Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Reverse (-)

11224849 .. 11225563

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G075200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAAACATTTGACATTCAGTTTGATATTCTTCTTTCCTTTCCTTTTGATGTGAACTTTTCTGGTAGTGGCTTGCATATCAAGGAGGCGCTCCAACTGCAGCTAGATGCCCAGAGACGTCTTCATGAACAATTAGAGATTCAACGAAATTTACAGCTGCGAATTGAAGAACAAGGGAAGCAGCTCAAGAAGATGTTTGATCTGCAACAAAAAACAAGTAATGACCTGTTTAAGACTCAGAACTTGGACATCACATGCCATGAAGATGCCCCATCAGATAGTCTAAATGCCATTCAGGTCTCAAGCCCTGAAGATTCTGGGAATAGCAATTTCCCATCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

117

Amino Acids

13.29

Weight (kDa)

4.78

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	143, 167
AluBI	AGCT	3 cut(s)	103, 157, 184
AluI	AGCT	3 cut(s)	103, 157, 184
Alw26I	GTCTC	2 cut(s)	109, 304
ApeKI	GCWGC	3 cut(s)	100, 157, 181
ApoI	RAATTY	1 cut(s)	148
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	3 cut(s)	112, 144, 193
BccI	CCATC	2 cut(s)	280, 343
BcoDI	GTCTC	2 cut(s)	109, 304
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	92
BisI	GCNGC	3 cut(s)	101, 158, 182
BlsI	GCNGC	3 cut(s)	102, 159, 183
BmsI	GCATC	2 cut(s)	97, 256
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	2 cut(s)	170, 286
BsaHI	GRCGYC	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	304
BseGI	GGATG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	112, 144, 193
BsmAI	GTCTC	2 cut(s)	109, 304
BsmBI	CGTCTC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	304
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	109, 304
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	112, 144, 193
BstV2I	GAAGAC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	74
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	1 cut(s)	91
CviAII	CATG	3 cut(s)	125, 255, 260
CviJI	RGCY	5 cut(s)	72, 103, 157, 184, 306
CviKI_1	RGCY	5 cut(s)	72, 103, 157, 184, 306
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	3 cut(s)	128, 258, 263
FaiI	YATR	4 cut(s)	78, 126, 256, 261
FatI	CATG	3 cut(s)	124, 254, 259
Fnu4HI	GCNGC	3 cut(s)	101, 158, 182
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	3 cut(s)	101, 158, 182
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	101, 158, 182
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	128, 258, 263
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	3 cut(s)	139, 235, 314
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	240, 277
Hpy188III	TCNNGA	2 cut(s)	125, 187
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	76, 100, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	118
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	128, 258, 263
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	6 cut(s)	48, 125, 239, 281, 303, 321
Lsp1109I	GCAGC	3 cut(s)	112, 144, 193
LweI	GCATC	2 cut(s)	97, 256
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	118
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	6 cut(s)	23, 113, 179, 202, 275, 323
MluCI	AATT	4 cut(s)	131, 148, 162, 328
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	1 cut(s)	79
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	128, 258, 263
NspI	RCATGY	1 cut(s)	258
PagI	TCATGA	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	139, 314
PkrI	GCNGC	3 cut(s)	102, 159, 183
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	101, 158, 182
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	229
SetI	ASST	6 cut(s)	105, 121, 159, 186, 228, 300
SfaNI	GCATC	2 cut(s)	97, 256
SfcI	CTRYAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	185, 301
SmoI	CTYRAG	2 cut(s)	185, 301
Sse9I	AATT	4 cut(s)	131, 148, 162, 328
SspMI	CTAG	1 cut(s)	104
TaiI	ACGT	1 cut(s)	121
TasI	AATT	4 cut(s)	131, 148, 162, 328
TfiI	GAWTC	2 cut(s)	139, 314
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	3 cut(s)	100, 157, 181
TspDTI	ATGAA	3 cut(s)	113, 141, 276
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	258
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.