Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

15394084 .. 15395818

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0179900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGCGTCGTCGAAGCAGTTCAAGGAGGAGAGAGCTGAGGCAGAAGCGAGGAAAGCCGCGCTTGATCTGAAAGATGGGAACAGAGAGAGAGAGTACGAAACAGCTGGGGTGAAGATGGACAGGGACATGTACGGCCAGCCAAGAGAGCCATCCCATGTGCAACAAGAAGCGAAGCCTGGTGTGATTGGGTCTGTTTTTAGGGCTGTGACCGGCACATTGGAGCATGCAAAGGACGCTGTTGTGGGCAAAAGCCATGACACTTCTGATGCAGCAAGAGAGCGTTCGGAATACACCACACTTAAGGCGAAGGAAACGACTGATGCGGCTGGAGAGAAGCTGGAGGAGTATAAGGAGGCCGCGGCGCGGCCGGCGAAGGAGTCTGGGGAGAAGACGAAGGAGGTGAAGGACACTGCTGCGGAGAAGGCCAAAGAGACCAAGGATTCTGCCAAGGGGAAGGGGAGTGAGTATGCGGATTACACTTCGCAGAAGGCGAAAGAGGCCAAGGAAGCCGCGGCGGAGAAGGCTAAGCAGACGAAAGACTATGTTGCCGAGACCGCAAGTGAGGCTACGGAGAAGGCGAAAGAGACAAAGGATGCTGCGATGAGGAAGGCTGAGGAGTACACGGATTACACTGCTCAGAAGGCCAAGGAGACCAAGGATACCACAGTAGGGAAGGCTAAAGAGTACACTAATTATGGGGCCGAGAAGGCAGAGGAGGCCAAGGACATTACAGTGGGGAAGGCCGGTGAGTACACGAACTATGCTGCCGCGAAGGCAAAGGGGGCCAAGGAAACTACGGTGGGGAAGGCGGAGGAGTACAAGAATTACACCGCAGAAAAGGCAAAGGAGACTGCGGAGGCAACCAAAGAAAAGGCAAAAGAGACTGCGGAGGCGGCCAAAGACAAGACTAAAGAGACAGCGGAGTATACAGCTGAGAAAGCAAAAGAAGGGAAGGACACTACTGTGAGCAAGTTGGGTGGGCTCATGAATTACTTGACTGGTAAGAAAGAAGAAACCAAACAGAAGGCTGCAGAGACGGCTGAGACTGTCAAAGAGAACACTAAACAGGCGGCTGAGGCGGCGAAGGAGAAGACTGAAGAGACTGCCGAGGCAACCAAACAGAAGACCAAAGAGGCAGCTGAAAAAACCAAGGAGACGTTGGGTGAGACCGAGGACGAAGCTAGGAGAAAGATGGAGGAGCTGAGGCTAAGGGAGAAAGGTTATGAAGCGAGAGCAGGAGACATGGACCGTGATGAGGACCGCGGGATTGAGGCAGCTAAGGGCACTGCAGCAAAGAGCAACATTTTCAGCTCACTTGGGAGTGTGAGTGATGCCATCAAGAGCAAGCTGACTCATCCAACCGATGTGGTGGAGGAGTCACGTGCTGCACGTGAGAAGGGGAGTACGGGGAGGACCAAGACTCCTGCTATGGTAGAGGTACCTGTGGAGAAGGTGGAGATTGACATCAGGGACACGCGCCCGGGGGCTGTGGCCACGGCACTTAAGAAGTCTGACCAGATGTTTGGTCAAACTTTCAACGATCCTGGTAGTATGGGAGATGAGGGCAAGGTGGTTATGGAGCGGCGCGTGGTAGACGAAGCCGGAAATGTGCGTGTGGACCGCAGTGGCAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

545

Amino Acids

59.46

Weight (kDa)

5.94

Isoelectric Point (pI)

23.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_4	PF02987	157 - 189	4.1e-06	Late embryogenesis abundant protein
LEA_4	PF02987	189 - 229	4.7e-14	Late embryogenesis abundant protein
LEA_4	PF02987	230 - 273	7.3e-14	Late embryogenesis abundant protein
LEA_4	PF02987	252 - 295	2.3e-08	Late embryogenesis abundant protein
LEA_4	PF02987	287 - 326	5.1e-07	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1438
AccB1I	GGYRCC	1 cut(s)	1438
AccBSI	CCGCTC	1 cut(s)	1582
AccI	GTMKAC	2 cut(s)	926, 1593
AccII	CGCG	8 cut(s)	59, 359, 364, 512, 770, 1263, 1477, 1587
AclWI	GGATC	1 cut(s)	1535
AcoI	YGGCCR	4 cut(s)	133, 365, 894, 1491
AcuI	CTGAAG	1 cut(s)	1116
AcvI	CACGTG	2 cut(s)	1382, 1391
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	8 cut(s)	95, 131, 620, 686, 752, 818, 1405, 1440
AfiI	CCNNNNNNNGG	3 cut(s)	363, 669, 1255
AflII	CTTAAG	2 cut(s)	299, 1502
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	22, 1537
AjnI	CCWGG	2 cut(s)	175, 1543
AleI	CACNNNNGTG	1 cut(s)	962
AlwI	GGATC	1 cut(s)	1535
Ama87I	CYCGRG	1 cut(s)	1480
ApeKI	GCWGC	9 cut(s)	269, 413, 596, 764, 1028, 1136, 1274, 1289, 1385
ArsI	GACNNNNNNTTYG	2 cut(s)	1505, 1537
Asp700I	GAANNNNTTC	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	1438
AspLEI	GCGC	4 cut(s)	61, 364, 1479, 1587
AspS9I	GGNCC	6 cut(s)	699, 783, 1246, 1258, 1413, 1618
AsuC2I	CCSGG	2 cut(s)	1481, 1482
AsuHPI	GGTGA	4 cut(s)	121, 412, 758, 1175
AvaI	CYCGRG	1 cut(s)	1480
AvaII	GGWCC	4 cut(s)	1246, 1258, 1413, 1618
BaeGI	GKGCMC	1 cut(s)	1286
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BalI	TGGCCA	1 cut(s)	1493
BanI	GGYRCC	1 cut(s)	1438
BanII	GRGCYC	1 cut(s)	984
BbrPI	CACGTG	2 cut(s)	1382, 1391
BbsI	GAAGAC	3 cut(s)	395, 1097, 1130
BbvCI	CCTCAGC	4 cut(s)	36, 612, 1074, 1202
BbvI	GCAGC	9 cut(s)	281, 400, 583, 751, 1015, 1148, 1286, 1301, 1372
BccI	CCATC	5 cut(s)	68, 109, 157, 1186, 1343
BceAI	ACGGC	3 cut(s)	148, 1053, 1512
BciT130I	CCWGG	2 cut(s)	177, 1545
BciVI	GTATCC	1 cut(s)	652
BcnI	CCSGG	2 cut(s)	1481, 1482
BfaI	CTAG	1 cut(s)	1182
BfmI	CTRYAG	2 cut(s)	1029, 1287
BfrI	CTTAAG	2 cut(s)	299, 1502
BfuI	GTATCC	1 cut(s)	652
BglI	GCCNNNNNGGC	2 cut(s)	707, 773
BlpI	GCTNAGC	1 cut(s)	525
Bme1390I	CCNGG	4 cut(s)	177, 1481, 1482, 1545
Bme18I	GGWCC	4 cut(s)	1246, 1258, 1413, 1618
BmeT110I	CYCGRG	1 cut(s)	1480
BmgT120I	GGNCC	6 cut(s)	699, 783, 1246, 1258, 1413, 1618
BmiI	GGNNCC	3 cut(s)	700, 784, 1440
BmrFI	CCNGG	4 cut(s)	177, 1481, 1482, 1545
BmsI	GCATC	4 cut(s)	256, 310, 583, 1321
BpiI	GAAGAC	3 cut(s)	395, 1097, 1130
BpmI	CTGGAG	2 cut(s)	348, 359
Bpu10I	CCTNAGC	6 cut(s)	36, 612, 1074, 1202, 1208, 1278
Bpu1102I	GCTNAGC	1 cut(s)	525
BpuMI	CCSGG	2 cut(s)	1481, 1482
BsaAI	YACGTR	2 cut(s)	1382, 1391
BsaBI	GATNNNNATC	1 cut(s)	1463
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	4 cut(s)	425, 545, 644, 1160
BsaXI	ACNNNNNCTCC	4 cut(s)	1312, 1342, 1405, 1435
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 669, 1255
Bse118I	RCCGGY	3 cut(s)	209, 367, 743
Bse1I	ACTGG	1 cut(s)	1003
Bse8I	GATNNNNATC	1 cut(s)	1463
BseBI	CCWGG	2 cut(s)	177, 1545
BseGI	GGATG	3 cut(s)	149, 598, 1354
BseJI	GATNNNNATC	1 cut(s)	1463
BseLI	CCNNNNNNNGG	3 cut(s)	363, 669, 1255
BseMII	CTCAG	7 cut(s)	27, 603, 650, 924, 1032, 1065, 1193
BseNI	ACTGG	1 cut(s)	1003
BseRI	GAGGAG	7 cut(s)	41, 356, 629, 728, 827, 1211, 1388
BseSI	GKGCMC	1 cut(s)	1286
BseX3I	CGGCCG	1 cut(s)	365
BseXI	GCAGC	9 cut(s)	281, 400, 583, 751, 1015, 1148, 1286, 1301, 1372
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	1371
Bsh1236I	CGCG	8 cut(s)	59, 359, 364, 512, 770, 1263, 1477, 1587
Bsh1285I	CGRYCG	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	1438
BsiEI	CGRYCG	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	1480
BsiSI	CCGG	5 cut(s)	210, 368, 744, 1481, 1602
BslFI	GGGAC	2 cut(s)	137, 1484
BslI	CCNNNNNNNGG	3 cut(s)	363, 669, 1255
BsmBI	CGTCTC	2 cut(s)	1028, 1148
BsmFI	GGGAC	2 cut(s)	137, 1484
Bso31I	GGTCTC	4 cut(s)	425, 545, 644, 1160
BsoBI	CYCGRG	1 cut(s)	1480
Bsp1286I	GDGCHC	2 cut(s)	984, 1286
Bsp143I	GATC	2 cut(s)	64, 1540
Bsp1720I	GCTNAGC	1 cut(s)	525
BspCNI	CTCAG	7 cut(s)	28, 604, 649, 925, 1033, 1066, 1194
BspFNI	CGCG	8 cut(s)	59, 359, 364, 512, 770, 1263, 1477, 1587
BspHI	TCATGA	1 cut(s)	984
BspLI	GGNNCC	3 cut(s)	700, 784, 1440
BspMAI	CTGCAG	2 cut(s)	1033, 1291
BspPI	GGATC	1 cut(s)	1535
BspT107I	GGYRCC	1 cut(s)	1438
BspTI	CTTAAG	2 cut(s)	299, 1502
BspTNI	GGTCTC	4 cut(s)	425, 545, 644, 1160
BsrBI	CCGCTC	1 cut(s)	1582
BsrFI	RCCGGY	3 cut(s)	209, 367, 743
BsrI	ACTGG	1 cut(s)	1003
BssAI	RCCGGY	3 cut(s)	209, 367, 743
BssMI	GATC	2 cut(s)	64, 1540
BssNAI	GTATAC	1 cut(s)	927
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	8 cut(s)	435, 447, 501, 645, 654, 720, 786, 1149
Bst1107I	GTATAC	1 cut(s)	927
Bst2UI	CCWGG	2 cut(s)	177, 1545
Bst4CI	ACNGT	6 cut(s)	667, 733, 799, 964, 1048, 1250
Bst6I	CTCTTC	1 cut(s)	1092
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	2 cut(s)	299, 1502
BstBAI	YACGTR	2 cut(s)	1382, 1391
BstC8I	GCNNGC	4 cut(s)	137, 225, 369, 1346
BstDSI	CCRYGG	4 cut(s)	357, 510, 1261, 1494
BstF5I	GGATG	3 cut(s)	149, 598, 1354
BstFNI	CGCG	8 cut(s)	59, 359, 364, 512, 770, 1263, 1477, 1587
BstHHI	GCGC	4 cut(s)	61, 364, 1479, 1587
BstKTI	GATC	2 cut(s)	67, 1543
BstMBI	GATC	2 cut(s)	64, 1540
BstMCI	CGRYCG	1 cut(s)	368
BstNI	CCWGG	2 cut(s)	177, 1545
BstNSI	RCATGY	2 cut(s)	130, 227
BstSCI	CCNGG	4 cut(s)	175, 1479, 1480, 1543
BstSFI	CTRYAG	2 cut(s)	1029, 1287
BstSLI	GKGCMC	1 cut(s)	1286
BstUI	CGCG	8 cut(s)	59, 359, 364, 512, 770, 1263, 1477, 1587
BstV1I	GCAGC	9 cut(s)	281, 400, 583, 751, 1015, 1148, 1286, 1301, 1372
BstV2I	GAAGAC	3 cut(s)	395, 1097, 1130
BstXI	CCANNNNNNTGG	1 cut(s)	1523
BstZ17I	GTATAC	1 cut(s)	927
BstZI	CGGCCG	1 cut(s)	365
BsuI	GTATCC	1 cut(s)	652
BtgI	CCRYGG	4 cut(s)	357, 510, 1261, 1494
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	3 cut(s)	149, 598, 1354
BtsI	GCAGTG	4 cut(s)	408, 630, 1284, 1630
BtsIMutI	CAGTG	5 cut(s)	408, 630, 738, 1284, 1630
Cac8I	GCNNGC	4 cut(s)	137, 225, 369, 1346
CciI	TCATGA	1 cut(s)	984
CfoI	GCGC	4 cut(s)	61, 364, 1479, 1587
Cfr10I	RCCGGY	3 cut(s)	209, 367, 743
Cfr13I	GGNCC	6 cut(s)	699, 783, 1246, 1258, 1413, 1618
Cfr42I	CCGCGG	3 cut(s)	360, 513, 1264
Cfr9I	CCCGGG	1 cut(s)	1480
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	8 cut(s)	94, 130, 619, 685, 751, 817, 1404, 1439
CspCI	CAANNNNNGTGG	4 cut(s)	958, 993, 1347, 1382
CviAII	CATG	6 cut(s)	127, 155, 224, 254, 985, 1243
CviQI	GTAC	8 cut(s)	94, 130, 619, 685, 751, 817, 1404, 1439
DpnI	GATC	2 cut(s)	66, 1542
DpnII	GATC	2 cut(s)	64, 1540
EaeI	YGGCCR	4 cut(s)	133, 365, 894, 1491
EagI	CGGCCG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	1092
EarI	CTCTTC	1 cut(s)	1092
EciI	GGCGGA	2 cut(s)	530, 824
EclXI	CGGCCG	1 cut(s)	365
Eco130I	CCWWGG	8 cut(s)	435, 447, 501, 645, 654, 720, 786, 1149
Eco24I	GRGCYC	1 cut(s)	984
Eco31I	GGTCTC	4 cut(s)	425, 545, 644, 1160
Eco47I	GGWCC	4 cut(s)	1246, 1258, 1413, 1618
Eco52I	CGGCCG	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	1116
Eco72I	CACGTG	2 cut(s)	1382, 1391
Eco88I	CYCGRG	1 cut(s)	1480
EcoRII	CCWGG	2 cut(s)	175, 1543
EcoT14I	CCWWGG	8 cut(s)	435, 447, 501, 645, 654, 720, 786, 1149
EcoT38I	GRGCYC	1 cut(s)	984
ErhI	CCWWGG	8 cut(s)	435, 447, 501, 645, 654, 720, 786, 1149
Esp3I	CGTCTC	2 cut(s)	1028, 1148
FaeI	CATG	6 cut(s)	130, 158, 227, 257, 988, 1246
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	2 cut(s)	137, 1484
FatI	CATG	6 cut(s)	126, 154, 223, 253, 984, 1242
FauI	CCCGC	1 cut(s)	1256
FblI	GTMKAC	2 cut(s)	926, 1593
FokI	GGATG	3 cut(s)	136, 605, 1341
FriOI	GRGCYC	1 cut(s)	984
FspBI	CTAG	1 cut(s)	1182
GlaI	GCGC	4 cut(s)	60, 363, 1478, 1586
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	2 cut(s)	348, 359
HapII	CCGG	5 cut(s)	210, 368, 744, 1481, 1602
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	4 cut(s)	61, 364, 1479, 1587
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	130, 158, 227, 257, 988, 1246
Hin6I	GCGC	4 cut(s)	59, 362, 1477, 1585
HinP1I	GCGC	4 cut(s)	59, 362, 1477, 1585
HinfI	GANTC	5 cut(s)	377, 440, 1351, 1376, 1420
HpaII	CCGG	5 cut(s)	210, 368, 744, 1481, 1602
HphI	GGTGA	4 cut(s)	121, 412, 758, 1175
Hpy166II	GTNNAC	6 cut(s)	621, 687, 753, 927, 1594, 1618
Hpy188I	TCNGA	5 cut(s)	69, 265, 286, 639, 1513
Hpy188III	TCNNGA	2 cut(s)	985, 1339
Hpy8I	GTNNAC	6 cut(s)	621, 687, 753, 927, 1594, 1618
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyCH4III	ACNGT	6 cut(s)	667, 733, 799, 964, 1048, 1250
HpyCH4IV	ACGT	3 cut(s)	1157, 1381, 1390
HpyCH4V	TGCA	6 cut(s)	160, 227, 269, 1031, 1289, 1388
HpySE526I	ACGT	3 cut(s)	1157, 1381, 1390
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	130, 158, 227, 257, 988, 1246
HspAI	GCGC	4 cut(s)	59, 362, 1477, 1585
KpnI	GGTACC	1 cut(s)	1442
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
KspI	CCGCGG	3 cut(s)	360, 513, 1264
Kzo9I	GATC	2 cut(s)	64, 1540
LmnI	GCTCC	3 cut(s)	220, 1198, 1579
Lsp1109I	GCAGC	9 cut(s)	281, 400, 583, 751, 1015, 1148, 1286, 1301, 1372
LweI	GCATC	4 cut(s)	256, 310, 583, 1321
MaeI	CTAG	1 cut(s)	1182
MaeII	ACGT	3 cut(s)	1157, 1381, 1390
MaeIII	GTNAC	2 cut(s)	205, 1377
MalI	GATC	2 cut(s)	66, 1542
MbiI	CCGCTC	1 cut(s)	1582
MboI	GATC	2 cut(s)	64, 1540
MboII	GAAGA	6 cut(s)	124, 400, 1022, 1102, 1109, 1135
MhlI	GDGCHC	2 cut(s)	984, 1286
MlsI	TGGCCA	1 cut(s)	1493
MluCI	AATT	3 cut(s)	691, 823, 988
MluNI	TGGCCA	1 cut(s)	1493
MlyI	GAGTC	4 cut(s)	386, 1345, 1385, 1414
MmeI	TCCRAC	1 cut(s)	1382
Mox20I	TGGCCA	1 cut(s)	1493
MroNI	GCCGGC	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	1493
MseI	TTAA	2 cut(s)	300, 1503
MslI	CAYNNNNRTG	2 cut(s)	731, 962
Msp20I	TGGCCA	1 cut(s)	1493
MspA1I	CMGCKG	7 cut(s)	104, 359, 512, 920, 932, 1139, 1263
MspCI	CTTAAG	2 cut(s)	299, 1502
MspI	CCGG	5 cut(s)	210, 368, 744, 1481, 1602
MspR9I	CCNGG	4 cut(s)	177, 1481, 1482, 1545
MvaI	CCWGG	2 cut(s)	177, 1545
MvnI	CGCG	8 cut(s)	59, 359, 364, 512, 770, 1263, 1477, 1587
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	2 cut(s)	1481, 1482
NdeII	GATC	2 cut(s)	64, 1540
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	6 cut(s)	130, 158, 227, 257, 988, 1246
NlaIV	GGNNCC	3 cut(s)	700, 784, 1440
NmeAIII	GCCGAG	3 cut(s)	574, 727, 1132
NmuCI	GTSAC	2 cut(s)	205, 1377
NspI	RCATGY	2 cut(s)	130, 227
OliI	CACNNNNGTG	1 cut(s)	962
PaeI	GCATGC	1 cut(s)	227
PagI	TCATGA	1 cut(s)	984
PciI	ACATGT	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	3 cut(s)	488, 575, 1387
PdiI	GCCGGC	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	440
PleI	GAGTC	4 cut(s)	385, 1345, 1384, 1414
PmaCI	CACGTG	2 cut(s)	1382, 1391
PmlI	CACGTG	2 cut(s)	1382, 1391
PpsI	GAGTC	4 cut(s)	385, 1345, 1384, 1414
Ppu21I	YACGTR	2 cut(s)	1382, 1391
PscI	ACATGT	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	175, 1543
PspCI	CACGTG	2 cut(s)	1382, 1391
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	2 cut(s)	175, 1543
PspN4I	GGNNCC	3 cut(s)	700, 784, 1440
PspPI	GGNCC	6 cut(s)	699, 783, 1246, 1258, 1413, 1618
PstI	CTGCAG	2 cut(s)	1033, 1291
PvuII	CAGCTG	3 cut(s)	104, 932, 1139
RsaI	GTAC	8 cut(s)	95, 131, 620, 686, 752, 818, 1405, 1440
RsaNI	GTAC	8 cut(s)	94, 130, 619, 685, 751, 817, 1404, 1439
RseI	CAYNNNNRTG	2 cut(s)	731, 962
SacII	CCGCGG	3 cut(s)	360, 513, 1264
SaqAI	TTAA	2 cut(s)	300, 1503
Sau3AI	GATC	2 cut(s)	64, 1540
Sau96I	GGNCC	6 cut(s)	699, 783, 1246, 1258, 1413, 1618
SchI	GAGTC	4 cut(s)	386, 1345, 1385, 1414
ScrFI	CCNGG	4 cut(s)	177, 1481, 1482, 1545
SduI	GDGCHC	2 cut(s)	984, 1286
SfaNI	GCATC	4 cut(s)	256, 310, 583, 1321
SfcI	CTRYAG	2 cut(s)	1029, 1287
Sfr303I	CCGCGG	3 cut(s)	360, 513, 1264
SgrBI	CCGCGG	3 cut(s)	360, 513, 1264
SinI	GGWCC	4 cut(s)	1246, 1258, 1413, 1618
SmaI	CCCGGG	1 cut(s)	1482
SmiMI	CAYNNNNRTG	2 cut(s)	731, 962
SmlI	CTYRAG	2 cut(s)	299, 1502
SmoI	CTYRAG	2 cut(s)	299, 1502
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	3 cut(s)	691, 823, 988
SspMI	CTAG	1 cut(s)	1182
StyD4I	CCNGG	4 cut(s)	175, 1479, 1480, 1543
StyI	CCWWGG	8 cut(s)	435, 447, 501, 645, 654, 720, 786, 1149
TaaI	ACNGT	6 cut(s)	667, 733, 799, 964, 1048, 1250
TaiI	ACGT	3 cut(s)	1160, 1384, 1393
TaqI	TCGA	1 cut(s)	11
TaqII	GACCGA	1 cut(s)	1184
TasI	AATT	3 cut(s)	691, 823, 988
TatI	WGTACW	4 cut(s)	618, 684, 750, 816
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	2 cut(s)	300, 1503
Tru9I	TTAA	2 cut(s)	300, 1503
TscAI	CASTG	5 cut(s)	415, 637, 738, 1291, 1630
TseFI	GTSAC	2 cut(s)	205, 1377
TseI	GCWGC	9 cut(s)	269, 413, 596, 764, 1028, 1136, 1274, 1289, 1385
Tsp45I	GTSAC	2 cut(s)	205, 1377
TspDTI	ATGAA	2 cut(s)	1001, 1239
TspGWI	ACGGA	2 cut(s)	584, 638
TspMI	CCCGGG	1 cut(s)	1480
TspRI	CASTG	5 cut(s)	415, 637, 738, 1291, 1630
Vha464I	CTTAAG	2 cut(s)	299, 1502
VpaK11BI	GGWCC	4 cut(s)	1246, 1258, 1413, 1618
XceI	RCATGY	2 cut(s)	130, 227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1156
XmaI	CCCGGG	1 cut(s)	1480
XmiI	GTMKAC	2 cut(s)	926, 1593
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	1 cut(s)	1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.