Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7976220.1

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

85 .. 508

Gene Structure 424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7976220.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgcatcaagatagtactagtggctcagttaggagacccttttcactagctttcaaagacaatcaggaacaagtgagcttcttttctcagcaagcaaagcagtctccaagaacttcctcaggaacgatttctgcaacctctggtgattcttcttcaaccagcccatcactctcgagtaaaacgcgaatacgatggaatcaagatcttcacgagaagtttgttgagtgtgtcaatcgtcttgggggtgctgacagtaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

86

Amino Acids

9.43

Weight (kDa)

9.51

Isoelectric Point (pI)

82.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	55, 156
AhlI	ACTAGT	1 cut(s)	17
AluBI	AGCT	2 cut(s)	50, 78
AluI	AGCT	2 cut(s)	50, 78
Alw26I	GTCTC	2 cut(s)	28, 108
Ama87I	CYCGRG	1 cut(s)	172
Asp700I	GAANNNNTTC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	172
AxyI	CCTNAGG	1 cut(s)	118
BauI	CACGAG	1 cut(s)	209
BccI	CCATC	2 cut(s)	172, 186
BcoDI	GTCTC	2 cut(s)	28, 108
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	2 cut(s)	18, 47
BglII	AGATCT	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	28
Bse21I	CCTNAGG	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	39, 101, 132
Bsh1236I	CGCG	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	28, 108
Bso31I	GGTCTC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	202
BspCNI	CTCAG	3 cut(s)	38, 100, 131
BspFNI	CGCG	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	28
BssMI	GATC	1 cut(s)	202
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	25, 87, 118
BstFNI	CGCG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	2 cut(s)	28, 108
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstUI	CGCG	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	15
CviJI	RGCY	4 cut(s)	24, 50, 78, 162
CviKI_1	RGCY	4 cut(s)	24, 50, 78, 162
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	3 cut(s)	25, 87, 118
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	6
FspBI	CTAG	2 cut(s)	18, 47
HinfI	GANTC	2 cut(s)	146, 196
HphI	GGTGA	1 cut(s)	155
Hpy188III	TCNNGA	6 cut(s)	8, 65, 120, 172, 200, 209
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	4, 134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	3 cut(s)	25, 87, 118
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	4 cut(s)	50, 105, 126, 172
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	18, 47
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	141, 144, 197
MflI	RGATCY	1 cut(s)	202
MnlI	CCTC	2 cut(s)	127, 148
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	127
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	146, 196
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	16
SetI	ASST	3 cut(s)	52, 80, 140
SfaNI	GCATC	1 cut(s)	13
Sfr274I	CTCGAG	1 cut(s)	172
SlaI	CTCGAG	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SpeI	ACTAGT	1 cut(s)	17
SspMI	CTAG	2 cut(s)	18, 47
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	173
TatI	WGTACW	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	146, 196
XhoI	CTCGAG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	2 cut(s)	18, 47
ZrmI	AGTACT	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.