Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Reverse (-)

24839013 .. 24843151

Gene Structure 4139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023522

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGAACGAGCAAAAGATAGATTGCCAGGAACGAATACATCAACACAGCTATGGACTAATTAGTGATCCTAACTTTGAACTTGGTAGTCATTCTTCTCACCAGCTCTTGGGTCTGCAACAACAGCCTTGGAACATGGAAGTTTGGCTTCAGCAACCCACCATGGATCAGGGAGTGTTACAGCTTCAAAATATTGGGCCTGCAAAATCACCAAGCAGCATTATGAGCCGATTTGAATCACCGGCTTCGGCTTTCTATGCAACCGAAAGATGCATGGGATTTCCTTCGCACTATGAGTCTCAAGTTGTTGGTAATCCTAATCCTCCACAGTTCCCTTCAGGCCAATCATATGAGGAAAGCTGCTCAATGGAATCATCCGAGGACATCAGAAATACCTTGCAATCAATTGTGAAATCCCAAACCAACAGCTCTCAAACTTATAAATCCTCTGAGAAGTCTAATCAAATCCCAAGCAACCATTTGCCAGGCAGTAAGCTCTTTCTGCATCAACAAATGCATCAAGATAGTACTATTGGCTCAGTTAGGAGACCCTTTCCACTTGCTTTCAAAGAAAATCAGGAACAAGTGAGCTTCTTTTCTCAGCAAGCAAAGCAGTCTCCAAGAACTTCCTCAGGAACGGTTTCTGCAACCTCTGGTGATTCTTCTTCAACCAGCCCATCACTCTCGAGTAAAACACGAATACGATGGAATCAAGATCTTCACGAGAAGTTTGTTGAGTGTGTCAATCGTCTTGGGGGTGCTGACAAAGCAACACCTAAGGCGATACTGAGGATGATGGGATTGGAGGGACTAACCATCTTTCATGTCAAAAGTCATTTGCAGAAATATCGAATCGCAAAATATTTGCCAGACTCTGCAGAAGGAAAATCTGAGAAAAGAGCTAATGTGAATGTCGAACCTCAGCTTGATGTGAAAACCTTCTTACACACCTATGATGTGAATTTTTCTGGCAGTGGCTTGCAAATCAAAGAGGCACTGCAACTACAACTAGATGTCCAGAGGCAACTTCACGAACAACTAGAGATTCAGCGAAATTTACAGTTGCGCATTGAAGAACAAGGGGAGCGGCTCAAGAAAATGTTTGACCTGCAGCAAAAAACAAGTGATAACATGTTAAAGACTCCAAACGTGGATTTTACATGCCATGAAAATGGTCCATCAGATAATGAAATTCAAGTTTCAAGTCCTGAAGGTTCTGGGAATTCCCACTTCCCATCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

416

Amino Acids

46.7

Weight (kDa)

6.44

Isoelectric Point (pI)

70.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	234 - 283	6e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	326 - 373	8.3e-18	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
Acc16I	TGCGCA	1 cut(s)	1064
Acc36I	ACCTGC	1 cut(s)	1113
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	1084
AciI	CCGC	1 cut(s)	1084
AclWI	GGATC	2 cut(s)	59, 171
AcsI	RAATTY	4 cut(s)	958, 1051, 1188, 1219
AcuI	CTGAAG	3 cut(s)	131, 318, 1227
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	1128
AgsI	TTSAA	8 cut(s)	77, 185, 233, 565, 666, 1070, 1193, 1200
AjnI	CCWGG	2 cut(s)	24, 481
AluBI	AGCT	9 cut(s)	48, 103, 181, 357, 426, 493, 588, 899, 922
AluI	AGCT	9 cut(s)	48, 103, 181, 357, 426, 493, 588, 899, 922
Alw26I	GTCTC	3 cut(s)	300, 538, 618
AlwI	GGATC	2 cut(s)	59, 171
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	682
AoxI	GGCC	2 cut(s)	194, 337
ApeKI	GCWGC	3 cut(s)	213, 357, 1108
ApoI	RAATTY	4 cut(s)	958, 1051, 1188, 1219
Asp700I	GAANNNNTTC	2 cut(s)	637, 935
AspLEI	GCGC	1 cut(s)	1065
AspS9I	GGNCC	2 cut(s)	194, 1172
AsuHPI	GGTGA	4 cut(s)	89, 198, 228, 665
AvaI	CYCGRG	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	1172
AxyI	CCTNAGG	2 cut(s)	628, 774
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	719
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	3 cut(s)	225, 344, 1120
BccI	CCATC	6 cut(s)	682, 696, 787, 821, 1183, 1240
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	2 cut(s)	26, 483
BcoDI	GTCTC	3 cut(s)	300, 538, 618
BfaI	CTAG	2 cut(s)	1007, 1037
BfmI	CTRYAG	2 cut(s)	873, 1106
BfuAI	ACCTGC	1 cut(s)	1113
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	4 cut(s)	214, 358, 1085, 1109
BlsI	GCNGC	4 cut(s)	215, 359, 1086, 1110
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	2 cut(s)	26, 483
Bme18I	GGWCC	1 cut(s)	1172
BmeT110I	CYCGRG	1 cut(s)	682
BmgT120I	GGNCC	2 cut(s)	194, 1172
BmrFI	CCNGG	2 cut(s)	26, 483
BmsI	GCATC	3 cut(s)	257, 511, 523
Bpu10I	CCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	2 cut(s)	282, 1073
BsaBI	GATNNNNATC	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	125, 159, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	238
Bse21I	CCTNAGG	2 cut(s)	628, 774
Bse8I	GATNNNNATC	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	26, 483
BseDI	CCNNGG	3 cut(s)	125, 159, 375
BseGI	GGATG	3 cut(s)	371, 795, 1232
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	7 cut(s)	438, 549, 611, 642, 776, 879, 932
BseXI	GCAGC	3 cut(s)	225, 344, 1120
BshFI	GGCC	2 cut(s)	196, 339
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	3 cut(s)	300, 538, 618
BsmFI	GGGAC	1 cut(s)	819
BsnI	GGCC	2 cut(s)	196, 339
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	64, 163, 712
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	1084
BspANI	GGCC	2 cut(s)	196, 339
BspCNI	CTCAG	7 cut(s)	439, 548, 610, 641, 777, 880, 931
BspMAI	CTGCAG	2 cut(s)	877, 1110
BspMI	ACCTGC	1 cut(s)	1113
BspPI	GGATC	2 cut(s)	59, 171
BspTNI	GGTCTC	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	1084
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	125, 159, 375
BssMI	GATC	3 cut(s)	64, 163, 712
BssSI	CACGAG	1 cut(s)	719
BssT1I	CCWWGG	2 cut(s)	125, 159
Bst2BI	CACGAG	1 cut(s)	719
Bst2UI	CCWGG	2 cut(s)	26, 483
Bst4CI	ACNGT	3 cut(s)	327, 637, 1059
BstC8I	GCNNGC	3 cut(s)	198, 603, 977
BstDEI	CTNAG	8 cut(s)	447, 535, 597, 628, 774, 785, 888, 918
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	371, 795, 1232
BstHHI	GCGC	1 cut(s)	1065
BstKTI	GATC	3 cut(s)	67, 166, 715
BstMAI	GTCTC	3 cut(s)	300, 538, 618
BstMBI	GATC	3 cut(s)	64, 163, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 607, 764
BstNI	CCWGG	2 cut(s)	26, 483
BstNSI	RCATGY	2 cut(s)	1132, 1161
BstSCI	CCNGG	2 cut(s)	24, 481
BstSFI	CTRYAG	2 cut(s)	873, 1106
BstV1I	GCAGC	3 cut(s)	225, 344, 1120
BstX2I	RGATCY	1 cut(s)	712
BstXI	CCANNNNNNTGG	1 cut(s)	1169
BstYI	RGATCY	1 cut(s)	712
Bsu36I	CCTNAGG	2 cut(s)	628, 774
BsuRI	GGCC	2 cut(s)	196, 339
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	371, 795, 1232
BtsI	GCAGTG	2 cut(s)	976, 992
BtsIMutI	CAGTG	2 cut(s)	976, 992
BveI	ACCTGC	1 cut(s)	1113
Cac8I	GCNNGC	3 cut(s)	198, 603, 977
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	1 cut(s)	1065
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	194, 1172
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	7 cut(s)	133, 160, 271, 821, 1129, 1158, 1163
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	8 cut(s)	447, 535, 597, 628, 774, 785, 888, 918
DpnI	GATC	3 cut(s)	66, 165, 714
DpnII	GATC	3 cut(s)	64, 163, 712
Eco130I	CCWWGG	2 cut(s)	125, 159
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	1172
Eco57I	CTGAAG	3 cut(s)	131, 318, 1227
Eco81I	CCTNAGG	2 cut(s)	628, 774
Eco88I	CYCGRG	1 cut(s)	682
EcoRI	GAATTC	1 cut(s)	1219
EcoRII	CCWGG	2 cut(s)	24, 481
EcoT14I	CCWWGG	2 cut(s)	125, 159
EcoT22I	ATGCAT	2 cut(s)	272, 516
ErhI	CCWWGG	2 cut(s)	125, 159
FaeI	CATG	7 cut(s)	136, 163, 274, 824, 1132, 1161, 1166
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	7 cut(s)	132, 159, 270, 820, 1128, 1157, 1162
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	4 cut(s)	214, 358, 1085, 1109
FokI	GGATG	3 cut(s)	358, 802, 1219
Fsp4HI	GCNGC	4 cut(s)	214, 358, 1085, 1109
FspBI	CTAG	2 cut(s)	1007, 1037
FspI	TGCGCA	1 cut(s)	1064
GlaI	GCGC	1 cut(s)	1064
GluI	GCNGC	4 cut(s)	214, 358, 1085, 1109
HaeIII	GGCC	2 cut(s)	196, 339
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	1065
Hin1II	CATG	7 cut(s)	136, 163, 274, 824, 1132, 1161, 1166
Hin6I	GCGC	1 cut(s)	1063
HinP1I	GCGC	1 cut(s)	1063
HinfI	GANTC	9 cut(s)	233, 293, 368, 656, 706, 849, 869, 1042, 1138
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	4 cut(s)	89, 198, 228, 665
Hpy188I	TCNGA	5 cut(s)	376, 386, 448, 889, 1180
HpyAV	CCTTC	5 cut(s)	291, 342, 872, 946, 1202
HpyCH4III	ACNGT	3 cut(s)	327, 637, 1059
HpyCH4IV	ACGT	1 cut(s)	1146
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 607, 764
HpyF3I	CTNAG	8 cut(s)	447, 535, 597, 628, 774, 785, 888, 918
HpySE526I	ACGT	1 cut(s)	1146
Hsp92II	CATG	7 cut(s)	136, 163, 274, 824, 1132, 1161, 1166
HspAI	GCGC	1 cut(s)	1063
Kzo9I	GATC	3 cut(s)	64, 163, 712
LmnI	GCTCC	1 cut(s)	1081
Lsp1109I	GCAGC	3 cut(s)	225, 344, 1120
LweI	GCATC	3 cut(s)	257, 511, 523
MaeI	CTAG	2 cut(s)	1007, 1037
MaeII	ACGT	1 cut(s)	1146
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	66, 165, 714
MbiI	CCGCTC	1 cut(s)	1084
MboI	GATC	3 cut(s)	64, 163, 712
MboII	GAAGA	5 cut(s)	84, 651, 654, 707, 1082
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	712
MluCI	AATT	6 cut(s)	57, 402, 958, 1051, 1188, 1219
MlyI	GAGTC	3 cut(s)	302, 863, 1132
Mph1103I	ATGCAT	2 cut(s)	272, 516
MroXI	GAANNNNTTC	2 cut(s)	637, 935
MseI	TTAA	1 cut(s)	1133
MslI	CAYNNNNRTG	3 cut(s)	48, 948, 1167
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	26, 483
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	26, 483
MwoI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 607, 764
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	3 cut(s)	64, 163, 712
NlaIII	CATG	7 cut(s)	136, 163, 274, 824, 1132, 1161, 1166
NsbI	TGCGCA	1 cut(s)	1064
NsiI	ATGCAT	2 cut(s)	272, 516
NspI	RCATGY	2 cut(s)	1132, 1161
PaeR7I	CTCGAG	1 cut(s)	682
PciI	ACATGT	1 cut(s)	1128
PdmI	GAANNNNTTC	2 cut(s)	637, 935
PfeI	GAWTC	6 cut(s)	233, 368, 656, 706, 849, 1042
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	215, 359, 1086, 1110
PleI	GAGTC	3 cut(s)	301, 863, 1132
PpsI	GAGTC	3 cut(s)	301, 863, 1132
PscI	ACATGT	1 cut(s)	1128
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	24, 481
PspGI	CCWGG	2 cut(s)	24, 481
PspPI	GGNCC	2 cut(s)	194, 1172
PstI	CTGCAG	2 cut(s)	877, 1110
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	3 cut(s)	48, 948, 1167
SaqAI	TTAA	1 cut(s)	1133
SatI	GCNGC	4 cut(s)	214, 358, 1085, 1109
Sau3AI	GATC	3 cut(s)	64, 163, 712
Sau96I	GGNCC	2 cut(s)	194, 1172
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	3 cut(s)	302, 863, 1132
ScrFI	CCNGG	2 cut(s)	26, 483
SfaNI	GCATC	3 cut(s)	257, 511, 523
SfcI	CTRYAG	2 cut(s)	873, 1106
Sfr274I	CTCGAG	1 cut(s)	682
SinI	GGWCC	1 cut(s)	1172
SlaI	CTCGAG	1 cut(s)	682
SmiMI	CAYNNNNRTG	3 cut(s)	48, 948, 1167
SmlI	CTYRAG	3 cut(s)	297, 682, 1088
SmoI	CTYRAG	3 cut(s)	297, 682, 1088
Sse9I	AATT	6 cut(s)	57, 402, 958, 1051, 1188, 1219
SsiI	CCGC	1 cut(s)	1084
SspI	AATATT	2 cut(s)	190, 860
SspMI	CTAG	2 cut(s)	1007, 1037
StyD4I	CCNGG	2 cut(s)	24, 481
StyI	CCWWGG	2 cut(s)	125, 159
TaaI	ACNGT	3 cut(s)	327, 637, 1059
TaiI	ACGT	1 cut(s)	1149
TaqI	TCGA	3 cut(s)	683, 847, 912
TasI	AATT	6 cut(s)	57, 402, 958, 1051, 1188, 1219
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	1087
TfiI	GAWTC	6 cut(s)	233, 368, 656, 706, 849, 1042
Tru1I	TTAA	1 cut(s)	1133
Tru9I	TTAA	1 cut(s)	1133
TscAI	CASTG	2 cut(s)	976, 999
TseI	GCWGC	3 cut(s)	213, 357, 1108
TspDTI	ATGAA	4 cut(s)	17, 809, 1179, 1200
TspRI	CASTG	2 cut(s)	976, 999
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	1172
XapI	RAATTY	4 cut(s)	958, 1051, 1188, 1219
XceI	RCATGY	2 cut(s)	1132, 1161
XhoI	CTCGAG	1 cut(s)	682
XmnI	GAANNNNTTC	2 cut(s)	637, 935
XspI	CTAG	2 cut(s)	1007, 1037
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	2 cut(s)	272, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.