	4 cut(s)	163, 595, 772, 1222
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	3 cut(s)	287, 1060, 1156
ScrFI	CCNGG	2 cut(s)	658, 1261
SfcI	CTRYAG	3 cut(s)	349, 549, 896
SfuI	TTCGAA	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
SpeI	ACTAGT	1 cut(s)	1145
SsiI	CCGC	2 cut(s)	226, 818
SspI	AATATT	1 cut(s)	843
SspMI	CTAG	2 cut(s)	1146, 1248
StyD4I	CCNGG	2 cut(s)	656, 1259
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	288, 553, 1083
TaqI	TCGA	4 cut(s)	231, 387, 907, 1212
TatI	WGTACW	1 cut(s)	736
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	4 cut(s)	233, 310, 716, 766
Tru1I	TTAA	3 cut(s)	53, 869, 1008
Tru9I	TTAA	3 cut(s)	53, 869, 1008
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	2 cut(s)	174, 1177
TseI	GCWGC	6 cut(s)	109, 213, 432, 670, 1108, 1193
Tsp45I	GTSAC	2 cut(s)	174, 1177
TspDTI	ATGAA	9 cut(s)	17, 63, 183, 354, 374, 714, 767, 869, 1203
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	53
XapI	RAATTY	6 cut(s)	96, 138, 361, 382, 681, 756
XceI	RCATGY	2 cut(s)	698, 1185
XmnI	GAANNNNTTC	1 cut(s)	1121
XspI	CTAG	2 cut(s)	1146, 1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.