Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

15425966 .. 15429585

Gene Structure 3620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0180000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCCACGAAAGCCTTCCTACTCTATCTCCTCTCTACTTTCTCGGTTGCTATTCTCTCCGTGCTATTCTTCACTCATCAGAATGATCACATCTCTTACCAAACCCGCCTCTCTTCTCTCAATTCCAATCTAGAGCACTTGGAAGCAACGGAGACAGTGTGGCCGGATTTGGCGTTTAACTGGAGACTTGTGCTGGCCACAGTGATTGGTTTTCTGGGATCGGCGTGTGGAACTGTGGGAGGGGTAGGAGGGGGTGGTATATTTGTCCCTATGCTTACCTTGATTGTTGGCTTTGATACAAAGTCGGCTGCTGCTATTTCCAAATGTATGATAATGGGGGCTTCTGCATCATCAGTGTGGTACAACTTGAGGGTGCCTCATCCTACAAAGGAAGTACCCATAATAGATTATGATCTGGCACTTCTCTTTCAGCCCATGCTCATGCTTGGGATCACACTTGGTGTGGCTCTCAGCGTGGTCTTCCCCTACTGGCTCATCACTGTTCTCATCATTATTCTCTTCTTGGGCACTTCATCAAGGTCTGCTTACAAAGGGGTTGAGATGTGGAAGGAAGAGACTATGTTAAAGAGGGAATTGGCAAACCAACATGAAGCTCGAGTTGACTCTCGTGGCGAACTTCTAATTGATACAGAATATCAGCAATTAAATCCCAGAGAAGAAAAGTCAATGATGCAAACACTATGTTTCAACCTCAGGTGGAAAAGGGTGATGGTGCTAGTAATTCTTTGGGGGGCTTTTCTACTTCTTCAAATCATCAAGAATGATTTAGCTACTTGCAGTACATGGTATTGGGTTCTCTTCTGCTTACAGTTTCCTATAGCATTTGGCGTTTTTGGATATGAAGCACGCAAGTTGTACAAAGATCACAAGAAGAGAATGGGCACAGGGAATTTAGAATCAATTTGTGAGGCTTCAATTGCATGGACTCCAATCCACATAGCATTTTGTGCACTCTGTGGTATCTTGGGAGGCACTGTTGGGGGTCTGCTTGGATCTGGTGGAGGATTTATTCTTGGCCCTCTCCTACTAGAAATAGGTGTTATCCCACAGGTTGCTAGTGCAACAGCTACATTTGTGATGATGTTCTCAGCATCCTTATCGGTGGTGGAGTTCTACCTCCTCAAGCGGTTTCCTATTCCATATGCTTTGTACCTTACAAGTGTTTCTATCTTGGCTGGCTTTTGGGGACAGTTTCTTGTAAGGAAAATAGTTACATTTCTCAAGAGAGCATCAATCATAGTATTCGTCCTCTCAGGTGTCATCTTTGCTAGTGCCATCACAATGGGTGTCACTGGCATCACATCGAGCCTCCAAATGATGGAAGATGGCGATTTTATGGGTTTCTTGGACTTCTGTAGCAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

462

Amino Acids

51.0

Weight (kDa)

7.55

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TauE	PF01925	68 - 183	1.4e-12	Sulfite exporter TauE/SafE
TauE	PF01925	248 - 427	1.1e-10	Sulfite exporter TauE/SafE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	373
AccB7I	CCANNNNNTGG	1 cut(s)	1339
AciI	CCGC	2 cut(s)	106, 1147
AclWI	GGATC	3 cut(s)	226, 458, 1021
AcoI	YGGCCR	3 cut(s)	3, 161, 195
AcsI	RAATTY	1 cut(s)	910
AdeI	CACNNNGTG	2 cut(s)	461, 977
AfaI	GTAC	5 cut(s)	362, 396, 802, 878, 1172
AfiI	CCNNNNNNNGG	1 cut(s)	1339
AgsI	TTSAA	3 cut(s)	709, 770, 936
AluBI	AGCT	3 cut(s)	614, 791, 1088
AluI	AGCT	3 cut(s)	614, 791, 1088
Alw21I	GWGCWC	2 cut(s)	138, 973
Alw26I	GTCTC	3 cut(s)	146, 178, 569
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	3 cut(s)	226, 458, 1021
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	4 cut(s)	3, 161, 195, 1036
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	2 cut(s)	308, 311
ApoI	RAATTY	1 cut(s)	910
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	1037
AsuHPI	GGTGA	1 cut(s)	739
AvaI	CYCGRG	1 cut(s)	615
AxyI	CCTNAGG	1 cut(s)	713
BaeGI	GKGCMC	3 cut(s)	530, 905, 973
BalI	TGGCCA	2 cut(s)	5, 197
BanI	GGYRCC	1 cut(s)	373
BauI	CACGAG	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	472
Bbv12I	GWGCWC	2 cut(s)	138, 973
BbvI	GCAGC	2 cut(s)	295, 298
BccI	CCATC	4 cut(s)	724, 1304, 1333, 1340
BcgI	CGANNNNNNTGC	2 cut(s)	1101, 1135
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	3 cut(s)	146, 178, 569
BfaI	CTAG	5 cut(s)	131, 737, 1049, 1077, 1290
BfmI	CTRYAG	2 cut(s)	837, 1375
BisI	GCNGC	2 cut(s)	309, 312
BlsI	GCNGC	2 cut(s)	310, 313
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	1037
BmiI	GGNNCC	1 cut(s)	375
BmsI	GCATC	5 cut(s)	356, 681, 1121, 1259, 1326
BpiI	GAAGAC	1 cut(s)	472
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	202
BpuEI	CTTGAG	3 cut(s)	388, 1127, 1226
BsaBI	GATNNNNATC	1 cut(s)	411
BsaXI	ACNNNNNCTCC	6 cut(s)	12, 42, 143, 173, 981, 1011
Bsc4I	CCNNNNNNNGG	1 cut(s)	1339
Bse1I	ACTGG	3 cut(s)	185, 494, 1318
Bse21I	CCTNAGG	1 cut(s)	713
Bse8I	GATNNNNATC	1 cut(s)	411
BseGI	GGATG	2 cut(s)	379, 1112
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	1339
BseMII	CTCAG	4 cut(s)	484, 727, 1122, 1287
BseNI	ACTGG	3 cut(s)	185, 494, 1318
BseRI	GAGGAG	2 cut(s)	20, 1130
BseSI	GKGCMC	3 cut(s)	530, 905, 973
BseXI	GCAGC	2 cut(s)	295, 298
BshFI	GGCC	4 cut(s)	5, 163, 197, 1038
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	2 cut(s)	138, 973
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	2 cut(s)	251, 1221
BslI	CCNNNNNNNGG	1 cut(s)	1339
BsmAI	GTCTC	3 cut(s)	146, 178, 569
BsmFI	GGGAC	2 cut(s)	251, 1221
BsnI	GGCC	4 cut(s)	5, 163, 197, 1038
BsoBI	CYCGRG	1 cut(s)	615
Bsp1286I	GDGCHC	4 cut(s)	138, 530, 905, 973
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	6 cut(s)	85, 218, 412, 450, 883, 1013
BspACI	CCGC	2 cut(s)	106, 1147
BspANI	GGCC	4 cut(s)	5, 163, 197, 1038
BspCNI	CTCAG	4 cut(s)	483, 726, 1121, 1286
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	3 cut(s)	226, 458, 1021
BspT107I	GGYRCC	1 cut(s)	373
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	3 cut(s)	185, 494, 1318
BssMI	GATC	6 cut(s)	85, 218, 412, 450, 883, 1013
BssSI	CACGAG	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	627
Bst4CI	ACNGT	7 cut(s)	157, 202, 235, 502, 831, 997, 1212
Bst6I	CTCTTC	5 cut(s)	118, 524, 567, 824, 887
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstAUI	TGTACA	1 cut(s)	876
BstC8I	GCNNGC	3 cut(s)	195, 868, 1198
BstDEI	CTNAG	4 cut(s)	470, 713, 1108, 1273
BstF5I	GGATG	2 cut(s)	379, 1112
BstKTI	GATC	6 cut(s)	88, 221, 415, 453, 886, 1016
BstMAI	GTCTC	3 cut(s)	146, 178, 569
BstMBI	GATC	6 cut(s)	85, 218, 412, 450, 883, 1013
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 938, 968
BstSFI	CTRYAG	2 cut(s)	837, 1375
BstSLI	GKGCMC	3 cut(s)	530, 905, 973
BstV1I	GCAGC	2 cut(s)	295, 298
BstV2I	GAAGAC	1 cut(s)	472
BstX2I	RGATCY	1 cut(s)	1013
BstXI	CCANNNNNNTGG	1 cut(s)	1303
BstYI	RGATCY	1 cut(s)	1013
Bsu36I	CCTNAGG	1 cut(s)	713
BsuRI	GGCC	4 cut(s)	5, 163, 197, 1038
BtsCI	GGATG	2 cut(s)	379, 1112
BtsIMutI	CAGTG	6 cut(s)	162, 207, 360, 498, 993, 1311
Cac8I	GCNNGC	3 cut(s)	195, 868, 1198
Cfr13I	GGNCC	1 cut(s)	1037
Csp6I	GTAC	5 cut(s)	361, 395, 801, 877, 1171
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	5 cut(s)	436, 442, 608, 804, 942
CviQI	GTAC	5 cut(s)	361, 395, 801, 877, 1171
DdeI	CTNAG	4 cut(s)	470, 713, 1108, 1273
DpnI	GATC	6 cut(s)	87, 220, 414, 452, 885, 1015
DpnII	GATC	6 cut(s)	85, 218, 412, 450, 883, 1013
DraIII	CACNNNGTG	2 cut(s)	461, 977
EaeI	YGGCCR	3 cut(s)	3, 161, 195
Eam1104I	CTCTTC	5 cut(s)	118, 524, 567, 824, 887
EarI	CTCTTC	5 cut(s)	118, 524, 567, 824, 887
Eco81I	CCTNAGG	1 cut(s)	713
Eco88I	CYCGRG	1 cut(s)	615
FaeI	CATG	5 cut(s)	439, 445, 611, 807, 945
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FaqI	GGGAC	2 cut(s)	251, 1221
FatI	CATG	5 cut(s)	435, 441, 607, 803, 941
FauI	CCCGC	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	1162
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	309, 312
FokI	GGATG	2 cut(s)	366, 1099
Fsp4HI	GCNGC	2 cut(s)	309, 312
FspBI	CTAG	5 cut(s)	131, 737, 1049, 1077, 1290
GluI	GCNGC	2 cut(s)	309, 312
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	4 cut(s)	5, 163, 197, 1038
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	5 cut(s)	439, 445, 611, 807, 945
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	3 cut(s)	623, 917, 946
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	2 cut(s)	622, 971
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	3 cut(s)	131, 778, 1243
Hpy8I	GTNNAC	2 cut(s)	622, 971
HpyAV	CCTTC	2 cut(s)	25, 562
HpyCH4III	ACNGT	7 cut(s)	157, 202, 235, 502, 831, 997, 1212
HpyCH4V	TGCA	6 cut(s)	347, 694, 798, 941, 971, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 938, 968
HpyF3I	CTNAG	4 cut(s)	470, 713, 1108, 1273
Hsp92II	CATG	5 cut(s)	439, 445, 611, 807, 945
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	6 cut(s)	85, 218, 412, 450, 883, 1013
Lsp1109I	GCAGC	2 cut(s)	295, 298
LweI	GCATC	5 cut(s)	356, 681, 1121, 1259, 1326
MaeI	CTAG	5 cut(s)	131, 737, 1049, 1077, 1290
MaeIII	GTNAC	2 cut(s)	1231, 1309
MalI	GATC	6 cut(s)	87, 220, 414, 452, 885, 1015
MboI	GATC	6 cut(s)	85, 218, 412, 450, 883, 1013
MfeI	CAATTG	1 cut(s)	936
MflI	RGATCY	1 cut(s)	1013
MhlI	GDGCHC	4 cut(s)	138, 530, 905, 973
MlsI	TGGCCA	2 cut(s)	5, 197
MluCI	AATT	8 cut(s)	121, 593, 642, 662, 741, 910, 921, 936
MluNI	TGGCCA	2 cut(s)	5, 197
MlyI	GAGTC	2 cut(s)	617, 940
Mox20I	TGGCCA	2 cut(s)	5, 197
MroXI	GAANNNNTTC	1 cut(s)	14
MscI	TGGCCA	2 cut(s)	5, 197
MseI	TTAA	3 cut(s)	177, 584, 665
MslI	CAYNNNNRTG	4 cut(s)	81, 355, 440, 1301
Msp20I	TGGCCA	2 cut(s)	5, 197
MspI	CCGG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	936
MwoI	GCNNNNNNNGC	3 cut(s)	11, 938, 968
NdeI	CATATG	1 cut(s)	1162
NdeII	GATC	6 cut(s)	85, 218, 412, 450, 883, 1013
NlaIII	CATG	5 cut(s)	439, 445, 611, 807, 945
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	1309
PaeR7I	CTCGAG	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	917
PflMI	CCANNNNNTGG	1 cut(s)	1339
PkrI	GCNGC	2 cut(s)	310, 313
PleI	GAGTC	2 cut(s)	617, 940
PpsI	GAGTC	2 cut(s)	617, 940
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	1037
PspXI	VCTCGAGB	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	1013
RsaI	GTAC	5 cut(s)	362, 396, 802, 878, 1172
RsaNI	GTAC	5 cut(s)	361, 395, 801, 877, 1171
RseI	CAYNNNNRTG	4 cut(s)	81, 355, 440, 1301
SaqAI	TTAA	3 cut(s)	177, 584, 665
SatI	GCNGC	2 cut(s)	309, 312
Sau3AI	GATC	6 cut(s)	85, 218, 412, 450, 883, 1013
Sau96I	GGNCC	1 cut(s)	1037
SchI	GAGTC	2 cut(s)	617, 940
SduI	GDGCHC	4 cut(s)	138, 530, 905, 973
SfaNI	GCATC	5 cut(s)	356, 681, 1121, 1259, 1326
SfcI	CTRYAG	2 cut(s)	837, 1375
Sfr274I	CTCGAG	1 cut(s)	615
SlaI	CTCGAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	4 cut(s)	81, 355, 440, 1301
SmlI	CTYRAG	4 cut(s)	367, 615, 1142, 1241
SmoI	CTYRAG	4 cut(s)	367, 615, 1142, 1241
Sse9I	AATT	8 cut(s)	121, 593, 642, 662, 741, 910, 921, 936
SsiI	CCGC	2 cut(s)	106, 1147
SspMI	CTAG	5 cut(s)	131, 737, 1049, 1077, 1290
TaaI	ACNGT	7 cut(s)	157, 202, 235, 502, 831, 997, 1212
TaqI	TCGA	2 cut(s)	616, 1325
TasI	AATT	8 cut(s)	121, 593, 642, 662, 741, 910, 921, 936
TatI	WGTACW	2 cut(s)	800, 876
TfiI	GAWTC	1 cut(s)	917
Tru1I	TTAA	3 cut(s)	177, 584, 665
Tru9I	TTAA	3 cut(s)	177, 584, 665
TscAI	CASTG	6 cut(s)	162, 207, 360, 505, 1000, 1318
TseFI	GTSAC	1 cut(s)	1309
TseI	GCWGC	2 cut(s)	308, 311
Tsp45I	GTSAC	1 cut(s)	1309
TspDTI	ATGAA	3 cut(s)	522, 624, 876
TspGWI	ACGGA	2 cut(s)	49, 164
TspRI	CASTG	6 cut(s)	162, 207, 360, 505, 1000, 1318
Van91I	CCANNNNNTGG	1 cut(s)	1339
VneI	GTGCAC	1 cut(s)	969
XapI	RAATTY	1 cut(s)	910
XbaI	TCTAGA	1 cut(s)	130
XhoI	CTCGAG	1 cut(s)	615
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	5 cut(s)	131, 737, 1049, 1077, 1290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.