Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

23903942 .. 23907322

Gene Structure 3381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG231100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATCAGGGAGTGTCACAGCTTCAAAATATTGGGCCTGCAAAATCACCAAGCAGCATTATGAGCCGATTTGAATCACCGGCTTCGGCTTTCTATGCAACCGAAAGATGCATGGGATTTCCTTCGCACTATGAGTCTCAAGTTGTTGGTAATCCTAATCCTCCACAGTTCCCTTCAGGCCAATCATATGAGGAAAGCTACTCAATGGAATCATCAGAGGACATCAGAAATACCTTGCAATCAATTGTGAAATCCCAAACCAACAGCTCTCAATCTTATAAATCCTCTGAGAAGTCTGATCAAATCCCAAGCAACCATTTGCCAGGCAGTAAGCTCTTTCTGCATCAACAAATGCATCAAGATAGTACTAGTGGCTCAGTTAGGAGACCCTTTTCACTAGCTTTCAAAGAAAATCAGGAACAAGTGAGCTTCTTTTCTCAGCAAGCAAAGCAGTCTCCAAGAACTTCCTCAGGAACGGTTTCTGCAACCTCTGGTGATTCTTCTTCAACCAGCCCATCACTCTCGAGTAAAACACGAATACGATGGAATCAAGATCTTCACGAGAAGTTTGTTGAGTGTGTCAATCGTCTTGGGGGTGCTGACAAAGCAACACCTAAGGCGATACTGAAGAAGATGGGATTGGAGGGACTAACCATCTTTCATGTCAAAAGTCATTTGCAGAAATATCGAATCGCAAAATATTTGCCAGACTCTGCAGAAGGAAAATCTGAGAAAAGAGCTAATGTGAATGTCGAACCTCAGCTTGATGTGAAAACTGGCTTGCAAATCAAAGAGGCACTGCAACTACAACTAGATGTCCAGAGGCAACTTCACGAACAACTAGAGATTCAGCGAAATTTACAGTTGCGCATTGAAGAACAAGGGGAGCGGCTCAAGAAAATGTTTGACCTGCAGCAAAAAACAAGTGATAGCACGTTAAAGACTCCAAACGTGGATTTTACATGCCATGAAAATGGTCCATCAGATAATGAAATTCAAGTTTCAAGTCCTGAAGGTTCTGGGAATTCCCACTTCCCATCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

350

Amino Acids

38.99

Weight (kDa)

7.75

Isoelectric Point (pI)

75.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	181 - 230	3.3e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	261 - 308	6.5e-18	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
Acc16I	TGCGCA	1 cut(s)	869
Acc36I	ACCTGC	1 cut(s)	918
AccBSI	CCGCTC	1 cut(s)	889
AciI	CCGC	1 cut(s)	889
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	856, 993, 1024
AcuI	CTGAAG	3 cut(s)	159, 647, 1032
AfaI	GTAC	1 cut(s)	367
AgsI	TTSAA	7 cut(s)	26, 74, 406, 507, 875, 998, 1005
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	8 cut(s)	22, 198, 267, 334, 401, 429, 740, 763
AluI	AGCT	8 cut(s)	22, 198, 267, 334, 401, 429, 740, 763
Alw26I	GTCTC	3 cut(s)	141, 379, 459
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	713
Ama87I	CYCGRG	1 cut(s)	523
AoxI	GGCC	2 cut(s)	35, 178
ApeKI	GCWGC	2 cut(s)	54, 913
ApoI	RAATTY	3 cut(s)	856, 993, 1024
Asp700I	GAANNNNTTC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	870
AspS9I	GGNCC	2 cut(s)	35, 977
AsuHPI	GGTGA	3 cut(s)	39, 69, 506
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	977
AxyI	CCTNAGG	2 cut(s)	469, 615
BauI	CACGAG	1 cut(s)	560
BbvCI	CCTCAGC	1 cut(s)	759
BbvI	GCAGC	2 cut(s)	66, 925
BccI	CCATC	6 cut(s)	523, 537, 628, 662, 988, 1045
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	1 cut(s)	324
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	3 cut(s)	141, 379, 459
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	4 cut(s)	369, 398, 812, 842
BfmI	CTRYAG	2 cut(s)	714, 911
BfuAI	ACCTGC	1 cut(s)	918
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	3 cut(s)	55, 890, 914
BlsI	GCNGC	3 cut(s)	56, 891, 915
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	977
BmeT110I	CYCGRG	1 cut(s)	523
BmgT120I	GGNCC	2 cut(s)	35, 977
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	3 cut(s)	98, 352, 364
Bpu10I	CCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	2 cut(s)	123, 878
BsaBI	GATNNNNATC	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	379
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	781
Bse21I	CCTNAGG	2 cut(s)	469, 615
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	1037
BseJI	GATNNNNATC	1 cut(s)	73
BseMII	CTCAG	6 cut(s)	279, 390, 452, 483, 720, 773
BseNI	ACTGG	1 cut(s)	781
BseXI	GCAGC	2 cut(s)	66, 925
BshFI	GGCC	2 cut(s)	37, 180
BsiHKCI	CYCGRG	1 cut(s)	523
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	660
BsmAI	GTCTC	3 cut(s)	141, 379, 459
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	2 cut(s)	37, 180
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	4, 298, 553
BspACI	CCGC	1 cut(s)	889
BspANI	GGCC	2 cut(s)	37, 180
BspCNI	CTCAG	6 cut(s)	280, 389, 451, 482, 721, 772
BspMAI	CTGCAG	2 cut(s)	718, 915
BspMI	ACCTGC	1 cut(s)	918
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	889
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	781
BssAI	RCCGGY	1 cut(s)	79
BssMI	GATC	3 cut(s)	4, 298, 553
BssSI	CACGAG	1 cut(s)	560
Bst2BI	CACGAG	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	168, 478, 864
BstC8I	GCNNGC	3 cut(s)	39, 444, 782
BstDEI	CTNAG	7 cut(s)	288, 376, 438, 469, 615, 729, 759
BstF5I	GGATG	1 cut(s)	1037
BstHHI	GCGC	1 cut(s)	870
BstKTI	GATC	3 cut(s)	7, 301, 556
BstMAI	GTCTC	3 cut(s)	141, 379, 459
BstMBI	GATC	3 cut(s)	4, 298, 553
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 95, 340, 448, 605
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	966
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	2 cut(s)	714, 911
BstV1I	GCAGC	2 cut(s)	66, 925
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	974
BstYI	RGATCY	1 cut(s)	553
Bsu36I	CCTNAGG	2 cut(s)	469, 615
BsuRI	GGCC	2 cut(s)	37, 180
BtsCI	GGATG	1 cut(s)	1037
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	1 cut(s)	797
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	3 cut(s)	39, 444, 782
CaiI	CAGNNNCTG	1 cut(s)	713
CfoI	GCGC	1 cut(s)	870
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	35, 977
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	4 cut(s)	112, 662, 963, 968
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	7 cut(s)	288, 376, 438, 469, 615, 729, 759
DpnI	GATC	3 cut(s)	6, 300, 555
DpnII	GATC	3 cut(s)	4, 298, 553
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	977
Eco57I	CTGAAG	3 cut(s)	159, 647, 1032
Eco81I	CCTNAGG	2 cut(s)	469, 615
Eco88I	CYCGRG	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	1024
EcoRII	CCWGG	1 cut(s)	322
EcoT22I	ATGCAT	2 cut(s)	113, 357
FaeI	CATG	4 cut(s)	115, 665, 966, 971
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	4 cut(s)	111, 661, 962, 967
FauNDI	CATATG	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	55, 890, 914
FokI	GGATG	1 cut(s)	1024
Fsp4HI	GCNGC	3 cut(s)	55, 890, 914
FspBI	CTAG	4 cut(s)	369, 398, 812, 842
FspI	TGCGCA	1 cut(s)	869
GlaI	GCGC	1 cut(s)	869
GluI	GCNGC	3 cut(s)	55, 890, 914
HaeIII	GGCC	2 cut(s)	37, 180
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	870
Hin1II	CATG	4 cut(s)	115, 665, 966, 971
Hin6I	GCGC	1 cut(s)	868
HinP1I	GCGC	1 cut(s)	868
HinfI	GANTC	9 cut(s)	74, 134, 209, 497, 547, 690, 710, 847, 943
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	3 cut(s)	39, 69, 506
Hpy188I	TCNGA	6 cut(s)	217, 227, 289, 298, 730, 985
HpyAV	CCTTC	4 cut(s)	132, 183, 713, 1007
HpyCH4III	ACNGT	3 cut(s)	168, 478, 864
HpyCH4IV	ACGT	2 cut(s)	935, 951
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 95, 340, 448, 605
HpyF3I	CTNAG	7 cut(s)	288, 376, 438, 469, 615, 729, 759
HpySE526I	ACGT	2 cut(s)	935, 951
Hsp92II	CATG	4 cut(s)	115, 665, 966, 971
HspAI	GCGC	1 cut(s)	868
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	4, 298, 553
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	2 cut(s)	66, 925
LweI	GCATC	3 cut(s)	98, 352, 364
MaeI	CTAG	4 cut(s)	369, 398, 812, 842
MaeII	ACGT	2 cut(s)	935, 951
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	3 cut(s)	6, 300, 555
MbiI	CCGCTC	1 cut(s)	889
MboI	GATC	3 cut(s)	4, 298, 553
MboII	GAAGA	6 cut(s)	492, 495, 548, 640, 643, 887
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	4 cut(s)	243, 856, 993, 1024
MlyI	GAGTC	3 cut(s)	143, 704, 937
Mph1103I	ATGCAT	2 cut(s)	113, 357
MroXI	GAANNNNTTC	1 cut(s)	478
MseI	TTAA	1 cut(s)	938
MslI	CAYNNNNRTG	1 cut(s)	972
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	5 cut(s)	63, 95, 340, 448, 605
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	3 cut(s)	4, 298, 553
NlaIII	CATG	4 cut(s)	115, 665, 966, 971
NmuCI	GTSAC	1 cut(s)	15
NsbI	TGCGCA	1 cut(s)	869
NsiI	ATGCAT	2 cut(s)	113, 357
NspI	RCATGY	1 cut(s)	966
PaeR7I	CTCGAG	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	6 cut(s)	74, 209, 497, 547, 690, 847
PkrI	GCNGC	3 cut(s)	56, 891, 915
PleI	GAGTC	3 cut(s)	142, 704, 937
PpsI	GAGTC	3 cut(s)	142, 704, 937
PsiI	TTATAA	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	35, 977
PstI	CTGCAG	2 cut(s)	718, 915
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	972
SaqAI	TTAA	1 cut(s)	938
SatI	GCNGC	3 cut(s)	55, 890, 914
Sau3AI	GATC	3 cut(s)	4, 298, 553
Sau96I	GGNCC	2 cut(s)	35, 977
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	3 cut(s)	143, 704, 937
ScrFI	CCNGG	1 cut(s)	324
SfaNI	GCATC	3 cut(s)	98, 352, 364
SfcI	CTRYAG	2 cut(s)	714, 911
Sfr274I	CTCGAG	1 cut(s)	523
SinI	GGWCC	1 cut(s)	977
SlaI	CTCGAG	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	972
SmlI	CTYRAG	3 cut(s)	138, 523, 893
SmoI	CTYRAG	3 cut(s)	138, 523, 893
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	4 cut(s)	243, 856, 993, 1024
SsiI	CCGC	1 cut(s)	889
SspI	AATATT	2 cut(s)	31, 701
SspMI	CTAG	4 cut(s)	369, 398, 812, 842
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	3 cut(s)	168, 478, 864
TaiI	ACGT	2 cut(s)	938, 954
TaqI	TCGA	3 cut(s)	524, 688, 753
TasI	AATT	4 cut(s)	243, 856, 993, 1024
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	6 cut(s)	74, 209, 497, 547, 690, 847
Tru1I	TTAA	1 cut(s)	938
Tru9I	TTAA	1 cut(s)	938
TscAI	CASTG	1 cut(s)	804
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	54, 913
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	650, 984, 1005
TspRI	CASTG	1 cut(s)	804
VpaK11BI	GGWCC	1 cut(s)	977
XapI	RAATTY	3 cut(s)	856, 993, 1024
XceI	RCATGY	1 cut(s)	966
XhoI	CTCGAG	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	4 cut(s)	369, 398, 812, 842
ZrmI	AGTACT	1 cut(s)	367
Zsp2I	ATGCAT	2 cut(s)	113, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.