Rw3G020790
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006880
Physical Location & Seq
Forward (+)
24903303 .. 24907333
4031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020790.1

Sequence Viewer

Length: 876 bp
ATGAACGAGCAAAAGATAGATTGTATTCGTTCCTGGCATCAACACAGCCATGGACTAATTAGTGATCCTCACTTTGAACTTGGTAGTCATTCTTCTCACCAGCTCTTGGGTTTGCAACAACAGCCTTGGAACATGGAAGTTTGGCTTCAGCAACCCACCATGGATCAGGGAGTGTCACAGCTTCAAAATATTGGGCCTGCAAAATCACCAAGCAGCATTATGAGCCGATTTGAATCACCGGCTTCGGCTTTCTATGCAACCGAAAGATGCATGGGATTTCCTTCGCACTATGAGTCTCAAGTTGTTGGTAATCCTAATCCTCCACAGTTCCCTTCAGGCCAATCATATGAGGAAAGCTACTCAATGGAATCATCAGAGGACATCAGAAATACCTTGCAATCAATTGTGAAATCCCAAACCAACAGCTCTCAATCTTATAAATCCTCTGAGAAGTCTGATCAAATCCCAAGCAACCATTTGCCAGGCAGTAAGCTCTTTCTGCATCAAGATAGTACTAGTGGCTCAGTTAGGAGACCCTTTTCACTAGCTTTCAAAGAAAGTCAGGAACAAGTGAGCTTCTTTTCTCAGCAAGGAAAGCAGTCTCCAAGAACTTCCTCAGGAACGGTTTCTGCAGCCTCTGGTGATTCTTCTTCAACCAGCCCATCACTCTCGAGTAAAACACGAATACGATGGAATCAAGATCTTCACGAGAAGTTTGTTGAGTGTGTCAATCGTCTTGGGGGTGCTGACAAAGCAACACCTAAGGCGATACTGAAGATGATGGGATTGGAGGGACTAACCATCTTTCATGTCAAAAGTCATTTGCAGAAATATCGAATCGCAAAATATTTGCCAGACTCTGCAGAAGGAAAATGA

Protein Analysis

291

Amino Acids

32.37

Weight (kDa)

7.8

Isoelectric Point (pI)

75.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 230 - 279 2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccB7I CCANNNNNTGG 1 cut(s) 106
AclWI GGATC 2 cut(s) 59, 171
AcuI CTGAAG 3 cut(s) 131, 318, 794
AfaI GTAC 1 cut(s) 514
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 5 cut(s) 77, 185, 233, 553, 654
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 2 cut(s) 32, 481
AluBI AGCT 7 cut(s) 103, 181, 357, 426, 493, 548, 576
AluI AGCT 7 cut(s) 103, 181, 357, 426, 493, 548, 576
Alw26I GTCTC 3 cut(s) 300, 526, 606
AlwI GGATC 2 cut(s) 59, 171
AlwNI CAGNNNCTG 2 cut(s) 638, 860
Ama87I CYCGRG 1 cut(s) 670
AoxI GGCC 2 cut(s) 194, 337
ApeKI GCWGC 2 cut(s) 213, 632
Asp700I GAANNNNTTC 1 cut(s) 625
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 4 cut(s) 89, 198, 228, 653
AvaI CYCGRG 1 cut(s) 670
AxyI CCTNAGG 2 cut(s) 616, 762
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
BauI CACGAG 1 cut(s) 707
BbvI GCAGC 2 cut(s) 225, 644
BccI CCATC 4 cut(s) 670, 684, 775, 809
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BciT130I CCWGG 2 cut(s) 34, 483
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 3 cut(s) 300, 526, 606
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 2 cut(s) 516, 545
BfmI CTRYAG 2 cut(s) 630, 861
BglII AGATCT 1 cut(s) 700
BisI GCNGC 2 cut(s) 214, 633
BlsI GCNGC 2 cut(s) 215, 634
BmcAI AGTACT 1 cut(s) 514
Bme1390I CCNGG 2 cut(s) 34, 483
BmeT110I CYCGRG 1 cut(s) 670
BmgT120I GGNCC 1 cut(s) 194
BmrFI CCNGG 2 cut(s) 34, 483
BmsI GCATC 3 cut(s) 46, 257, 511
BpuEI CTTGAG 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 526
BsaJI CCNNGG 3 cut(s) 49, 125, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 238
Bse21I CCTNAGG 2 cut(s) 616, 762
Bse8I GATNNNNATC 1 cut(s) 232
BseBI CCWGG 2 cut(s) 34, 483
BseDI CCNNGG 3 cut(s) 49, 125, 159
BseJI GATNNNNATC 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 4 cut(s) 438, 537, 599, 630
BseXI GCAGC 2 cut(s) 225, 644
BshFI GGCC 2 cut(s) 196, 339
BsiHKCI CYCGRG 1 cut(s) 670
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 807
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 3 cut(s) 300, 526, 606
BsmFI GGGAC 1 cut(s) 807
BsnI GGCC 2 cut(s) 196, 339
Bso31I GGTCTC 1 cut(s) 526
BsoBI CYCGRG 1 cut(s) 670
Bsp143I GATC 4 cut(s) 64, 163, 457, 700
Bsp19I CCATGG 2 cut(s) 49, 159
BspANI GGCC 2 cut(s) 196, 339
BspCNI CTCAG 4 cut(s) 439, 536, 598, 629
BspMAI CTGCAG 2 cut(s) 634, 865
BspPI GGATC 2 cut(s) 59, 171
BspTNI GGTCTC 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 3 cut(s) 49, 125, 159
BssMI GATC 4 cut(s) 64, 163, 457, 700
BssSI CACGAG 1 cut(s) 707
BssT1I CCWWGG 3 cut(s) 49, 125, 159
Bst2BI CACGAG 1 cut(s) 707
Bst2UI CCWGG 2 cut(s) 34, 483
Bst4CI ACNGT 2 cut(s) 327, 625
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 5 cut(s) 447, 523, 585, 616, 762
BstDSI CCRYGG 2 cut(s) 49, 159
BstKTI GATC 4 cut(s) 67, 166, 460, 703
BstMAI GTCTC 3 cut(s) 300, 526, 606
BstMBI GATC 4 cut(s) 64, 163, 457, 700
BstMWI GCNNNNNNNGC 6 cut(s) 121, 222, 254, 499, 595, 752
BstNI CCWGG 2 cut(s) 34, 483
BstSCI CCNGG 2 cut(s) 32, 481
BstSFI CTRYAG 2 cut(s) 630, 861
BstV1I GCAGC 2 cut(s) 225, 644
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
Bsu36I CCTNAGG 2 cut(s) 616, 762
BsuRI GGCC 2 cut(s) 196, 339
BtgI CCRYGG 2 cut(s) 49, 159
Cac8I GCNNGC 1 cut(s) 198
CaiI CAGNNNCTG 2 cut(s) 638, 860
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 513
CviAII CATG 5 cut(s) 50, 133, 160, 271, 809
CviQI GTAC 1 cut(s) 513
DdeI CTNAG 5 cut(s) 447, 523, 585, 616, 762
DpnI GATC 4 cut(s) 66, 165, 459, 702
DpnII GATC 4 cut(s) 64, 163, 457, 700
Eco130I CCWWGG 3 cut(s) 49, 125, 159
Eco31I GGTCTC 1 cut(s) 526
Eco57I CTGAAG 3 cut(s) 131, 318, 794
Eco81I CCTNAGG 2 cut(s) 616, 762
Eco88I CYCGRG 1 cut(s) 670
EcoRII CCWGG 2 cut(s) 32, 481
EcoT14I CCWWGG 3 cut(s) 49, 125, 159
EcoT22I ATGCAT 1 cut(s) 272
ErhI CCWWGG 3 cut(s) 49, 125, 159
FaeI CATG 5 cut(s) 53, 136, 163, 274, 812
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 807
FatI CATG 5 cut(s) 49, 132, 159, 270, 808
FauNDI CATATG 1 cut(s) 346
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 2 cut(s) 214, 633
Fsp4HI GCNGC 2 cut(s) 214, 633
FspBI CTAG 2 cut(s) 516, 545
GluI GCNGC 2 cut(s) 214, 633
HaeIII GGCC 2 cut(s) 196, 339
HapII CCGG 1 cut(s) 239
Hin1II CATG 5 cut(s) 53, 136, 163, 274, 812
HinfI GANTC 7 cut(s) 233, 293, 368, 644, 694, 837, 857
HpaII CCGG 1 cut(s) 239
HphI GGTGA 4 cut(s) 89, 198, 228, 653
Hpy188I TCNGA 4 cut(s) 376, 386, 448, 457
Hpy188III TCNNGA 6 cut(s) 506, 563, 618, 670, 698, 707
HpyAV CCTTC 3 cut(s) 291, 342, 860
HpyCH4III ACNGT 2 cut(s) 327, 625
HpyCH4V TGCA 9 cut(s) 115, 200, 257, 270, 397, 502, 632, 826, 863
HpyF10VI GCNNNNNNNGC 6 cut(s) 121, 222, 254, 499, 595, 752
HpyF3I CTNAG 5 cut(s) 447, 523, 585, 616, 762
Hsp92II CATG 5 cut(s) 53, 136, 163, 274, 812
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 4 cut(s) 64, 163, 457, 700
Lsp1109I GCAGC 2 cut(s) 225, 644
LweI GCATC 3 cut(s) 46, 257, 511
MaeI CTAG 2 cut(s) 516, 545
MaeIII GTNAC 1 cut(s) 174
MalI GATC 4 cut(s) 66, 165, 459, 702
MboI GATC 4 cut(s) 64, 163, 457, 700
MboII GAAGA 5 cut(s) 84, 639, 642, 695, 787
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 1 cut(s) 700
MluCI AATT 2 cut(s) 57, 402
MlyI GAGTC 2 cut(s) 302, 851
MnlI CCTC 8 cut(s) 78, 330, 343, 370, 454, 625, 646, 784
Mph1103I ATGCAT 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 625
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 34, 483
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 2 cut(s) 34, 483
MwoI GCNNNNNNNGC 6 cut(s) 121, 222, 254, 499, 595, 752
NcoI CCATGG 2 cut(s) 49, 159
NdeI CATATG 1 cut(s) 346
NdeII GATC 4 cut(s) 64, 163, 457, 700
NlaIII CATG 5 cut(s) 53, 136, 163, 274, 812
NmuCI GTSAC 1 cut(s) 174
NsiI ATGCAT 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 670
PdmI GAANNNNTTC 1 cut(s) 625
PfeI GAWTC 5 cut(s) 233, 368, 644, 694, 837
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 2 cut(s) 215, 634
PleI GAGTC 2 cut(s) 301, 851
PpsI GAGTC 2 cut(s) 301, 851
PsiI TTATAA 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 32, 481
PspGI CCWGG 2 cut(s) 32, 481
PspPI GGNCC 1 cut(s) 194
PstI CTGCAG 2 cut(s) 634, 865
PstNI CAGNNNCTG 2 cut(s) 638, 860
PsuI RGATCY 1 cut(s) 700
RsaI GTAC 1 cut(s) 514
RsaNI GTAC 1 cut(s) 513
RseI CAYNNNNRTG 1 cut(s) 48
SatI GCNGC 2 cut(s) 214, 633
Sau3AI GATC 4 cut(s) 64, 163, 457, 700
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 514
SchI GAGTC 2 cut(s) 302, 851
ScrFI CCNGG 2 cut(s) 34, 483
SetI ASST 9 cut(s) 105, 183, 359, 395, 428, 495, 550, 578, 763
SfaNI GCATC 3 cut(s) 46, 257, 511
SfcI CTRYAG 2 cut(s) 630, 861
Sfr274I CTCGAG 1 cut(s) 670
SlaI CTCGAG 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 2 cut(s) 297, 670
SmoI CTYRAG 2 cut(s) 297, 670
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 2 cut(s) 57, 402
SspI AATATT 2 cut(s) 190, 848
SspMI CTAG 2 cut(s) 516, 545
StyD4I CCNGG 2 cut(s) 32, 481
StyI CCWWGG 3 cut(s) 49, 125, 159
TaaI ACNGT 2 cut(s) 327, 625
TaqI TCGA 2 cut(s) 671, 835
TasI AATT 2 cut(s) 57, 402
TatI WGTACW 1 cut(s) 512
TfiI GAWTC 5 cut(s) 233, 368, 644, 694, 837
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 2 cut(s) 213, 632
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 17, 797
Van91I CCANNNNNTGG 1 cut(s) 106
XhoI CTCGAG 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 625
XspI CTAG 2 cut(s) 516, 545
ZrmI AGTACT 1 cut(s) 514
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.