Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Reverse (-)

15430078 .. 15434819

Gene Structure 4742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0180100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGGGTGACAGGCCGGAGGACGATGATCGGAGTCAGAGCAGCGACTTCACCTCCGAGGACGAAGGCACCGAGGACTACCGGCGCGGAGGGTACCACGCTGTTCGAATCGGCGACACCTTCAAGCTCGGACGCTATGTCGTTCAGACCAAGCTCGGTTGGGGCCACTTCTCCACCGTCTGGCTCGCCTGGGATACCCAGACCTCTCGGTATGTTGCTCTGAAAGTGCAAAAGAGTGCCGACCACTACACTGAGGCGGCCATGGACGAGATCACCATATTGAAACAGATTGCAGAGGGAGACCCGGATGATAAAAAATGCGTGGTTAAGCTTCTGGACCACTTTAAGCACTCGGGTCCAAATGGGCAACATGTTTGCATGGTTTTTGAGTACTTGGGGGATAATCTGTTAACACTTATTAAGTACAGTGACTACCGCGGAGTGCCGTTGCATATGGTTAAGCAGATTTGTTATCATGTTTTGGTCGGATTGGATTACTTGCATAGACAGCTCTCTATTATACACACAGATTTGAAGCCGGAGAATATCTTGTTGTTGTCAATGATAGACCCTTCCAAGGATCCAACAAAGTCAAGTGCACCTCTCATTCTTCCAAGTAACAAGGACAAGGATGCATTCGACACAGGAGTTTCACAGCCATTGAATGGGGATACGTCTAGGAACCAGAAGAAAAAGATTAGAAGAAAGGCTAAGCGTGCGGCTCAAGAATGTGCAGACAGAGAGGAAACTGATGTTGATGTAGAAACATCAGGCGAGGCCGAGTCATCTCCTAATACAAAATTGAATGTGCATTCCGCCGAAGGCCAGAGTACTAGTTCTGTTAATACGAATAGATCATCAGATGCTGATGGACCAAAGGGTGCTGGCACAGGAAATCAGGGTGGTAAGAGAAGAGGGAATCGTAGCATAAGGCAAAAGTTGTTGACATCAATGGACTTGAAGTGCAAATTAGTTGACTTTGGGAATGCATGTTGGACGTACAAACAGTTCACAAATGATATTCAAACAAGACAGTATAGGTGTCCAGAGGTGATCTTGGGATCAAAATATTCTACTTCAGCGGATCTTTGGTCTTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGTGATGTGCTCTTTGATCCTCACAGTGGTGACAACTTTGACAGGGATGAGGACCACCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCGCGGAAGATTGCTTTAGGTGGTCGATATTCAAGAGATTACTTTAATAGATATGGGGATTTGAGGCACATTCGTCGCCTGCGTTTTTGGCCCTTGAATAAGGTTCTACTGGAGAAGTATGAGTTCAGCGAGCAAGATGCAAGTGAATTGACAGACTTCCTGGTTCCCATTCTTGACTTTGTTCCGGAAAAGCGGCCTACTGCTGCACAGTGCCTTCTTCATCCATGGATCAATGCAGGTCCTCGACTATTGGAACCATCTATAGCTTCTGATAAAGAACAATGTAGGGACAGTGGCATTGCTGAAGACAAGAAGGAAAAAGATGATAGGGAGGCTATGGAAGCTGGAATGGGAAATATTGCCATCAACTCAGATTCTAAACCGGTCAAAGATCTTCCGACTAGTAGTAAACCCGCTAAGGCAGCCACAACTACAAGGCAGAACTCTAGCAAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

556

Amino Acids

62.49

Weight (kDa)

6.24

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	45 - 185	3.7e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	47 - 245	1.4e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	313 - 481	1.7e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1439
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	2 cut(s)	65, 90
AccB7I	CCANNNNNTGG	2 cut(s)	177, 662
AccII	CGCG	3 cut(s)	84, 435, 1216
AccIII	TCCGGA	1 cut(s)	1396
AclWI	GGATC	6 cut(s)	572, 585, 1066, 1089, 1133, 1448
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	1059, 1536
AfaI	GTAC	5 cut(s)	92, 389, 422, 829, 998
AfiI	CCNNNNNNNGG	4 cut(s)	177, 574, 662, 1148
AflIII	ACRYGT	1 cut(s)	367
AgeI	ACCGGT	1 cut(s)	1594
AgsI	TTSAA	9 cut(s)	121, 280, 532, 661, 802, 958, 1022, 1245, 1309
AhdI	GACNNNNNGTC	1 cut(s)	134
AhlI	ACTAGT	2 cut(s)	830, 1613
AjnI	CCWGG	3 cut(s)	185, 1179, 1371
AleI	CACNNNNGTG	1 cut(s)	1149
AluBI	AGCT	8 cut(s)	124, 151, 328, 508, 1114, 1198, 1478, 1556
AluI	AGCT	8 cut(s)	124, 151, 328, 508, 1114, 1198, 1478, 1556
Alw21I	GWGCWC	2 cut(s)	598, 1134
Alw26I	GTCTC	1 cut(s)	291
Alw44I	GTGCAC	1 cut(s)	594
AlwI	GGATC	6 cut(s)	572, 585, 1066, 1089, 1133, 1448
AlwNI	CAGNNNCTG	1 cut(s)	863
Ama87I	CYCGRG	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	1396
AoxI	GGCC	7 cut(s)	11, 160, 255, 774, 820, 1301, 1406
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	3 cut(s)	39, 1415, 1634
AsiGI	ACCGGT	1 cut(s)	1594
Asp718I	GGTACC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	7 cut(s)	160, 334, 353, 869, 1174, 1302, 1451
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	6 cut(s)	17, 40, 262, 1060, 1136, 1163
AsuII	TTCGAA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	349
AvaII	GGWCC	5 cut(s)	334, 353, 869, 1174, 1451
BaeGI	GKGCMC	1 cut(s)	598
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	2 cut(s)	65, 90
BbsI	GAAGAC	1 cut(s)	1524
Bbv12I	GWGCWC	2 cut(s)	598, 1134
BbvI	GCAGC	3 cut(s)	51, 1402, 1646
BccI	CCATC	4 cut(s)	860, 1186, 1477, 1583
BceAI	ACGGC	1 cut(s)	427
BcgI	CGANNNNNNTGC	4 cut(s)	1268, 1302, 1331, 1365
BciT130I	CCWGG	3 cut(s)	187, 1181, 1373
BciVI	GTATCC	2 cut(s)	184, 661
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	291
BcuI	ACTAGT	2 cut(s)	830, 1613
BfaI	CTAG	4 cut(s)	675, 831, 1614, 1659
BfmI	CTRYAG	1 cut(s)	1473
BfuAI	ACCTGC	1 cut(s)	1439
BfuI	GTATCC	2 cut(s)	184, 661
BglII	AGATCT	1 cut(s)	1603
BisI	GCNGC	7 cut(s)	40, 255, 717, 1214, 1406, 1416, 1635
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	7 cut(s)	41, 256, 718, 1215, 1407, 1417, 1636
BmcAI	AGTACT	2 cut(s)	389, 829
Bme1390I	CCNGG	4 cut(s)	187, 302, 1181, 1373
Bme18I	GGWCC	5 cut(s)	334, 353, 869, 1174, 1451
BmeRI	GACNNNNNGTC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	349
BmgT120I	GGNCC	7 cut(s)	160, 334, 353, 869, 1174, 1302, 1451
BmiI	GGNNCC	8 cut(s)	67, 92, 161, 354, 579, 680, 1377, 1467
BmrFI	CCNGG	4 cut(s)	187, 302, 1181, 1373
BmsI	GCATC	4 cut(s)	619, 850, 1200, 1339
BpiI	GAAGAC	1 cut(s)	1524
BpmI	CTGGAG	1 cut(s)	1343
Bpu10I	CCTNAGC	1 cut(s)	1629
Bpu1102I	GCTNAGC	1 cut(s)	708
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	8 cut(s)	54, 69, 186, 258, 433, 573, 1214, 1436
BsaWI	WCCGGW	2 cut(s)	1396, 1594
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 574, 662, 1148
Bse118I	RCCGGY	2 cut(s)	78, 1594
Bse1I	ACTGG	2 cut(s)	1126, 1326
Bse3DI	GCAATG	1 cut(s)	1509
BseAI	TCCGGA	1 cut(s)	1396
BseBI	CCWGG	3 cut(s)	187, 1181, 1373
BseDI	CCNNGG	8 cut(s)	54, 69, 186, 258, 433, 573, 1214, 1436
BseGI	GGATG	4 cut(s)	310, 634, 1174, 1432
BseLI	CCNNNNNNNGG	4 cut(s)	177, 574, 662, 1148
BseMI	GCAATG	1 cut(s)	1509
BseMII	CTCAG	2 cut(s)	240, 1596
BseNI	ACTGG	2 cut(s)	1126, 1326
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	3 cut(s)	51, 1402, 1646
BsgI	GTGCAG	2 cut(s)	750, 1401
Bsh1236I	CGCG	3 cut(s)	84, 435, 1216
BshFI	GGCC	7 cut(s)	13, 162, 257, 776, 822, 1303, 1408
BshNI	GGYRCC	2 cut(s)	65, 90
BshTI	ACCGGT	1 cut(s)	1594
BsiHKAI	GWGCWC	2 cut(s)	598, 1134
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	6 cut(s)	14, 79, 302, 536, 1397, 1595
BslFI	GGGAC	1 cut(s)	1514
BslI	CCNNNNNNNGG	4 cut(s)	177, 574, 662, 1148
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	1514
BsmI	GAATGC	3 cut(s)	632, 808, 988
BsnI	GGCC	7 cut(s)	13, 162, 257, 776, 822, 1303, 1408
Bso31I	GGTCTC	1 cut(s)	291
BsoBI	CYCGRG	1 cut(s)	349
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	598, 1134
Bsp13I	TCCGGA	1 cut(s)	1396
Bsp1720I	GCTNAGC	1 cut(s)	708
Bsp19I	CCATGG	2 cut(s)	258, 1436
BspANI	GGCC	7 cut(s)	13, 162, 257, 776, 822, 1303, 1408
BspCNI	CTCAG	2 cut(s)	241, 1595
BspEI	TCCGGA	1 cut(s)	1396
BspFNI	CGCG	3 cut(s)	84, 435, 1216
BspLI	GGNNCC	8 cut(s)	67, 92, 161, 354, 579, 680, 1377, 1467
BspMI	ACCTGC	1 cut(s)	1439
BspPI	GGATC	6 cut(s)	572, 585, 1066, 1089, 1133, 1448
BspT104I	TTCGAA	1 cut(s)	103
BspT107I	GGYRCC	2 cut(s)	65, 90
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	1509
BsrFI	RCCGGY	2 cut(s)	78, 1594
BsrI	ACTGG	2 cut(s)	1126, 1326
BssAI	RCCGGY	2 cut(s)	78, 1594
BssECI	CCNNGG	8 cut(s)	54, 69, 186, 258, 433, 573, 1214, 1436
BssT1I	CCWWGG	3 cut(s)	258, 573, 1436
Bst2UI	CCWGG	3 cut(s)	187, 1181, 1373
Bst4CI	ACNGT	7 cut(s)	175, 425, 1005, 1032, 1148, 1422, 1505
Bst6I	CTCTTC	1 cut(s)	904
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	7 cut(s)	183, 714, 883, 1099, 1116, 1292, 1343
BstDEI	CTNAG	4 cut(s)	249, 708, 1582, 1629
BstDSI	CCRYGG	4 cut(s)	258, 433, 1214, 1436
BstF5I	GGATG	4 cut(s)	310, 634, 1174, 1432
BstFNI	CGCG	3 cut(s)	84, 435, 1216
BstHHI	GCGC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	5 cut(s)	505, 713, 1300, 1553, 1634
BstNI	CCWGG	3 cut(s)	187, 1181, 1373
BstNSI	RCATGY	2 cut(s)	371, 990
BstSCI	CCNGG	4 cut(s)	185, 300, 1179, 1371
BstSFI	CTRYAG	1 cut(s)	1473
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	3 cut(s)	84, 435, 1216
BstV1I	GCAGC	3 cut(s)	51, 1402, 1646
BstV2I	GAAGAC	1 cut(s)	1524
BstX2I	RGATCY	3 cut(s)	577, 1081, 1603
BstYI	RGATCY	3 cut(s)	577, 1081, 1603
BsuI	GTATCC	2 cut(s)	184, 661
BsuRI	GGCC	7 cut(s)	13, 162, 257, 776, 822, 1303, 1408
BtgI	CCRYGG	4 cut(s)	258, 433, 1214, 1436
BtsCI	GGATG	4 cut(s)	310, 634, 1174, 1432
BtsIMutI	CAGTG	5 cut(s)	246, 430, 1153, 1427, 1510
BveI	ACCTGC	1 cut(s)	1439
Cac8I	GCNNGC	7 cut(s)	183, 714, 883, 1099, 1116, 1292, 1343
CaiI	CAGNNNCTG	1 cut(s)	863
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	2 cut(s)	78, 1594
Cfr13I	GGNCC	7 cut(s)	160, 334, 353, 869, 1174, 1302, 1451
Cfr42I	CCGCGG	2 cut(s)	436, 1217
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	5 cut(s)	91, 388, 421, 828, 997
CspAI	ACCGGT	1 cut(s)	1594
CviAII	CATG	6 cut(s)	259, 368, 376, 473, 987, 1437
CviQI	GTAC	5 cut(s)	91, 388, 421, 828, 997
DdeI	CTNAG	4 cut(s)	249, 708, 1582, 1629
DriI	GACNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	904
Eam1105I	GACNNNNNGTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	904
EciI	GGCGGA	1 cut(s)	802
Eco130I	CCWWGG	3 cut(s)	258, 573, 1436
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	5 cut(s)	334, 353, 869, 1174, 1451
Eco57I	CTGAAG	2 cut(s)	1059, 1536
Eco88I	CYCGRG	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	1451
EcoRII	CCWGG	3 cut(s)	185, 1179, 1371
EcoT14I	CCWWGG	3 cut(s)	258, 573, 1436
EcoT22I	ATGCAT	2 cut(s)	634, 988
ErhI	CCWWGG	3 cut(s)	258, 573, 1436
FaeI	CATG	6 cut(s)	262, 371, 379, 476, 990, 1440
FaqI	GGGAC	1 cut(s)	1514
FatI	CATG	6 cut(s)	258, 367, 375, 472, 986, 1436
FauI	CCCGC	1 cut(s)	1633
FauNDI	CATATG	1 cut(s)	450
Fnu4HI	GCNGC	7 cut(s)	40, 255, 717, 1214, 1406, 1416, 1635
FokI	GGATG	4 cut(s)	317, 641, 1181, 1419
Fsp4HI	GCNGC	7 cut(s)	40, 255, 717, 1214, 1406, 1416, 1635
FspBI	CTAG	4 cut(s)	675, 831, 1614, 1659
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	7 cut(s)	40, 255, 717, 1214, 1406, 1416, 1635
GsuI	CTGGAG	1 cut(s)	1343
HaeIII	GGCC	7 cut(s)	13, 162, 257, 776, 822, 1303, 1408
HapII	CCGG	6 cut(s)	14, 79, 302, 536, 1397, 1595
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	6 cut(s)	262, 371, 379, 476, 990, 1440
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	3 cut(s)	408, 942, 973
HindII	GTYRAC	3 cut(s)	408, 942, 973
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	5 cut(s)	31, 105, 779, 916, 1586
HpaI	GTTAAC	1 cut(s)	408
HpaII	CCGG	6 cut(s)	14, 79, 302, 536, 1397, 1595
HphI	GGTGA	6 cut(s)	17, 40, 262, 1060, 1136, 1163
Hpy166II	GTNNAC	6 cut(s)	408, 596, 942, 973, 1008, 1622
Hpy188III	TCNNGA	6 cut(s)	332, 722, 1043, 1245, 1385, 1397
Hpy8I	GTNNAC	6 cut(s)	408, 596, 942, 973, 1008, 1622
Hpy99I	CGWCG	1 cut(s)	1290
HpyAV	CCTTC	6 cut(s)	56, 127, 579, 812, 1436, 1519
HpyCH4III	ACNGT	7 cut(s)	175, 425, 1005, 1032, 1148, 1422, 1505
HpyCH4IV	ACGT	2 cut(s)	671, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	505, 713, 1300, 1553, 1634
HpyF3I	CTNAG	4 cut(s)	249, 708, 1582, 1629
HpySE526I	ACGT	2 cut(s)	671, 995
Hsp92II	CATG	6 cut(s)	262, 371, 379, 476, 990, 1440
HspAI	GCGC	1 cut(s)	82
Kpn2I	TCCGGA	1 cut(s)	1396
KpnI	GGTACC	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	408
KspI	CCGCGG	2 cut(s)	436, 1217
LmnI	GCTCC	1 cut(s)	1195
Lsp1109I	GCAGC	3 cut(s)	51, 1402, 1646
LweI	GCATC	4 cut(s)	619, 850, 1200, 1339
MaeI	CTAG	4 cut(s)	675, 831, 1614, 1659
MaeII	ACGT	2 cut(s)	671, 995
MaeIII	GTNAC	4 cut(s)	5, 425, 614, 1151
MboII	GAAGA	8 cut(s)	599, 697, 711, 921, 1231, 1421, 1529, 1598
MflI	RGATCY	3 cut(s)	577, 1081, 1603
MhlI	GDGCHC	2 cut(s)	598, 1134
MluCI	AATT	3 cut(s)	797, 965, 1358
MlyI	GAGTC	2 cut(s)	40, 788
MmeI	TCCRAC	4 cut(s)	463, 605, 971, 1634
Mph1103I	ATGCAT	2 cut(s)	634, 988
MroI	TCCGGA	1 cut(s)	1396
MseI	TTAA	7 cut(s)	324, 342, 407, 417, 456, 840, 1257
MslI	CAYNNNNRTG	1 cut(s)	1149
MspA1I	CMGCKG	3 cut(s)	435, 1079, 1216
MspI	CCGG	6 cut(s)	14, 79, 302, 536, 1397, 1595
MspR9I	CCNGG	4 cut(s)	187, 302, 1181, 1373
Mva1269I	GAATGC	3 cut(s)	632, 808, 988
MvaI	CCWGG	3 cut(s)	187, 1181, 1373
MvnI	CGCG	3 cut(s)	84, 435, 1216
MwoI	GCNNNNNNNGC	5 cut(s)	505, 713, 1300, 1553, 1634
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	2 cut(s)	258, 1436
NdeI	CATATG	1 cut(s)	450
NlaIII	CATG	6 cut(s)	262, 371, 379, 476, 990, 1440
NlaIV	GGNNCC	8 cut(s)	67, 92, 161, 354, 579, 680, 1377, 1467
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	3 cut(s)	5, 425, 1151
NsiI	ATGCAT	2 cut(s)	634, 988
NspI	RCATGY	2 cut(s)	371, 990
NspV	TTCGAA	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	1149
PciI	ACATGT	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 1291
PctI	GAATGC	3 cut(s)	632, 808, 988
PfeI	GAWTC	3 cut(s)	105, 916, 1586
PflMI	CCANNNNNTGG	2 cut(s)	177, 662
PinAI	ACCGGT	1 cut(s)	1594
PkrI	GCNGC	7 cut(s)	41, 256, 718, 1215, 1407, 1417, 1636
PleI	GAGTC	2 cut(s)	39, 787
PpsI	GAGTC	2 cut(s)	39, 787
PpuMI	RGGWCCY	1 cut(s)	1451
PscI	ACATGT	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	1451
Psp6I	CCWGG	3 cut(s)	185, 1179, 1371
PspGI	CCWGG	3 cut(s)	185, 1179, 1371
PspN4I	GGNNCC	8 cut(s)	67, 92, 161, 354, 579, 680, 1377, 1467
PspPI	GGNCC	7 cut(s)	160, 334, 353, 869, 1174, 1302, 1451
PspPPI	RGGWCCY	1 cut(s)	1451
PsrI	GAACNNNNNNTAC	2 cut(s)	989, 1021
PstNI	CAGNNNCTG	1 cut(s)	863
PsuI	RGATCY	3 cut(s)	577, 1081, 1603
RsaI	GTAC	5 cut(s)	92, 389, 422, 829, 998
RsaNI	GTAC	5 cut(s)	91, 388, 421, 828, 997
RseI	CAYNNNNRTG	1 cut(s)	1149
SacII	CCGCGG	2 cut(s)	436, 1217
SaqAI	TTAA	7 cut(s)	324, 342, 407, 417, 456, 840, 1257
SatI	GCNGC	7 cut(s)	40, 255, 717, 1214, 1406, 1416, 1635
Sau96I	GGNCC	7 cut(s)	160, 334, 353, 869, 1174, 1302, 1451
ScaI	AGTACT	2 cut(s)	389, 829
SchI	GAGTC	2 cut(s)	40, 788
ScrFI	CCNGG	4 cut(s)	187, 302, 1181, 1373
SduI	GDGCHC	2 cut(s)	598, 1134
SfaNI	GCATC	4 cut(s)	619, 850, 1200, 1339
SfcI	CTRYAG	1 cut(s)	1473
Sfr303I	CCGCGG	2 cut(s)	436, 1217
SfuI	TTCGAA	1 cut(s)	103
SgrBI	CCGCGG	2 cut(s)	436, 1217
SinI	GGWCC	5 cut(s)	334, 353, 869, 1174, 1451
SmiMI	CAYNNNNRTG	1 cut(s)	1149
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
SpeI	ACTAGT	2 cut(s)	830, 1613
Sse9I	AATT	3 cut(s)	797, 965, 1358
SspI	AATATT	2 cut(s)	1067, 1570
SspMI	CTAG	4 cut(s)	675, 831, 1614, 1659
StyD4I	CCNGG	4 cut(s)	185, 300, 1179, 1371
StyI	CCWWGG	3 cut(s)	258, 573, 1436
TaaI	ACNGT	7 cut(s)	175, 425, 1005, 1032, 1148, 1422, 1505
TaiI	ACGT	2 cut(s)	674, 998
TaqI	TCGA	4 cut(s)	103, 636, 1237, 1456
TasI	AATT	3 cut(s)	797, 965, 1358
TatI	WGTACW	3 cut(s)	387, 420, 827
TauI	GCSGC	4 cut(s)	257, 719, 1216, 1408
TfiI	GAWTC	3 cut(s)	105, 916, 1586
Tru1I	TTAA	7 cut(s)	324, 342, 407, 417, 456, 840, 1257
Tru9I	TTAA	7 cut(s)	324, 342, 407, 417, 456, 840, 1257
TscAI	CASTG	5 cut(s)	253, 430, 1153, 1427, 1510
TseFI	GTSAC	3 cut(s)	5, 425, 1151
TseI	GCWGC	3 cut(s)	39, 1415, 1634
Tsp45I	GTSAC	3 cut(s)	5, 425, 1151
TspDTI	ATGAA	1 cut(s)	1421
TspRI	CASTG	5 cut(s)	253, 430, 1153, 1427, 1510
Van91I	CCANNNNNTGG	2 cut(s)	177, 662
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	5 cut(s)	334, 353, 869, 1174, 1451
XceI	RCATGY	2 cut(s)	371, 990
XspI	CTAG	4 cut(s)	675, 831, 1614, 1659
ZrmI	AGTACT	2 cut(s)	389, 829
Zsp2I	ATGCAT	2 cut(s)	634, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.