Rorug03G0179800
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006880
Physical Location & Seq
Reverse (-)
15389912 .. 15390514
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0179800.1

Sequence Viewer

Length: 603 bp
ATGGCCACCATTGAAGACATGACGGCGAGCTTCACTTCCTCTCTTGCGCTGGCAGGGGATGATGTGGTGGACATGGCCAAATTGGTCGCAGGACCGGTGCAGCGTACTTCTCAAGCGTTTCTTCTGGGACGCTTTCTGACCACAAAGACGGTGGCTCTCAAGGACGTGCGCCGCCACTTTCGGCGTGTGTGGATGCTGGAGAAGGGATTCCAGATTCAGGAAAAACCACAGGACCGTTTCCTTTTCTGTTTTGACGATCGTGGGGATTGCAGAAAGGTCTTGAAGGGAGGAGCCTGGAATCTTAACCGAGCTACTTTGATCCTGCAGGATTATGATGGCGCCACCTCAATCAACAAAGTGGATCTGTCGTCGATCATATATTGGGTACGTATTACCAATATTCCACCTTTGTTTGAGACTAAGGAGAATATTATGAAAATAGCATCTATGGCTGGGAAATATCTTGATATGGATGAGAAGCTTTTTAAGTATGAAAGGGAGATTAGGGTTAGGGTTTCGCATGATATCTCTAAGCCTTTTTTTTCTAACAAAAACAATGAGGTTGGGTCCAGGCATCGAGGAGGAGATCCATTTTTTCTTTGA

Protein Analysis

200

Amino Acids

22.96

Weight (kDa)

9.36

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 38 - 112 7e-13 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AciI CCGC 1 cut(s) 172
AclWI GGATC 3 cut(s) 313, 369, 581
AcoI YGGCCR 2 cut(s) 3, 75
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 2 cut(s) 106, 387
AfiI CCNNNNNNNGG 1 cut(s) 217
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 2 cut(s) 14, 283
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 2 cut(s) 293, 569
AluBI AGCT 3 cut(s) 30, 311, 481
AluI AGCT 3 cut(s) 30, 311, 481
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 3 cut(s) 313, 369, 581
AoxI GGCC 2 cut(s) 3, 75
ApeKI GCWGC 1 cut(s) 100
AsiGI ACCGGT 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 3 cut(s) 49, 171, 341
AspS9I GGNCC 3 cut(s) 92, 232, 567
AvaII GGWCC 3 cut(s) 92, 232, 567
BalI TGGCCA 2 cut(s) 5, 77
BanI GGYRCC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 295, 571
BcoDI GTCTC 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 2 cut(s) 101, 172
BlsI GCNGC 2 cut(s) 102, 173
Bme1390I CCNGG 2 cut(s) 295, 571
Bme18I GGWCC 3 cut(s) 92, 232, 567
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 92, 232, 567
BmiI GGNNCC 3 cut(s) 292, 340, 568
BmrFI CCNGG 2 cut(s) 295, 571
BmsI GCATC 3 cut(s) 183, 452, 583
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 218
BpuEI CTTGAG 2 cut(s) 96, 143
BsaAI YACGTR 1 cut(s) 389
BsaHI GRCGYC 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 94
BseBI CCWGG 2 cut(s) 295, 571
BseGI GGATG 3 cut(s) 64, 198, 478
BseLI CCNNNNNNNGG 1 cut(s) 217
BseRI GAGGAG 3 cut(s) 303, 594, 597
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 5, 77
BshNI GGYRCC 1 cut(s) 338
BshTI ACCGGT 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 259
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 2 cut(s) 5, 77
Bsp143I GATC 5 cut(s) 256, 318, 361, 372, 586
BspACI CCGC 1 cut(s) 172
BspANI GGCC 2 cut(s) 5, 77
BspLI GGNNCC 3 cut(s) 292, 340, 568
BspMAI CTGCAG 1 cut(s) 327
BspPI GGATC 3 cut(s) 313, 369, 581
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 5 cut(s) 256, 318, 361, 372, 586
BssNI GRCGYC 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 295, 571
Bst4CI ACNGT 2 cut(s) 151, 236
BstACI GRCGYC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 28, 51
BstDEI CTNAG 2 cut(s) 420, 531
BstF5I GGATG 3 cut(s) 64, 198, 478
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 3 cut(s) 49, 171, 341
BstKTI GATC 5 cut(s) 259, 321, 364, 375, 589
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 5 cut(s) 256, 318, 361, 372, 586
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 2 cut(s) 295, 571
BstSCI CCNGG 2 cut(s) 293, 569
BstSFI CTRYAG 1 cut(s) 323
BstSNI TACGTA 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 361, 586
BstYI RGATCY 2 cut(s) 361, 586
BsuRI GGCC 2 cut(s) 5, 77
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 3 cut(s) 64, 198, 478
Cac8I GCNNGC 2 cut(s) 28, 51
CfoI GCGC 3 cut(s) 49, 171, 341
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 3 cut(s) 92, 232, 567
CseI GACGC 1 cut(s) 138
Csp6I GTAC 2 cut(s) 105, 386
CspAI ACCGGT 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 3 cut(s) 19, 73, 521
CviJI RGCY 9 cut(s) 5, 30, 77, 155, 293, 311, 452, 481, 535
CviKI_1 RGCY 9 cut(s) 5, 30, 77, 155, 293, 311, 452, 481, 535
CviQI GTAC 2 cut(s) 105, 386
DdeI CTNAG 2 cut(s) 420, 531
DinI GGCGCC 1 cut(s) 340
DpnI GATC 5 cut(s) 258, 320, 363, 374, 588
DpnII GATC 5 cut(s) 256, 318, 361, 372, 586
EaeI YGGCCR 2 cut(s) 3, 75
Eco105I TACGTA 1 cut(s) 389
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 3 cut(s) 92, 232, 567
EcoRII CCWGG 2 cut(s) 293, 569
EcoRV GATATC 1 cut(s) 526
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
FaeI CATG 3 cut(s) 22, 76, 524
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 141
FatI CATG 3 cut(s) 18, 72, 520
Fnu4HI GCNGC 2 cut(s) 101, 172
FokI GGATG 3 cut(s) 71, 205, 485
Fsp4HI GCNGC 2 cut(s) 101, 172
GlaI GCGC 3 cut(s) 48, 170, 340
GluI GCNGC 2 cut(s) 101, 172
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 2 cut(s) 5, 77
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 138
HhaI GCGC 3 cut(s) 49, 171, 341
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 3 cut(s) 22, 76, 524
Hin6I GCGC 3 cut(s) 47, 169, 339
HinP1I GCGC 3 cut(s) 47, 169, 339
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 3 cut(s) 207, 214, 298
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 4 cut(s) 211, 218, 280, 464
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 196, 277
HpyCH4III ACNGT 2 cut(s) 151, 236
HpyCH4IV ACGT 2 cut(s) 165, 388
HpyCH4V TGCA 3 cut(s) 100, 270, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 2 cut(s) 420, 531
HpySE526I ACGT 2 cut(s) 165, 388
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 3 cut(s) 22, 76, 524
HspAI GCGC 3 cut(s) 47, 169, 339
KasI GGCGCC 1 cut(s) 338
Kzo9I GATC 5 cut(s) 256, 318, 361, 372, 586
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 3 cut(s) 183, 452, 583
MaeII ACGT 2 cut(s) 165, 388
MalI GATC 5 cut(s) 258, 320, 363, 374, 588
MboI GATC 5 cut(s) 256, 318, 361, 372, 586
MboII GAAGA 2 cut(s) 26, 113
MflI RGATCY 2 cut(s) 361, 586
MlsI TGGCCA 2 cut(s) 5, 77
MluCI AATT 1 cut(s) 80
MluNI TGGCCA 2 cut(s) 5, 77
Mly113I GGCGCC 1 cut(s) 339
MnlI CCTC 6 cut(s) 49, 281, 355, 553, 572, 575
Mox20I TGGCCA 2 cut(s) 5, 77
MroXI GAANNNNTTC 1 cut(s) 206
MscI TGGCCA 2 cut(s) 5, 77
MseI TTAA 2 cut(s) 303, 486
Msp20I TGGCCA 2 cut(s) 5, 77
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 295, 571
MvaI CCWGG 2 cut(s) 295, 571
MwoI GCNNNNNNNGC 1 cut(s) 449
NarI GGCGCC 1 cut(s) 339
NdeII GATC 5 cut(s) 256, 318, 361, 372, 586
NlaIII CATG 3 cut(s) 22, 76, 524
NlaIV GGNNCC 3 cut(s) 292, 340, 568
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 207, 214, 298
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 2 cut(s) 102, 173
Ple19I CGATCG 1 cut(s) 259
PluTI GGCGCC 1 cut(s) 342
Ppu21I YACGTR 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 293, 569
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 2 cut(s) 293, 569
PspN4I GGNNCC 3 cut(s) 292, 340, 568
PspPI GGNCC 3 cut(s) 92, 232, 567
PstI CTGCAG 1 cut(s) 327
PsuI RGATCY 2 cut(s) 361, 586
PvuI CGATCG 1 cut(s) 259
RsaI GTAC 2 cut(s) 106, 387
RsaNI GTAC 2 cut(s) 105, 386
SaqAI TTAA 2 cut(s) 303, 486
SatI GCNGC 2 cut(s) 101, 172
Sau3AI GATC 5 cut(s) 256, 318, 361, 372, 586
Sau96I GGNCC 3 cut(s) 92, 232, 567
SbfI CCTGCAGG 1 cut(s) 327
ScrFI CCNGG 2 cut(s) 295, 571
SdaI CCTGCAGG 1 cut(s) 327
SetI ASST 9 cut(s) 32, 168, 279, 313, 347, 391, 409, 483, 564
SfaNI GCATC 3 cut(s) 183, 452, 583
SfcI CTRYAG 1 cut(s) 323
SfoI GGCGCC 1 cut(s) 340
SinI GGWCC 3 cut(s) 92, 232, 567
SmlI CTYRAG 2 cut(s) 111, 158
SmoI CTYRAG 2 cut(s) 111, 158
SnaBI TACGTA 1 cut(s) 389
Sse8387I CCTGCAGG 1 cut(s) 327
Sse9I AATT 1 cut(s) 80
SsiI CCGC 1 cut(s) 172
SspDI GGCGCC 1 cut(s) 338
SspI AATATT 2 cut(s) 400, 430
StyD4I CCNGG 2 cut(s) 293, 569
TaaI ACNGT 2 cut(s) 151, 236
TaiI ACGT 2 cut(s) 168, 391
TaqI TCGA 2 cut(s) 371, 577
TasI AATT 1 cut(s) 80
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 3 cut(s) 207, 214, 298
Tru1I TTAA 2 cut(s) 303, 486
Tru9I TTAA 2 cut(s) 303, 486
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 449, 507
VpaK11BI GGWCC 3 cut(s) 92, 232, 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.