Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

25554709 .. 25558788

Gene Structure 4080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAACGAGCAAAAGATAGATTGCCAGGAACGAATACATCAACACAGCCATGGACTAATTAGTGATCCTAACTTTGAACTTGGTAGTCATTCTTCTCACCAGCTCTTGGGTCTACAACAACAGCCTTGGAACATGGAAGTTTGGCTTCAGCAACCCACCATGGATCAGGGAGTGTCACAGCTTCAAAATATTGGGCCTGCAAAATCACCAAGCAGCATTATGAGCCGATTTGAATCACCGGCTTCGGCTTTCTATGCAACGGAAATATGCATGGGATTTCCTTCGCACTATGAGTCTCAAGTTGTTGGTAATCCTAATCCTCCACAGTTCCCTTCAGGCCAATCATATGAGGAAAGCTACTCAATGGAATCATCAGAGGACATCAGAAATACCTTGCAATCAATTGTGAAATCCCAAACCAACAGCTCTCAATCTTATAAATCCTCTGAGAAGTCTAATCAAATCCCAAGCAACCATTTGCCAGGCAGTAAGCTCTTTCTGCATCAACAAATGCATCAAGATAGTACTAGTGGCTCAGTTAGGAGACCCTTTTCACTTGCTTTCAAAGAAAATCAGGAACAAGTGAGCTTCTTTTCTCAGCAAGCAAAGCAGTCTCCAAGAACTTCCTCAGGAACGGTTTCTGCAACCTCTGGTGATTCTTCTTCAACCAGCCCATCACTCTCGAGTAAAACACGAATACGATGGAATCAAGATCTTCACGAGAAGTTTGTTGAGTGTGTCAATCGTCTTGGGGGTGCTGACAAAGCAACACCTAAGGCAATACTGAAGATGATGGGATTGGAGGGACTAACCATCTTTCATGTCAAAAGTCATTTGCAGAAATATCGAATCGCAAAATATTTGCCAGACTCTGCAGAAGGAAAATCTGAGAAAAGAGCTAATGTGAATGTCGAACCTCAGCTTGATGTGAAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

312

Amino Acids

34.79

Weight (kDa)

7.21

Isoelectric Point (pI)

73.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	234 - 283	2.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	112
AclWI	GGATC	2 cut(s)	59, 171
AcuI	CTGAAG	3 cut(s)	131, 318, 806
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	5 cut(s)	77, 185, 233, 565, 666
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	2 cut(s)	24, 481
AluBI	AGCT	8 cut(s)	103, 181, 357, 426, 493, 588, 899, 922
AluI	AGCT	8 cut(s)	103, 181, 357, 426, 493, 588, 899, 922
Alw26I	GTCTC	3 cut(s)	300, 538, 618
AlwI	GGATC	2 cut(s)	59, 171
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	682
AoxI	GGCC	2 cut(s)	194, 337
ApeKI	GCWGC	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	637
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	4 cut(s)	89, 198, 228, 665
AvaI	CYCGRG	1 cut(s)	682
AxyI	CCTNAGG	2 cut(s)	628, 774
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	719
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	4 cut(s)	682, 696, 787, 821
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	2 cut(s)	26, 483
BcoDI	GTCTC	3 cut(s)	300, 538, 618
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	873
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	2 cut(s)	26, 483
BmeT110I	CYCGRG	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	2 cut(s)	26, 483
BmsI	GCATC	2 cut(s)	511, 523
Bpu10I	CCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	49, 125, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	238
Bse21I	CCTNAGG	2 cut(s)	628, 774
Bse8I	GATNNNNATC	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	26, 483
BseDI	CCNNGG	3 cut(s)	49, 125, 159
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	6 cut(s)	438, 549, 611, 642, 879, 932
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	2 cut(s)	196, 339
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	3 cut(s)	300, 538, 618
BsmFI	GGGAC	1 cut(s)	819
BsnI	GGCC	2 cut(s)	196, 339
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	64, 163, 712
Bsp19I	CCATGG	2 cut(s)	49, 159
BspANI	GGCC	2 cut(s)	196, 339
BspCNI	CTCAG	6 cut(s)	439, 548, 610, 641, 880, 931
BspMAI	CTGCAG	1 cut(s)	877
BspPI	GGATC	2 cut(s)	59, 171
BspTNI	GGTCTC	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	49, 125, 159
BssMI	GATC	3 cut(s)	64, 163, 712
BssSI	CACGAG	1 cut(s)	719
BssT1I	CCWWGG	3 cut(s)	49, 125, 159
Bst2BI	CACGAG	1 cut(s)	719
Bst2UI	CCWGG	2 cut(s)	26, 483
Bst4CI	ACNGT	2 cut(s)	327, 637
BstC8I	GCNNGC	2 cut(s)	198, 603
BstDEI	CTNAG	7 cut(s)	447, 535, 597, 628, 774, 888, 918
BstDSI	CCRYGG	2 cut(s)	49, 159
BstKTI	GATC	3 cut(s)	67, 166, 715
BstMAI	GTCTC	3 cut(s)	300, 538, 618
BstMBI	GATC	3 cut(s)	64, 163, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	222, 254, 499, 607, 764
BstNI	CCWGG	2 cut(s)	26, 483
BstSCI	CCNGG	2 cut(s)	24, 481
BstSFI	CTRYAG	1 cut(s)	873
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
Bsu36I	CCTNAGG	2 cut(s)	628, 774
BsuRI	GGCC	2 cut(s)	196, 339
BtgI	CCRYGG	2 cut(s)	49, 159
Cac8I	GCNNGC	2 cut(s)	198, 603
CaiI	CAGNNNCTG	1 cut(s)	872
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	5 cut(s)	50, 133, 160, 271, 821
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	7 cut(s)	447, 535, 597, 628, 774, 888, 918
DpnI	GATC	3 cut(s)	66, 165, 714
DpnII	GATC	3 cut(s)	64, 163, 712
Eco130I	CCWWGG	3 cut(s)	49, 125, 159
Eco31I	GGTCTC	1 cut(s)	538
Eco57I	CTGAAG	3 cut(s)	131, 318, 806
Eco81I	CCTNAGG	2 cut(s)	628, 774
Eco88I	CYCGRG	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	24, 481
EcoT14I	CCWWGG	3 cut(s)	49, 125, 159
EcoT22I	ATGCAT	2 cut(s)	272, 516
ErhI	CCWWGG	3 cut(s)	49, 125, 159
FaeI	CATG	5 cut(s)	53, 136, 163, 274, 824
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	5 cut(s)	49, 132, 159, 270, 820
FauNDI	CATATG	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	196, 339
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	5 cut(s)	53, 136, 163, 274, 824
HinfI	GANTC	7 cut(s)	233, 293, 368, 656, 706, 849, 869
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	4 cut(s)	89, 198, 228, 665
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	4 cut(s)	376, 386, 448, 889
Hpy188III	TCNNGA	6 cut(s)	518, 575, 630, 682, 710, 719
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	3 cut(s)	291, 342, 872
HpyCH4III	ACNGT	2 cut(s)	327, 637
HpyCH4IV	ACGT	1 cut(s)	935
HpyCH4V	TGCA	9 cut(s)	200, 257, 270, 397, 502, 514, 644, 838, 875
HpyF10VI	GCNNNNNNNGC	5 cut(s)	222, 254, 499, 607, 764
HpyF3I	CTNAG	7 cut(s)	447, 535, 597, 628, 774, 888, 918
HpySE526I	ACGT	1 cut(s)	935
Hsp92II	CATG	5 cut(s)	53, 136, 163, 274, 824
Kzo9I	GATC	3 cut(s)	64, 163, 712
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	2 cut(s)	511, 523
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	935
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	66, 165, 714
MboI	GATC	3 cut(s)	64, 163, 712
MboII	GAAGA	5 cut(s)	84, 651, 654, 707, 799
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	712
MluCI	AATT	2 cut(s)	57, 402
MlyI	GAGTC	2 cut(s)	302, 863
MnlI	CCTC	8 cut(s)	330, 343, 370, 454, 637, 658, 796, 927
Mph1103I	ATGCAT	2 cut(s)	272, 516
MroXI	GAANNNNTTC	1 cut(s)	637
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	26, 483
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	26, 483
MwoI	GCNNNNNNNGC	5 cut(s)	222, 254, 499, 607, 764
NcoI	CCATGG	2 cut(s)	49, 159
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	3 cut(s)	64, 163, 712
NlaIII	CATG	5 cut(s)	53, 136, 163, 274, 824
NmuCI	GTSAC	1 cut(s)	174
NsiI	ATGCAT	2 cut(s)	272, 516
PaeR7I	CTCGAG	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	637
PfeI	GAWTC	5 cut(s)	233, 368, 656, 706, 849
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	301, 863
PpsI	GAGTC	2 cut(s)	301, 863
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	24, 481
PspGI	CCWGG	2 cut(s)	24, 481
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	877
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	48
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	64, 163, 712
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	2 cut(s)	302, 863
ScrFI	CCNGG	2 cut(s)	26, 483
SfaNI	GCATC	2 cut(s)	511, 523
SfcI	CTRYAG	1 cut(s)	873
Sfr274I	CTCGAG	1 cut(s)	682
SlaI	CTCGAG	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	297, 682
SmoI	CTYRAG	2 cut(s)	297, 682
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	2 cut(s)	57, 402
SspI	AATATT	2 cut(s)	190, 860
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	24, 481
StyI	CCWWGG	3 cut(s)	49, 125, 159
TaaI	ACNGT	2 cut(s)	327, 637
TaiI	ACGT	1 cut(s)	938
TaqI	TCGA	3 cut(s)	683, 847, 912
TasI	AATT	2 cut(s)	57, 402
TatI	WGTACW	1 cut(s)	524
TfiI	GAWTC	5 cut(s)	233, 368, 656, 706, 849
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	17, 809
TspGWI	ACGGA	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	637
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	2 cut(s)	272, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.