Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

6207889 .. 6209902

Gene Structure 2014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1059400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGAATGAGAAGAAGACAGATTGCCAAGAAATAAATCAACAAAGCCATGAATTAATCAGTGAGTGCAATTTTGAAGTTGGTAATCAGTCGTATCAAATTTTTGGTCAGCAGCAACAACAGGCTTGGAACAACATGGGAATTTGGGTTCAGCAACCCACCATGGATCATGGAGTGTCACTGCTTCAAAATCTTGGGCCTCCGGATCCTAAATCTCCCAGCAGCATTACGAGCCGCTTCGAATCTCTGGCTTCTACTTTTTATGCAACTGAACGCTGTATGGGAGGGTTTCCACAGTATGACTCTCAAGTTGGTAATAATCCTCATTTCCCTTCAGGTCAATCTTATAATGAAAGCTACAGCTCCATGAATTCATCCGAGCAAACTGATCTGGATTTCGACATCAGAAACACTTTGCAGTCGATTGTGAAAACTCAACCCCGCAGCTATCAATACCATAAATCCTCAGAGAAGTTTAACCAAATCCCGGGAAGCGATTTGTCAGGCAGTAAGCTCTTTGCACATCAATCAAATAAGTTGCATGGAGATCATAAAACTACTACAATTAGAAGACCGTCCTTATCCCTTCCTTCTAAAGAAAATCAGGATCAAGGCTGTTATACTTCATTCAATACTTCCCCGGTAACTCAACCGAGCTTCTTTTCTCAACAAGGAAAGCAGTCGCCAAGATATTCCTCCGGAAATGTTTCCACTGCATATGGTAATTCCCCTTCAACTAGCCCTGTACTCTCCAGTAAAACACGAATTCGTTGGAATCAAGATCTTCACGAAAAGTTCATTGAGTGTGTAAATCGTCTTGGGGGTGCTGAAAAAGCAACACCGAAGGCAATACTGAAGATGATGTGTTTGGATGGATTAACCATCTTTCATGTTAAAAGTCACCTGCAGAAATATCGAATTGCGAAATATCTACCATACCCTGCCGAAGGAAAATCTGAGAAAAGGACTACTTTGAATCTTGAACCCCATCTCGATGTGAAAACTGGCTTGCAAATCAAAGAGGCGCTCCAACTGCAATTAGATGTTCAGCGGCGTCTTCACGAACAGTTGGAGATTCAACGAAAGTTGCGGCTACGAATTGAAGAACAAGGAAAGCAGTTCAAGGAGATGTTTGATCTGCAACAACAAACAAGTAGTAGCTTGTTGAAGACTCAGAACGCGGACGTCACATGCCATGAAGCTGGCCCATCAAATAGTCTCGACGATACTGATCAGGTTTCAACTTCTGAAGGTTCTGGGAATACAAGTTTTCACTCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

429

Amino Acids

48.29

Weight (kDa)

7.66

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	256 - 305	3.2e-07	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	336 - 383	3.3e-17	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AarI	CACCTGC	1 cut(s)	909
AatII	GACGTC	1 cut(s)	1185
Acc36I	ACCTGC	1 cut(s)	909
AccII	CGCG	1 cut(s)	1178
AccIII	TCCGGA	2 cut(s)	199, 695
AciI	CCGC	5 cut(s)	232, 439, 1048, 1087, 1178
AclWI	GGATC	4 cut(s)	171, 197, 210, 612
AcsI	RAATTY	4 cut(s)	96, 138, 367, 762
AcuI	CTGAAG	3 cut(s)	315, 872, 1266
AcyI	GRCGYC	2 cut(s)	1051, 1182
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	2 cut(s)	484, 944
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	7 cut(s)	354, 360, 444, 511, 654, 1158, 1199
AluI	AGCT	7 cut(s)	354, 360, 444, 511, 654, 1158, 1199
Alw26I	GTCTC	1 cut(s)	1220
AlwI	GGATC	4 cut(s)	171, 197, 210, 612
Ama87I	CYCGRG	1 cut(s)	484
Aor13HI	TCCGGA	2 cut(s)	199, 695
AoxI	GGCC	2 cut(s)	194, 1201
ApeKI	GCWGC	3 cut(s)	109, 219, 441
ApoI	RAATTY	4 cut(s)	96, 138, 367, 762
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AseI	ATTAAT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	1024
AspS9I	GGNCC	2 cut(s)	194, 1202
AsuC2I	CCSGG	3 cut(s)	485, 486, 638
AsuHPI	GGTGA	1 cut(s)	890
AsuII	TTCGAA	1 cut(s)	237
AvaI	CYCGRG	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	202
BarI	GAAGNNNNNNTAC	2 cut(s)	712, 744
BbsI	GAAGAC	4 cut(s)	20, 574, 1046, 1172
BbvI	GCAGC	3 cut(s)	121, 231, 453
BccI	CCATC	4 cut(s)	863, 887, 993, 1213
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BclI	TGATCA	1 cut(s)	1228
BcnI	CCSGG	3 cut(s)	485, 486, 638
BcoDI	GTCTC	1 cut(s)	1220
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	2 cut(s)	355, 902
BfoI	RGCGCY	1 cut(s)	1025
BfuAI	ACCTGC	1 cut(s)	909
BglII	AGATCT	1 cut(s)	778
BisI	GCNGC	6 cut(s)	110, 220, 232, 442, 1049, 1088
BlsI	GCNGC	6 cut(s)	111, 221, 233, 443, 1050, 1089
Bme1390I	CCNGG	3 cut(s)	485, 486, 638
BmeT110I	CYCGRG	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	194, 1202
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	3 cut(s)	485, 486, 638
BpiI	GAAGAC	4 cut(s)	20, 574, 1046, 1172
BpmI	CTGGAG	1 cut(s)	733
Bpu14I	TTCGAA	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	3 cut(s)	485, 486, 638
BsaBI	GATNNNNATC	1 cut(s)	1227
BsaHI	GRCGYC	2 cut(s)	1051, 1182
BsaJI	CCNNGG	3 cut(s)	159, 484, 636
BsaWI	WCCGGW	2 cut(s)	199, 695
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 944
Bse1I	ACTGG	2 cut(s)	750, 1006
Bse8I	GATNNNNATC	1 cut(s)	1227
BseAI	TCCGGA	2 cut(s)	199, 695
BseDI	CCNNGG	3 cut(s)	159, 484, 636
BseGI	GGATG	2 cut(s)	371, 874
BseJI	GATNNNNATC	1 cut(s)	1227
BseLI	CCNNNNNNNGG	2 cut(s)	484, 944
BseMII	CTCAG	3 cut(s)	477, 945, 1184
BseNI	ACTGG	2 cut(s)	750, 1006
BseXI	GCAGC	3 cut(s)	121, 231, 453
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	1178
BshFI	GGCC	2 cut(s)	196, 1203
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	4 cut(s)	200, 485, 638, 696
BslI	CCNNNNNNNGG	2 cut(s)	484, 944
BsmAI	GTCTC	1 cut(s)	1220
BsnI	GGCC	2 cut(s)	196, 1203
BsoBI	CYCGRG	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	237
Bsp13I	TCCGGA	2 cut(s)	199, 695
Bsp143I	GATC	8 cut(s)	163, 202, 385, 544, 604, 778, 1132, 1228
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	5 cut(s)	232, 439, 1048, 1087, 1178
BspANI	GGCC	2 cut(s)	196, 1203
BspCNI	CTCAG	3 cut(s)	476, 946, 1183
BspEI	TCCGGA	2 cut(s)	199, 695
BspFNI	CGCG	1 cut(s)	1178
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	906
BspMI	ACCTGC	1 cut(s)	909
BspPI	GGATC	4 cut(s)	171, 197, 210, 612
BspT104I	TTCGAA	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	750, 1006
BssECI	CCNNGG	3 cut(s)	159, 484, 636
BssMI	GATC	8 cut(s)	163, 202, 385, 544, 604, 778, 1132, 1228
BssNI	GRCGYC	2 cut(s)	1051, 1182
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	294, 573, 1065
BstACI	GRCGYC	2 cut(s)	1051, 1182
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	1007, 1201
BstDEI	CTNAG	3 cut(s)	463, 954, 1170
BstDSI	CCRYGG	1 cut(s)	159
BstENI	CCTNNNNNAGG	1 cut(s)	942
BstF5I	GGATG	2 cut(s)	371, 874
BstFNI	CGCG	1 cut(s)	1178
BstH2I	RGCGCY	1 cut(s)	1025
BstHHI	GCGC	1 cut(s)	1024
BstKTI	GATC	8 cut(s)	166, 205, 388, 547, 607, 781, 1135, 1231
BstMAI	GTCTC	1 cut(s)	1220
BstMBI	GATC	8 cut(s)	163, 202, 385, 544, 604, 778, 1132, 1228
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 830, 1030
BstNSI	RCATGY	1 cut(s)	1191
BstSCI	CCNGG	3 cut(s)	483, 484, 636
BstSFI	CTRYAG	2 cut(s)	355, 902
BstUI	CGCG	1 cut(s)	1178
BstV1I	GCAGC	3 cut(s)	121, 231, 453
BstV2I	GAAGAC	4 cut(s)	20, 574, 1046, 1172
BstX2I	RGATCY	2 cut(s)	202, 778
BstXI	CCANNNNNNTGG	1 cut(s)	1199
BstYI	RGATCY	2 cut(s)	202, 778
BsuRI	GGCC	2 cut(s)	196, 1203
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	371, 874
BtsI	GCAGTG	2 cut(s)	176, 708
BtsIMutI	CAGTG	3 cut(s)	64, 176, 708
BveI	ACCTGC	1 cut(s)	909
Cac8I	GCNNGC	2 cut(s)	1007, 1201
CfoI	GCGC	1 cut(s)	1024
Cfr13I	GGNCC	2 cut(s)	194, 1202
Cfr9I	CCCGGG	1 cut(s)	484
CseI	GACGC	1 cut(s)	1040
Csp6I	GTAC	1 cut(s)	743
CviAII	CATG	9 cut(s)	47, 133, 160, 167, 364, 539, 887, 1188, 1193
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	3 cut(s)	463, 954, 1170
DpnI	GATC	8 cut(s)	165, 204, 387, 546, 606, 780, 1134, 1230
DpnII	GATC	8 cut(s)	163, 202, 385, 544, 604, 778, 1132, 1228
Eco130I	CCWWGG	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	315, 872, 1266
Eco88I	CYCGRG	1 cut(s)	484
EcoNI	CCTNNNNNAGG	1 cut(s)	942
EcoRI	GAATTC	2 cut(s)	367, 762
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	9 cut(s)	50, 136, 163, 170, 367, 542, 890, 1191, 1196
FalI	AAGNNNNNCTT	2 cut(s)	952, 984
FatI	CATG	9 cut(s)	46, 132, 159, 166, 363, 538, 886, 1187, 1192
FauI	CCCGC	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	1228
Fnu4HI	GCNGC	6 cut(s)	110, 220, 232, 442, 1049, 1088
FokI	GGATG	2 cut(s)	358, 881
Fsp4HI	GCNGC	6 cut(s)	110, 220, 232, 442, 1049, 1088
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	1 cut(s)	1023
GluI	GCNGC	6 cut(s)	110, 220, 232, 442, 1049, 1088
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	733
HaeII	RGCGCY	1 cut(s)	1025
HaeIII	GGCC	2 cut(s)	196, 1203
HapII	CCGG	4 cut(s)	200, 485, 638, 696
HgaI	GACGC	1 cut(s)	1040
HhaI	GCGC	1 cut(s)	1024
Hin1I	GRCGYC	2 cut(s)	1051, 1182
Hin1II	CATG	9 cut(s)	50, 136, 163, 170, 367, 542, 890, 1191, 1196
Hin6I	GCGC	1 cut(s)	1022
HinP1I	GCGC	1 cut(s)	1022
HinfI	GANTC	6 cut(s)	239, 299, 772, 973, 1072, 1168
HpaII	CCGG	4 cut(s)	200, 485, 638, 696
HphI	GGTGA	1 cut(s)	890
Hpy188I	TCNGA	6 cut(s)	376, 404, 466, 955, 1173, 1246
Hpy99I	CGWCG	1 cut(s)	1223
HpyAV	CCTTC	7 cut(s)	339, 593, 597, 738, 835, 938, 1241
HpyCH4III	ACNGT	3 cut(s)	294, 573, 1065
HpyCH4IV	ACGT	1 cut(s)	1182
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 830, 1030
HpyF3I	CTNAG	3 cut(s)	463, 954, 1170
HpySE526I	ACGT	1 cut(s)	1182
Hsp92I	GRCGYC	2 cut(s)	1051, 1182
Hsp92II	CATG	9 cut(s)	50, 136, 163, 170, 367, 542, 890, 1191, 1196
HspAI	GCGC	1 cut(s)	1022
Kpn2I	TCCGGA	2 cut(s)	199, 695
Ksp22I	TGATCA	1 cut(s)	1228
Kzo9I	GATC	8 cut(s)	163, 202, 385, 544, 604, 778, 1132, 1228
LmnI	GCTCC	2 cut(s)	365, 1029
Lsp1109I	GCAGC	3 cut(s)	121, 231, 453
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	1 cut(s)	1182
MaeIII	GTNAC	4 cut(s)	174, 640, 896, 1183
MalI	GATC	8 cut(s)	165, 204, 387, 546, 606, 780, 1134, 1230
MboI	GATC	8 cut(s)	163, 202, 385, 544, 604, 778, 1132, 1228
MboII	GAAGA	8 cut(s)	22, 25, 579, 773, 865, 1046, 1112, 1177
MflI	RGATCY	2 cut(s)	202, 778
MlyI	GAGTC	2 cut(s)	293, 1162
MmeI	TCCRAC	3 cut(s)	749, 1047, 1051
MnlI	CCTC	6 cut(s)	207, 275, 330, 472, 703, 1012
MroI	TCCGGA	2 cut(s)	199, 695
MroXI	GAANNNNTTC	1 cut(s)	703
MseI	TTAA	4 cut(s)	53, 474, 875, 891
MslI	CAYNNNNRTG	1 cut(s)	990
MspA1I	CMGCKG	1 cut(s)	1048
MspI	CCGG	4 cut(s)	200, 485, 638, 696
MspR9I	CCNGG	3 cut(s)	485, 486, 638
MvnI	CGCG	1 cut(s)	1178
MwoI	GCNNNNNNNGC	3 cut(s)	228, 830, 1030
NciI	CCSGG	3 cut(s)	485, 486, 638
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	8 cut(s)	163, 202, 385, 544, 604, 778, 1132, 1228
NlaIII	CATG	9 cut(s)	50, 136, 163, 170, 367, 542, 890, 1191, 1196
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	3 cut(s)	174, 896, 1183
NspI	RCATGY	1 cut(s)	1191
NspV	TTCGAA	1 cut(s)	237
PaqCI	CACCTGC	1 cut(s)	909
PdmI	GAANNNNTTC	1 cut(s)	703
PfeI	GAWTC	4 cut(s)	239, 772, 973, 1072
PkrI	GCNGC	6 cut(s)	111, 221, 233, 443, 1050, 1089
PleI	GAGTC	2 cut(s)	293, 1162
PpsI	GAGTC	2 cut(s)	293, 1162
PshBI	ATTAAT	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	194, 1202
PstI	CTGCAG	1 cut(s)	906
PsuI	RGATCY	2 cut(s)	202, 778
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	1 cut(s)	990
SaqAI	TTAA	4 cut(s)	53, 474, 875, 891
SatI	GCNGC	6 cut(s)	110, 220, 232, 442, 1049, 1088
Sau3AI	GATC	8 cut(s)	163, 202, 385, 544, 604, 778, 1132, 1228
Sau96I	GGNCC	2 cut(s)	194, 1202
SchI	GAGTC	2 cut(s)	293, 1162
ScrFI	CCNGG	3 cut(s)	485, 486, 638
SfcI	CTRYAG	2 cut(s)	355, 902
SfuI	TTCGAA	1 cut(s)	237
SmaI	CCCGGG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	990
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SsiI	CCGC	5 cut(s)	232, 439, 1048, 1087, 1178
SspMI	CTAG	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	483, 484, 636
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	294, 573, 1065
TaiI	ACGT	1 cut(s)	1185
TaqI	TCGA	6 cut(s)	237, 396, 419, 913, 990, 1218
TatI	WGTACW	1 cut(s)	742
TauI	GCSGC	3 cut(s)	234, 1051, 1090
TfiI	GAWTC	4 cut(s)	239, 772, 973, 1072
Tru1I	TTAA	4 cut(s)	53, 474, 875, 891
Tru9I	TTAA	4 cut(s)	53, 474, 875, 891
TscAI	CASTG	3 cut(s)	64, 183, 715
TseFI	GTSAC	3 cut(s)	174, 896, 1183
TseI	GCWGC	3 cut(s)	109, 219, 441
Tsp45I	GTSAC	3 cut(s)	174, 896, 1183
TspDTI	ATGAA	9 cut(s)	17, 63, 360, 363, 380, 612, 784, 875, 1209
TspMI	CCCGGG	1 cut(s)	484
TspRI	CASTG	3 cut(s)	64, 183, 715
VspI	ATTAAT	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	942
XapI	RAATTY	4 cut(s)	96, 138, 367, 762
XceI	RCATGY	1 cut(s)	1191
XmaI	CCCGGG	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	703
XspI	CTAG	1 cut(s)	735
ZraI	GACGTC	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.