Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

16214625 .. 16217373

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAACGAGCAGAAGATTGATTGCCAGGAACGAATTTATCAACACAACCATGGACTAATCAGTGATTCTAACTTTGAACTTGGTAGCCATTCTTCTCATCAGCTCTTGGATCTTCAACAACTGCCTTGGAACATGGGAGTTTGGGTTCAGCAACCTACCACGGATCAAGGAGTGTCACAGCTTCAAAATCTTGGGCCTGAAAAATCACCAAGCAGCATTATGAGCCGATTTGAATCACCGGCTTCGCTTTTCTATGCAGCTGAAAGATGCATGGGATTTCCTGCACACTATGAGTCTCAAGATGGTGGTAGTCCTAATCTTCCACAGTTTCCTTCAGGCCAATCTTTTGTGGAAAGCTACTCAATGGAATCATCAGAGGACATCAGAAACACCTTGCAATCAATTGTGAAATCCCAAACCAACAGCTCTCAGTCTTACAAATCCTTTGAGAAGTCTAATCAAATCCCGAACAACAATTTGAGAGGCAATAAACTCTTTCTGCATCAACATATGAATCAAGATAGCACTACTGCCTCAGTTAGGAGACCCTTTTCACTTGCTTTCAAAGAAAATCAGGAACAAGTGAGCTTCTTTTCTCAGCAAGCAAAGCAGTCTTCAAGAACTTCCTCCGGAACTACATCTGCAACTTATGCTGATTCTTCTTCAACCAGCCCATCACTCTCGAGTAAAACACGTATACGATGGAATCAAGATCTTCATGAGAAGTTTGTTGAGTGTGTAAATCGTCTTGGGGGTGCTGACAAAGCAACACCTAAGGCAATACTGAAGATGATGGGCTTGGAGGGATTGACCATCTTTCATGTCAAGAGTCATCTGCAGAAATATCGAATTGCAAAATATTTGCCAGACTCTGCAGAAGGAAAATCAGAGAAAAGGGCTAATGTGAATGTCGAACCTCAGCTCGATGTGAAAACTGGCTTGCAAATCACAGAGGCACTGCAACTACAACTAGATGTCCAGAGGCAACTTCACGAACAACTAGAGATACAGCGAAAATTACAGTTGCGCATTGAAAAACAAGGGGAGCAGCTTAAGAAAATGTTTGACCTGCAGCAAAAAACAAGTGATAACATGTCAAAGACTCCAAACGTAGATTTCACATGCCACGAAGATGGTCCATCAAATAATGAAATTCAAGTTTCAAGTCCTGAGGGTTCAGGGAATTCCCACTTTCCATCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

404

Amino Acids

45.38

Weight (kDa)

6.68

Isoelectric Point (pI)

69.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	234 - 283	3.3e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	314 - 361	1.4e-17	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1028
Acc36I	ACCTGC	1 cut(s)	1077
AccI	GTMKAC	1 cut(s)	697
AccIII	TCCGGA	1 cut(s)	629
AclWI	GGATC	2 cut(s)	117, 171
AcsI	RAATTY	3 cut(s)	33, 1152, 1183
AcuI	CTGAAG	2 cut(s)	318, 806
AfiI	CCNNNNNNNGG	1 cut(s)	540
AflII	CTTAAG	1 cut(s)	1052
AflIII	ACRYGT	2 cut(s)	692, 1092
AjnI	CCWGG	1 cut(s)	24
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	8 cut(s)	103, 181, 260, 357, 426, 588, 922, 1051
AluI	AGCT	8 cut(s)	103, 181, 260, 357, 426, 588, 922, 1051
Alw26I	GTCTC	2 cut(s)	300, 538
AlwI	GGATC	2 cut(s)	117, 171
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	682
Aor13HI	TCCGGA	1 cut(s)	629
AoxI	GGCC	2 cut(s)	194, 337
ApeKI	GCWGC	4 cut(s)	213, 257, 1048, 1072
ApoI	RAATTY	3 cut(s)	33, 1152, 1183
AspLEI	GCGC	1 cut(s)	1029
AspS9I	GGNCC	2 cut(s)	194, 1136
AsuHPI	GGTGA	2 cut(s)	198, 228
AvaI	CYCGRG	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	1136
AxyI	CCTNAGG	2 cut(s)	774, 1170
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BbsI	GAAGAC	1 cut(s)	606
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	4 cut(s)	225, 269, 1060, 1084
BccI	CCATC	8 cut(s)	296, 682, 696, 787, 821, 1127, 1147, 1204
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	300, 538
BfaI	CTAG	2 cut(s)	971, 1001
BfmI	CTRYAG	3 cut(s)	836, 873, 1070
BfrI	CTTAAG	1 cut(s)	1052
BfuAI	ACCTGC	1 cut(s)	1077
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	4 cut(s)	214, 258, 1049, 1073
BlsI	GCNGC	4 cut(s)	215, 259, 1050, 1074
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	1136
BmeT110I	CYCGRG	1 cut(s)	682
BmgT120I	GGNCC	2 cut(s)	194, 1136
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	257, 511
BpiI	GAAGAC	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	695
BsaBI	GATNNNNATC	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	49, 125, 159
BsaWI	WCCGGW	1 cut(s)	629
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	940
Bse21I	CCTNAGG	2 cut(s)	774, 1170
Bse8I	GATNNNNATC	1 cut(s)	232
BseAI	TCCGGA	1 cut(s)	629
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	49, 125, 159
BseGI	GGATG	1 cut(s)	1196
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMII	CTCAG	5 cut(s)	443, 549, 611, 932, 1161
BseNI	ACTGG	1 cut(s)	940
BseXI	GCAGC	4 cut(s)	225, 269, 1060, 1084
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	196, 339
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	2 cut(s)	239, 630
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	2 cut(s)	300, 538
BsnI	GGCC	2 cut(s)	196, 339
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	682
Bsp13I	TCCGGA	1 cut(s)	629
Bsp143I	GATC	3 cut(s)	109, 163, 712
Bsp19I	CCATGG	1 cut(s)	49
BspANI	GGCC	2 cut(s)	196, 339
BspCNI	CTCAG	5 cut(s)	442, 548, 610, 931, 1162
BspEI	TCCGGA	1 cut(s)	629
BspHI	TCATGA	1 cut(s)	718
BspMAI	CTGCAG	3 cut(s)	840, 877, 1074
BspMI	ACCTGC	1 cut(s)	1077
BspPI	GGATC	2 cut(s)	117, 171
BspTI	CTTAAG	1 cut(s)	1052
BspTNI	GGTCTC	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	940
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	49, 125, 159
BssMI	GATC	3 cut(s)	109, 163, 712
BssNAI	GTATAC	1 cut(s)	698
BssT1I	CCWWGG	2 cut(s)	49, 125
Bst1107I	GTATAC	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	327, 1023
BstAFI	CTTAAG	1 cut(s)	1052
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	695
BstC8I	GCNNGC	2 cut(s)	603, 941
BstDEI	CTNAG	6 cut(s)	429, 535, 597, 774, 918, 1170
BstDSI	CCRYGG	2 cut(s)	49, 159
BstENI	CCTNNNNNAGG	1 cut(s)	538
BstF5I	GGATG	1 cut(s)	1196
BstHHI	GCGC	1 cut(s)	1029
BstKTI	GATC	3 cut(s)	112, 166, 715
BstMAI	GTCTC	2 cut(s)	300, 538
BstMBI	GATC	3 cut(s)	109, 163, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 607, 650, 764
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	2 cut(s)	1096, 1125
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	3 cut(s)	836, 873, 1070
BstV1I	GCAGC	4 cut(s)	225, 269, 1060, 1084
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	2 cut(s)	109, 712
BstXI	CCANNNNNNTGG	1 cut(s)	1133
BstYI	RGATCY	2 cut(s)	109, 712
BstZ17I	GTATAC	1 cut(s)	698
Bsu36I	CCTNAGG	2 cut(s)	774, 1170
BsuRI	GGCC	2 cut(s)	196, 339
BtgI	CCRYGG	2 cut(s)	49, 159
BtsCI	GGATG	1 cut(s)	1196
BtsI	GCAGTG	1 cut(s)	956
BtsIMutI	CAGTG	2 cut(s)	67, 956
BveI	ACCTGC	1 cut(s)	1077
Cac8I	GCNNGC	2 cut(s)	603, 941
CaiI	CAGNNNCTG	1 cut(s)	872
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	1 cut(s)	1029
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	194, 1136
CviAII	CATG	7 cut(s)	50, 133, 271, 719, 821, 1093, 1122
DdeI	CTNAG	6 cut(s)	429, 535, 597, 774, 918, 1170
DpnI	GATC	3 cut(s)	111, 165, 714
DpnII	GATC	3 cut(s)	109, 163, 712
Eco130I	CCWWGG	2 cut(s)	49, 125
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	1136
Eco57I	CTGAAG	2 cut(s)	318, 806
Eco81I	CCTNAGG	2 cut(s)	774, 1170
Eco88I	CYCGRG	1 cut(s)	682
EcoNI	CCTNNNNNAGG	1 cut(s)	538
EcoRI	GAATTC	1 cut(s)	1183
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	49, 125
EcoT22I	ATGCAT	1 cut(s)	272
ErhI	CCWWGG	2 cut(s)	49, 125
FaeI	CATG	7 cut(s)	53, 136, 274, 722, 824, 1096, 1125
FatI	CATG	7 cut(s)	49, 132, 270, 718, 820, 1092, 1121
FauNDI	CATATG	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	4 cut(s)	214, 258, 1049, 1073
FokI	GGATG	1 cut(s)	1183
Fsp4HI	GCNGC	4 cut(s)	214, 258, 1049, 1073
FspBI	CTAG	2 cut(s)	971, 1001
FspI	TGCGCA	1 cut(s)	1028
GlaI	GCGC	1 cut(s)	1028
GluI	GCNGC	4 cut(s)	214, 258, 1049, 1073
HaeIII	GGCC	2 cut(s)	196, 339
HapII	CCGG	2 cut(s)	239, 630
HhaI	GCGC	1 cut(s)	1029
Hin1II	CATG	7 cut(s)	53, 136, 274, 722, 824, 1096, 1125
Hin6I	GCGC	1 cut(s)	1027
HinP1I	GCGC	1 cut(s)	1027
HpaII	CCGG	2 cut(s)	239, 630
HphI	GGTGA	2 cut(s)	198, 228
Hpy166II	GTNNAC	1 cut(s)	698
Hpy188I	TCNGA	3 cut(s)	376, 386, 889
Hpy8I	GTNNAC	1 cut(s)	698
HpyAV	CCTTC	2 cut(s)	342, 872
HpyCH4III	ACNGT	2 cut(s)	327, 1023
HpyCH4IV	ACGT	2 cut(s)	694, 1110
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 607, 650, 764
HpyF3I	CTNAG	6 cut(s)	429, 535, 597, 774, 918, 1170
HpySE526I	ACGT	2 cut(s)	694, 1110
Hsp92II	CATG	7 cut(s)	53, 136, 274, 722, 824, 1096, 1125
HspAI	GCGC	1 cut(s)	1027
Kpn2I	TCCGGA	1 cut(s)	629
Kzo9I	GATC	3 cut(s)	109, 163, 712
LmnI	GCTCC	1 cut(s)	1045
Lsp1109I	GCAGC	4 cut(s)	225, 269, 1060, 1084
LweI	GCATC	2 cut(s)	257, 511
MaeI	CTAG	2 cut(s)	971, 1001
MaeII	ACGT	2 cut(s)	694, 1110
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	111, 165, 714
MboI	GATC	3 cut(s)	109, 163, 712
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	2 cut(s)	109, 712
MluCI	AATT	7 cut(s)	33, 402, 475, 849, 1016, 1152, 1183
MlyI	GAGTC	4 cut(s)	302, 838, 863, 1096
MnlI	CCTC	9 cut(s)	370, 476, 544, 637, 796, 927, 946, 975, 1165
Mph1103I	ATGCAT	1 cut(s)	272
MroI	TCCGGA	1 cut(s)	629
MseI	TTAA	1 cut(s)	1053
MslI	CAYNNNNRTG	2 cut(s)	48, 1131
MspA1I	CMGCKG	1 cut(s)	260
MspCI	CTTAAG	1 cut(s)	1052
MspI	CCGG	2 cut(s)	239, 630
MspR9I	CCNGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	222, 607, 650, 764
NcoI	CCATGG	1 cut(s)	49
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	3 cut(s)	109, 163, 712
NlaIII	CATG	7 cut(s)	53, 136, 274, 722, 824, 1096, 1125
NmuCI	GTSAC	1 cut(s)	174
NsbI	TGCGCA	1 cut(s)	1028
NsiI	ATGCAT	1 cut(s)	272
NspI	RCATGY	2 cut(s)	1096, 1125
PaeR7I	CTCGAG	1 cut(s)	682
PagI	TCATGA	1 cut(s)	718
PciI	ACATGT	1 cut(s)	1092
PfeI	GAWTC	6 cut(s)	65, 233, 368, 514, 656, 706
PkrI	GCNGC	4 cut(s)	215, 259, 1050, 1074
PleI	GAGTC	4 cut(s)	301, 837, 863, 1096
PpsI	GAGTC	4 cut(s)	301, 837, 863, 1096
Ppu21I	YACGTR	1 cut(s)	695
PscI	ACATGT	1 cut(s)	1092
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	194, 1136
PstI	CTGCAG	3 cut(s)	840, 877, 1074
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	2 cut(s)	109, 712
PvuII	CAGCTG	1 cut(s)	260
RseI	CAYNNNNRTG	2 cut(s)	48, 1131
SaqAI	TTAA	1 cut(s)	1053
SatI	GCNGC	4 cut(s)	214, 258, 1049, 1073
Sau3AI	GATC	3 cut(s)	109, 163, 712
Sau96I	GGNCC	2 cut(s)	194, 1136
SchI	GAGTC	4 cut(s)	302, 838, 863, 1096
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	2 cut(s)	257, 511
SfcI	CTRYAG	3 cut(s)	836, 873, 1070
Sfr274I	CTCGAG	1 cut(s)	682
SinI	GGWCC	1 cut(s)	1136
SlaI	CTCGAG	1 cut(s)	682
SmiMI	CAYNNNNRTG	2 cut(s)	48, 1131
SmlI	CTYRAG	3 cut(s)	297, 682, 1052
SmoI	CTYRAG	3 cut(s)	297, 682, 1052
Sse9I	AATT	7 cut(s)	33, 402, 475, 849, 1016, 1152, 1183
SspI	AATATT	1 cut(s)	860
SspMI	CTAG	2 cut(s)	971, 1001
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	2 cut(s)	49, 125
TaaI	ACNGT	2 cut(s)	327, 1023
TaiI	ACGT	2 cut(s)	697, 1113
TaqI	TCGA	4 cut(s)	683, 847, 912, 924
TasI	AATT	7 cut(s)	33, 402, 475, 849, 1016, 1152, 1183
TfiI	GAWTC	6 cut(s)	65, 233, 368, 514, 656, 706
Tru1I	TTAA	1 cut(s)	1053
Tru9I	TTAA	1 cut(s)	1053
TscAI	CASTG	2 cut(s)	67, 963
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	4 cut(s)	213, 257, 1048, 1072
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	5 cut(s)	17, 527, 707, 809, 1164
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	67, 963
Vha464I	CTTAAG	1 cut(s)	1052
VpaK11BI	GGWCC	1 cut(s)	1136
XagI	CCTNNNNNAGG	1 cut(s)	538
XapI	RAATTY	3 cut(s)	33, 1152, 1183
XceI	RCATGY	2 cut(s)	1096, 1125
XhoI	CTCGAG	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	697
XspI	CTAG	2 cut(s)	971, 1001
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.